RNA id: XM_015605106.2


Basic Information

Item Value
RNA id XM_015605106.2
length 4952
RNA type mRNA
GC content 0.52
exon number 8
gene id LOC103030119
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19692184 ~ 19725549 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCACCGCGCGCGcgctccgtctctctctcctctctctctcctcttcactcattcactccgCCACGCAACGCTGCGGGACGCTGCTGGATTACGCTCTTCGtgtggctggctggctggctggctggctcgTTTGCATCACCCAAGATCACCGTTTTTGTTTTGGAGTGTGTTTTTTTGAGGGGAGGCTCGTGCGTCGTCACGTCGTTTACCTAACCTCTGTctatcaatccatcatccatccacctaTCCATCCGTCCTCCTTCAGCAGCATCCCTGCATCCCAGCGCGCTCTGCATCTCAGCACGCTCGCCTggcttgtctctctctttctctctctctctctctccctcactctctctccctctctctctctcactggcgGGATGGACGGCACGCGCTGCTCTCCAGCTTCTCTGCGCGATGCCCATGTCATCTGAGGCTTAAGAAGAGGACAAGAAACAAAGCAActtatctctccctctccacTGTTCTCTTTTACCCTCCATTCAGCTTGCATCTCTTTTGTTGCCATGGACCGGCTGCACTCATCCATGCGCAAGCGTCTCTACAGCCAAGGGGACACGGCGGAGGATGGTGAGCAGGATGCGCGCAGGAAGAGCGTGAGGATGAAGCAGCTGTTGCCCTCTGCCTCGCCGACCGGGAGcagcggagagagagaaagagcaggaggtgaacgaggaggaggaggaggtgggggatcaggaggaggaggaagcggGGGAGGCGAGACGGAGACGGACAtgggcagcagagccttcaTCAGGGCAAACGGTGACTGCCGGAGGTTCAGGGGCAGCAGCAGCATGCCAGAGGGAGATGCTGCCGAGCAGAGGCGCCTGATCACCGAGGAGGAGGCCAGCCctgaggaggaggacgaggaggaggaggatgaggaggcaGAGGAGAAGTGGAGgaagagggagcgagagaggaagagggagatggaggaagaggaggtggtggtggaggagagggagagggagaggacaCCCAGTCTGGGCAAGTTGGAGAGTGGCGAGCAGATGGACGAGGAGAGGCTGTACCAGGCCGGTTTCATGCACAGGCAACTGGGCGCCATGCTGCAGCCCGGGGTCAACAAGTTCTCCCTGCGCATGTTCGGCAGCGAGAAGGCCGTGGAGAGGGAGCAGGAGAGGGTCAAGTCGGCCGGCTTCTGGATCATCCACCCCTACAGTGACTTCAGATTCTACTGGGACCTTATCATGCTGCTATTGATGGTGGGAAATCTGATCATCATCCCTGTGGGAATCACATTCTTCAAGGATGAGCACACCCCGGCCTGGATCGTCTTTAACGTGGTCTCCGACACCTTCTTCCTAGTGGACCTGGTCCTGAACTTCCGGACGGGAATCGTGAAGGAGGACAGTACGGAGATCATTCTGGACCCTCAGCTGATCAAGGTGAGGTACTTGCGCAGCTGGTTTGCTGTGGACTTCATCTCCTCCATCCCTGTGGATTATATCTTCCTCATTGTTGAGACTCGGATTGACTCGGACTTCTACAAGACCGCCAGAGCTCTGAGGATCGTCCGCTTTACCAAAATCCTCAGTCTTCTCAGACTGCTACGACTGTCCCGCCTCATCAGATACATTCACCAGTGGGAGGAGATTTTCCACATGACCTACGACCTGGCCAGCGCTATGGTGCGTATAGTGAACCTGATTGGCATGATGCTATTGCTGTGCCACTGGGACGGCTGCCTGCAGTTCCTCGTGCCCATGCTGCAGGATTTCCCCTCCGACTGCTGGGTTTCTAAAAACAAAATGGTGAATGATACTTGGGGTCAGCAGTACTCTTATGCCCTGTTTAAGGCTATGAGCCACATGCTGTGTATTGGCTATGGCATGTACCCACCCGTAGGCATGACAGACGTTTGGCTGACCATCCTCAGCATGATCGTAGGTGCCACCTGCTACGCCATGTTTGTGGGTCATGCCACCGCCCTCATTCAATCACTGGACTCCTCACGAAGGCAATACCAGGAGAAGTACAAACAGGTAGAGCAGTACATGTCCTTCCACAAGCTTCCTGCAGACATGCGCCAAAGGATCCATGACTACTACGAGCACCGTTACCAGGGCAAGATGTTTGACGAGGAGAGCATTCTAGGAGAACTGAATGAGCCACTCAGAGAGGAGATCATCAGTTTCAACTGTCGAAAGTTGGTGGCCACCATGCCCTTATTTGCCAATGCAGATCCCAACTTTGTGACCTCCATGCTAACAAAGTTACGCTTTGAAGTCTTCCAGCCAGGGGACTACATCATTCGAGAAGGCACTGTAGGAAAGAAGATGTATTTCATCCAGCATGGGGTGCTAACAGTCCTGACCAAGGGCAGCAAAGAGACAAAGATTTCAGACGGATCTTATTTTGGAGAGATCTGTTTGCTGACCCGGGGCAGGAGAACAGCCAGCGTGAGGGCAGAAACCTACTGCCGCTTGTACTCCCTGTCTGTGGATCATTTTAACGAAGTGCTGGAAGAGTACCCGATGATGCGGCGAGCCTTTGAGACAGTAGCCCTCGACCGCCTTGACCGCATTGgAAAAAGAAACTCTGTTCTCCAGCACAAGGTACAGCGGGATCTCAACTCAGGTGTGCTTAACTACCAGGAAAATGAGATCATCCAGCAGATTGTGCAGCATGACAGGGACATGGCTCACTGTGCCCACCTATTGCAgactcctcctccagctccacaTATAGCACACAATCCTTCCTCACACACCCCAGTCATCTGGGCTCCTCTCATCCAGGCGCCTCTCCAAGCTGCTGCTGCCACCACCTCTGTGGCCATCGCCCTTACTCGACACCCGCATCTACCCCACACGCTCTTCCGGCCTCCAGTGCCCTTGCTAGGTTCACTCAAAGACCCGCCAGGCCATTTGAGAAGGTTCCCCATGCCAACTGCAGCTACAGGTGCTTCCACACGGGGTGGCTCATCTTCTGGTGCCAGTTCTCAGCTTGGCTCAGGTGTGGAAACACCTATTCTAGATTCTCTCCTAGCCAAAAGTTCTGCAACAGCATCCACACCTCCTCCAATTTCTGCTTCCAGCTCCCTGCCATCTTCAACCACAACCACAATTACCACCTCCACATCAAGCATCAGCGAAGCATCCGTCTTCTCCCACAGGCCTCTGGCCACCTGTGGTTCTCGAACCTCAAGTATAGCCCAGCTTCACACCCAACCTCAGTTTCCACCAGCTTCTTTTCCCAACATCACTGCTCCACTGCCTGGCTTCTTTCAACAGGGGGCACTAGGTGGAGATGCAGCTCAGTTTTCCATCCCCCCTGCCTCTACTCTAACCCCTTTGATAGCCCACTCAATTAGCCCAATATTGACCCAACTGCAGTCCACGCAACCCAGTCTTCAGCAGGCCAAACGCAGTCAGGAGGTAAGCAAGCCAGTCAGAACAGCCACTCCATCACCATCTACCAGATCTCCACTTTGCTCCACGAATCTTTCAGAGCAGTCTTCCCCAAAACCCCAGACTCAGGACCCTCAAAACATACTACAGCCTGATATTCTCCCCCATCAGCCCTGTGAACCCTCTGCCCTGGCCTCGCTTGCCCAGTATGGGTCAGGGAATGCCTCCCCATGTAGTACCCCACCAGCCTGGAGCCCCATGTCCCAGAGTCCCTTGGTTCAACGGAAGAGAACACCCCTTCACAGCAACCCTTCCAGCACTTCCGGGTCTCAGAGTTCCCTTCTGTCCCCTCAGACCCTCTTTCCTCCTCCACCCTCCCAGCCGCGAGAGAGGGGCGGGTCACTGGTTGATCTCCCCTCTCAGGACGTCAGCAccatctctatatctctcccCTCGCCTCATACTCTTGAAAGACCCCAGCCAGTAAGGAAAGTCTCCCATGTCCCAGATCCGTCCCATGTGGTGTCTACTTCAGGTTTCGCCAAAACCCCCTCACCCACCCCTGTAACTAAACCATACAGTTCAATACCAGGACATGTGGCCCTATCGAGACAGACTTCAAAAGGGTCCATAGTGCAGACTGGCTCTTCTAGTGGTTCACCAGCCCCTGGGTCTAGAGACAGATCCAGTCCAGGGACGCCAAGCTTACAACCCAAACTCCCATCAAACTTATGAGACCAGACTGTACCCTTGTCTATTGTACAGACTGTGTTTTTTATCACCTAGTAATATCTATCTACAAAAAAGAAACTTTTATGGCTGAGAAGAGGACGTTTGTCTACCTGCATTTATAATCGTACAATGACTACTTTTCAACTCATGCCAAATGAAGGAATATGGAAGTGACTGATGACTGAATGAGCGTGTATGGGAATGATTGAGTTGTGTACAAGCAAAATGACTGTGTCTTCCAagttcttttagcattttttgcAATACTAATGTCTGACAGTGAGATTATGTAGGGATATGCAACAAATAGcagtttccaaaaaaaaaaagaagtcttTACAGTAATAACAGAATTATGGTTGTCGTTGTACCAATAAAAAATGGCCCCTTTCAAAGGAGTGAAATATCCTGGGGAAAGATGCAAAAATACTCCTTGCTCTTCACCATATCATCTAGTGtggtagaaaaaaaaaccaTGTAGTACAGATCTCACTTATCAGgttgcacacacatacacacacacacacacacagaaatgcaTACACCTGATCCTCGTCATATTAATTATCAGACACAGACTGATTATTCCACTAGACCTTGCCCCCCAACCATACCTCCTTGTTGATCAAGGCGCACTGCTCAGTATTTATGGCCTTTCCTTTTTTAACAAAACTGCCTTAGAGCCTGAACGACCAGGGAACGATCCCCTCACTTCCACCACAAAAGAGATAAGATAAAGAATGTATGGCAATCATTTTGTATGTGCTTTCTATGTGTACTTGTGCGGTACCTAAGCAATAAAACTGTATGCTTGA

Function

GO: NA

KEGG:

id description
K04957 HCN4; hyperpolarization activated cyclic nucleotide-gated potassium channel 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101154 lncRNA downstream 4066 19640821 ~ 19688118 (-) True G75069
TU100940 lncRNA downstream 273380 19325392 ~ 19418804 (-) True G74928
TU100916 lncRNA downstream 337133 19354093 ~ 19355051 (-) True G74911
TU100913 lncRNA downstream 342173 19344945 ~ 19350011 (-) True G74909
TU100915 lncRNA downstream 350248 19279652 ~ 19341936 (-) True G74910
TU101183 lncRNA upstream 20015 19745564 ~ 19746445 (-) True G75081
TU101206 lncRNA upstream 73836 19799385 ~ 19799625 (-) True G75092
TU101207 lncRNA upstream 79217 19804766 ~ 19804970 (-) True G75093
TU101227 lncRNA upstream 145593 19871142 ~ 19872681 (-) True G75106
TU101228 lncRNA upstream 145593 19871142 ~ 19872681 (-) False G75106
XM_022672277.1 mRNA downstream 31922 19643325 ~ 19660262 (-) False LOC103047267
XM_007246601.3 mRNA downstream 31922 19643325 ~ 19660262 (-) True LOC103047267
XM_022672278.1 mRNA downstream 31922 19645633 ~ 19660262 (-) False LOC103047267
XM_022672279.1 mRNA downstream 54532 19635125 ~ 19637652 (-) True LOC103046970
XM_007246599.3 mRNA downstream 59745 19624687 ~ 19632439 (-) True LOC103046663
XM_022672283.1 mRNA upstream 4614 19730163 ~ 19749501 (-) False LOC103021510
XM_015605122.2 mRNA upstream 4614 19730163 ~ 19749501 (-) False LOC103021510
XM_022672282.1 mRNA upstream 4614 19730163 ~ 19744962 (-) False LOC103021510
XM_022672281.1 mRNA upstream 4614 19730163 ~ 19744962 (-) False LOC103021510
XM_007246609.3 mRNA upstream 4614 19730163 ~ 19744962 (-) True LOC103021510
TU100809 other downstream 619296 19070938 ~ 19072888 (-) True G74838
TU100745 other downstream 751720 18939174 ~ 18940464 (-) True G74791
TU100498 other downstream 1662437 17982747 ~ 18029747 (-) True G74591
TU100463 other downstream 1808398 17877026 ~ 17883786 (-) False nrg4
XR_002650248.1 other downstream 3913761 15761764 ~ 15778423 (-) False LOC103046265
TU101215 other upstream 134145 19859694 ~ 19865982 (-) True G75100
TU101358 other upstream 301613 20027162 ~ 20032027 (-) True G75207
TU101364 other upstream 361869 20087418 ~ 20100250 (-) False hsd17b12
trnat-agu_2 other upstream 1170554 20896103 ~ 20896176 (-) True trnat-agu_2
TU101746 other upstream 1544580 21270129 ~ 21273017 (-) True LOC111193105

Expression Profile