RNA id: XM_015605117.2


Basic Information

Item Value
RNA id XM_015605117.2
length 2089
RNA type mRNA
GC content 0.45
exon number 9
gene id slc15a5
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19454053 ~ 19459308 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAACAAACATTACTCAGAAGTCACAGGAGAAGATCAGCATGAGCTTCTGCACGTGTAGATGCTGGCAAATAAGACTTCACAGTCCTGTGAGGAATTGCTTTGTTGTTTCCCAGATTGGATAGAGAAGATACTGCAGTGCTCAAGCAGCACTTCACACAGGAGGACCTGAAGAAGCAGCATGGCGTCTCTCAGTGTTCCTGGCCTCCATGGTGGCCGTCAACTGCAAAGGGTCTCGACCGCTCGACGCCCGAGTGGGATGGTCACCCCATATAAGCCTCGAAAGTCCAGAAAGAAGCTGCAGGTGATTATCTGTATTCTTTTTGTGGAATTGTTCGAGAGGTTCACCTTCTTTGGGATTGTTTGCAATATGATCCTCTTTTGCACCATCAAGCTGGGATATCACAATTACCAAGCTGCCACAGTCAACCTGTGTTTTGTTGGAGCCAGTACACTCACACCTGTTCTTGTGGGCTGGTTTGCAGAGACGTGTTTGGGGAGGACAAAAGTACTCTATCTTTGCGCTCTGCTCCATTTTATAGGTACTGCCATGCTCCCTGTTGTTGCATTCCCCTTTGAGGATTTCTACATTGACACACACAATATTATTCACCGACTAGAGCCACGAGAGCAACAGCTTCTCTTCTACGTTGGGCTGCTAGCCGCTGCCCTGGGTATTGGGGGCTTCCGTGCTATTCTATGCCCGTTAAGTGCCTATTACCTTCAGGGTTATGACCAACACCAGATACTGTCCTTTTTTAATTGGCTCTACTGGCTTGTGAATCTCAATTCTACAGTTGTGTTCCTGGGGATCTCCTATATTCAGCAGTCTGTGGGTAAAAACCTGGGCTTTCTCATTCCCTTCACCTCTGTTCTATTGGCTCTTGTTGCGATACACATGGCACGCAACAATCTCATCTTTCATCCAAAGAAAGCCAGTTTGTTGCTGACCACACTGGGTGTGTTCCTAAACTCCTTAAAAATGTCCTGCCTCCATTATCGTCATTTGAGTGGAGACGTGAATAATTGGCTGGACCGTGCCAAGGAGAACAATGGAGGACGCTACAGTGAGACCAGTGTTGAAAATGTTAAGATCCTGGTTAagctttttcctctttttggaCTGCAGCTGCTCTACCGGGCTTGTATAACCCAAATTCCATCAGGATACTACCTCCAGACCATGCATTCAAATCTGAACTTCAATGGTTTCCTCCTTCCTATAGCAGCTATGAATGTGATCAGTATCCTGCCATTGCTAATTTTAGCACCACTACTGGAATTTTTTGGCACCTGTTATCAGTCTTTGAAGAAAACACCTCCTTCTCCAGCCAAATTCATAACAGCGGGACATGCCTGTGCAGCTCTGTCTGCACTAGCTGCAGGGATTACTGAGATCCACAGGAAAGACTTCTCTCAGGTGGAGCAGACACTGTCAGGAACAGTACTACAGGTGTCCTCAATGGCCTGTTTTCAACTTGCACCTCAGTATGTCTTACTGGGTATAGCAGAAGCATTTGTCACACCAGCATGCTCCCTCATCTCTTTCTGTATGACTCCTAGTAACCTCAGAGGCATCTCCCTACACTTCCTCACTCTCTTCTATGGAGGAGGATGCTTTCTGGGTGCTGTTCTGACTCAGTTCTTTTATCTTGTTTCTGGGGGGAACTTCTATCCAAATACACTCAGCGACGGCAATCTGGAGAGATTTTTCTTCACTTTGGCAATTCTGATGACCATAAATAccctgctgttttggagattatCTTGCAGGTACACAGACCTGAGTGCTGAACTGTGTAAAGAAGTAAGACAGAGTCACCTGGCTGAGAAGCTCCTGCAGCATAAATCTTGTCTCCGATTCTACGACACTGTGGAttacactggaacatcagcatCCTTGGAAATGATCCTCTGACTCCTGCATGATGATGGTCAAGCCCCAAGATGCTGGCGTCACACAAACATGAAAGACTTAATACTGGCATACATAATTTAGGATTTTGCTTCCTTTTTCCTCAAAACTGTGCTAGTGAATTGGTTAATGTAACTGAGCCATTTTAAATCTacaataaagttattttgtaaTATG

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K14639 SLC15A5; solute carrier family 15, member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100845 lncRNA upstream 257638 19194542 ~ 19196415 (+) False cadps2
TU100846 lncRNA upstream 257905 19194373 ~ 19196148 (+) False cadps2
TU100802 lncRNA upstream 367822 19085803 ~ 19086231 (+) True G74833
TU100800 lncRNA upstream 371532 19082312 ~ 19082521 (+) True G74831
TU100776 lncRNA upstream 459190 18992788 ~ 18994863 (+) False G74810
TU100875 lncRNA downstream 665 19459973 ~ 19462085 (+) False tmem17
TU100986 lncRNA downstream 18690 19477998 ~ 19481088 (+) True G74951
TU100987 lncRNA downstream 21043 19480351 ~ 19481987 (+) False G74951
TU100995 lncRNA downstream 47810 19507118 ~ 19510980 (+) True G74958
TU100996 lncRNA downstream 47810 19507118 ~ 19507522 (+) False G74958
XM_007246574.3 mRNA upstream 91132 19341280 ~ 19362921 (+) True aass
XM_007246575.3 mRNA upstream 91132 19341280 ~ 19362921 (+) False aass
XM_022672254.1 mRNA upstream 119716 19330251 ~ 19334337 (+) False fezf1
XM_022672253.1 mRNA upstream 119716 19330255 ~ 19334337 (+) True fezf1
XM_007246568.3 mRNA upstream 131278 19140153 ~ 19322775 (+) False cadps2
XM_022672263.1 mRNA downstream 650 19459958 ~ 19462187 (+) True tmem17
XM_007246588.3 mRNA downstream 34614 19493922 ~ 19503421 (+) True cnot2
XM_007246589.3 mRNA downstream 34759 19494067 ~ 19503421 (+) False cnot2
XM_007246587.3 mRNA downstream 34836 19494144 ~ 19503421 (+) False cnot2
XM_022672268.1 mRNA downstream 67904 19527212 ~ 19537617 (+) False LOC103044129
TU100801 other upstream 368497 19082816 ~ 19085556 (+) True G74832
TU100573 other upstream 998856 18454851 ~ 18455197 (+) True G74649
TU99974 other upstream 3165724 16286676 ~ 16288329 (+) True G74169
XR_002650242.1 other upstream 4533050 14891534 ~ 14921003 (+) False rpgrip1l
TU99159 other upstream 4804502 14648829 ~ 14649551 (+) True G73533
TU101007 other downstream 68683 19527991 ~ 19533073 (+) False LOC103044129
TU101298 other downstream 744311 20203619 ~ 20207922 (+) True LOC103028745
TU101630 other downstream 1563948 21023256 ~ 21025128 (+) True G75383
TU101641 other downstream 1629314 21088622 ~ 21096906 (+) True G75391
XR_002650259.1 other downstream 1791159 21250467 ~ 21264776 (+) True mov10l1

Expression Profile