RNA id: XM_022672247.1


Basic Information

Item Value
RNA id XM_022672247.1
length 2494
RNA type mRNA
GC content 0.45
exon number 11
gene id asb15
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19086893 ~ 19095789 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCAGTCAGTTTAGATAGGGCACGGCTAAACCAAGCAGTACAAGACCCGTGACTTTACTGGAACTATATCTCAAAAGAATAATGGATGCTCCAGATGATGTGGATGAAGATGAGCAATTTCTTAATTATGCGCTCCAGCAGAGCCTCCAGGGatcatacagtaataataatccAGCCAgTGTGGACAATGAGAAGATTTTGGATGCAATCAGAAGAGGTGACCTGTTTACTCTCCAGGATATGCTGGACTATCCAGCTGCCTTTACTGAGGTGGATAATAGAGGCTGGTACCCAGTTCACCGAGCAGCAGTACAGCAATCTGTCCAAGTGCTTGAAATGGTGCTGTATGCTTCTTACAGGCTGAGCCTGGATGAGGAAACAGCAGATGGACAGACTCCTCTGACTCTGGCTACTCAAGCTGGACTAGTGGAGATTGTTCGGACTTTGCTGGCACATGGTGCTTCTCCTCACAGAACCAACCGAAAGAATGAGTCTCCTCTACTGCTGGCTGTAAGAACAGACGCGTATGATATTGCACGAGCACTTTTAACTCGAGGAGCATCAGCGAACCAGGTCTGCCTGAAGAAGTGGACACCCATGCATGAGGCTGCTAAAGTGGGCTGCATTGAAGTCCTGAAGCTTTTACTGCAGCATGGAGGCCAGATCTCAGACACAGATCAGAGTGGGGTGACCCCGATGGGCATCGCTGCAGAGTACGCCCAGGCAGAGGTGTTAGATCTCCTCATTCACAATGGTGCTGATGTAAACGCCCAGGCACCGAATGgtgacagtgttttatatgatgCTGCTGGCGCTGGTAATCCTGACTGTATCGACCTTCTCCTTCAAAACGGGGCCAATCCAAACCTCCTAAATCTCTCCTCACAGCTTCCTATACATCGAGCAGCTTACGAAGGGCACTACCTtgtacTCAGGATGTTGATCCCCGTTACCACCAAAAGGGCTCTCAGACTTTCTGGCCAGAGCCCTGTTCACTCAGCTGCAGATGGTGGTCACATCCAGTGCCTGGAGCTTCTCCTGGAGAAAGGCTTCGATGTCAACGCTCCACTCGAGCAGCACATGTCTGATAATTACGGGGATATGAGGAGAAGCCCCTTGTTCTTCGCAGTCTCCAATGGAGATGTCACCTGCACTGAACTCTTGCTGAATGCAGGTGCTAAAACTGATCTGGATCCACTGAGCTGCCTCCTCGTGGCAGTGAGAGCCGGGAGGTACGAGATCGTCAAGGTTCTCCTGGCCAGGCAGGCTGATGTGAACTGCTACTTCACAGCAGTGATTGACACACTGTTCCCTTCAGCTCTACAGTACTGCCTCAAGGACGAGATGATGATGCGAATGATACTGAACTGTGGCTACGATGCAGACAAGTGCTTCAGCTGTCACCATGATTCAACACGGAGCAGCCGTAGTCATCACTCAGAGCATTCAAGTGAAAAGATCCCTttttgtgATTTCATCAGTGTCTCGTGGTTGGCGCAGAATGCAGGAAGAGTTGTGCGGGTTCTCCTGGATTATGTTCTCTATGTCCCCATCTGTCACAAGCTGAAAATGGTTCTGGAGAAGCATAAAGAGTGGCCAGAGATTTGTGACATTTTAGGAAACCCTCGTACCCTGAAGCACATGTGCCGACTGGAGATCAGGAGAAGGATGACTCCACACAGACTGGGTGACCCAGCCATCTTCAGCTCTGCACATTTCCCACCTGGACTTCAGAGCTTCCTGATGTATAGAGAGTATGACCTTCAGGAAGCATAATTCCTCATTTGTGGCACCCCGGAAAAGGACACACatttcacatgcatttctggacaagccgCGAGATACAGAACTGgcactgaaagtgaaagaagcatgtggactgggTGGTAGAGTAACATTATAGAGTAATGGTGAGAGGTGCTattttatggtaaaaaaaaaaaaacaatgttgctTTAAATAGGGACTATGCTTTAAATAGCTTGTCTTTGGTGCTGTACCAAATAAGAGAATAGAAGGTGCCCTTTGTTTATGTTTGTATATAAGttgataagataaaaataaatttctcaccaaaaaatactgtaaataattgaCCAAGCCCATGTGCTATGTgttgctttgtttgtttgttttgacaATAAACTAAAACTTTTGTCAATGTTCAATACTTGTGtgtatatgaatttatataGCATTATAGTATGTTGCTGCTTTTTGTAAATGCAAGTTGCTGTGACGTGTGCTGATAACCTGATGACTTGTCAGTGTGGCTGGGcaatattggaaaaatattgtattatggtatcaagttttttttttttaccatattttgacaAAATGCATTAATTGTAGCATATTCTAACCTGTATCAATATACTAGttattaaaatacaattatttttattcaaaatgttcTGCACTTCATCCAATTAATAAGGATTTAATTGGATGCAGTGCAGTTGGTCAGTGTTCTTCAAAAACTGACATGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100779 lncRNA downstream 92009 18992823 ~ 18994884 (-) False LOC103034453
TU100767 lncRNA downstream 100700 18984195 ~ 18986193 (-) True G74804
TU100756 lncRNA downstream 118983 18960804 ~ 18967910 (-) True G74796
TU100748 lncRNA downstream 136777 18948629 ~ 18950116 (-) True G74792
TU100688 lncRNA downstream 437122 18649439 ~ 18649771 (-) True G74740
TU100915 lncRNA upstream 183863 19279652 ~ 19341936 (-) True G74910
TU100920 lncRNA upstream 191551 19287340 ~ 19290287 (-) True G74915
TU100940 lncRNA upstream 229603 19325392 ~ 19418804 (-) True G74928
TU100913 lncRNA upstream 249156 19344945 ~ 19350011 (-) True G74909
TU100916 lncRNA upstream 258304 19354093 ~ 19355051 (-) True G74911
XM_007246556.3 mRNA downstream 695 19081148 ~ 19086198 (-) True LOC103036047
XM_022672245.1 mRNA downstream 40675 19023690 ~ 19046218 (-) True LOC103035727
XM_007246555.3 mRNA downstream 44758 19023690 ~ 19042135 (-) False LOC103035727
XM_007246551.3 mRNA downstream 78527 18992668 ~ 19008366 (-) True LOC103034453
XM_022672244.1 mRNA downstream 100248 18978848 ~ 18986645 (-) True LOC103028224
XM_022672256.1 mRNA upstream 268809 19364598 ~ 19437614 (-) False ptprz1
XM_022672255.1 mRNA upstream 268809 19364598 ~ 19437614 (-) True ptprz1
XM_022672257.1 mRNA upstream 268809 19364598 ~ 19437613 (-) False ptprz1
XM_022672261.1 mRNA upstream 268809 19364598 ~ 19437612 (-) False ptprz1
XM_022672259.1 mRNA upstream 268809 19364598 ~ 19437612 (-) False ptprz1
TU100809 other downstream 14005 19070938 ~ 19072888 (-) True G74838
TU100745 other downstream 146429 18939174 ~ 18940464 (-) True G74791
TU100498 other downstream 1057146 17982747 ~ 18029747 (-) True G74591
TU100463 other downstream 1203107 17877026 ~ 17883786 (-) False nrg4
XR_002650248.1 other downstream 3308470 15761764 ~ 15778423 (-) False LOC103046265
TU101215 other upstream 763905 19859694 ~ 19865982 (-) True G75100
TU101358 other upstream 931373 20027162 ~ 20032027 (-) True G75207
TU101364 other upstream 991629 20087418 ~ 20100250 (-) False hsd17b12
trnat-agu_2 other upstream 1800314 20896103 ~ 20896176 (-) True trnat-agu_2
TU101746 other upstream 2174340 21270129 ~ 21273017 (-) True LOC111193105

Expression Profile