RNA id: XM_015605134.2


Basic Information

Item Value
RNA id XM_015605134.2
length 6131
RNA type mRNA
GC content 0.48
exon number 27
gene id LOC103042575
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 16489647 ~ 16528087 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTATTAAATCTCCCTCCATTAAAGTCGGGAGCTTCCAAGAGCCGGGCGCATTAAGCCTGATTATAGTGTGCCAGTAGGAGGAAACAGGGTCTATGTGTCAAGCTGGTCGTCGAATGATTTTTTATCCCTCACCGACGTCTATCTTGTCAGTTAAGAGACAGTGAGctcagatagagagagatagatagatagggatagagggagcgagagatagcagcagtagtaaagtgtttgtgtgagagagagatagagatatagaAAGCACAGAGATGATCCTTTGACTGTGATAGAGGTTTTAGCTGTGACATTAGTACAGTGTGGTTGTGAAAGGGCAAAAGGCTCTTTGGCTACACAGGACAAACATGAGTCTATGAAGACCCGGCAGCGATTAAACACATGGAGAGGGGAGGACGGAAAACAGGTGGCTCTTTCAAACAGACCTCCATCAATCGCACCACCTCTGGCTCTCAGAAGGGACAGAAAGCCTGGGTTGAACGGACCTTTCAGAAAAGAGAATGCAATCACATTTTCCCATCAAAAGATCCAACTCGGTGTGCCTGTGGAAATTTGCTGACTCAGCATGCCGCAATCCCATCTGCTGCTGTCACCAACAAGCCTGCAGTGGACAACCTGCTGGTGCAGGTGGACCCGCCTCAGGAAAAATGGACTGTGTCCAAACACACGCAGACTTCCCCCACGGACGCTTACGGCACCATCGAGTTCCAGGGAGGAGGATTCATCAACAAAGCCATGtatATCAGGGTGTCTTATGACACCAAACCAGACAACCTGCTGCACCTCATGGTGAAAGACTGGCACCTGGAGCTTCCCACATTACTCATATCCGTTCATGGAGGCCTCCAGAACTTTGACCTGCAACCAAAACTCAAGCAGGTGTTTGGAAAAGGACTGATCAAAGCTGCTGTTACGACTGGAGCCTGGATCTTCACTGCTGGCATTAACACAGGGGTAATGCGCCATGTTGGAGATGCACTGAAAGACCATTCCTCTAAATCTAGAGGCAAAGTCTGTGCCATAGGGATTGCTCCATGGGGAATTCTAGAGAGCAAGGAAGATCTTATCGGACGAGACGTGAACAAACCTTACCAGGCGATGTCCAATCCACTGAGCAAGCTGGCCGTGCTCAACAGCAGCCACTCACACTTCATCCTGTGTGATAACGGCACATGTGGGAAATACGGGGCGGAGGTCAAACTGCGGAGGCAGCTGGAGAAACACATATCTCTGCAGAAGATTAACACCCgATTAGGCCAAGGAGTGCCACTCTTGTGTCTGATTGTGGAAGGAGGTCCAAACATGATCACTGTGGTGTTGGAAAGTTTGCGTGAGGACCCGCCCGTGCCTGTGGTGGTGTGTGACGGAAGTGGACGTGCCTCAGATATCATCTCCTTTGCTCACAAACATTCACAGAAGGGAGGAATAATAGGTGATGATGCCAGAGACCAGCTGCTGGTCACCATTCAGAAGACGTTTAGCTACAGCAAGAGTCAGTCCCAGCAGATCTTCCTCATGATCATGGACTGCATGAAGAAAAGAGAGCTGATTACAGTCTTCCGAATGGGAGcagaaggacagcaggacaTTGAAATGGCCATTCTGACAGCTTTACTAAAGGGCACAAACGCCTCAGCCCCAGATCAGCTGAGCCTGGCTCTGGCCTGGAACAGAGTGGATATAGCACGCAACCAGATCTTTGTGTATGGACACAACCTTCCACCGCCGAGTGCAGTGGCCAGTGCTACAGCCATCACAGCGGCATCAGTGAAGGAGAAGCCGAAGGAAAAGCCACAGGGAAAAGGAaagagcagagggaagaaggGGAAGGGTGGGAAGGCCAAGGCAGAGGTTCCAGAAGAAACAGATCCTAGGAAATTAGAACTACTCAACTGGGTGAACTCGTTAGAACAGGCGATGATGGACGCACTGGTCCTGGACAGAGTGGACTTCGTCAAGCTGCTGATTGAAAATGGGGTCAACATTCACCACTTCCTCACCATCCCACGCCTGGAGGAGTTATATAACACAaAACTTGGGCCTGCCAACACTCTGAACGTCATAGTTCGAGAAGTTAAAAAAGGGAACCTCCCACCAGACTATCAAATCACTCTGATTGACATCGGCCTGGTGGTGGAGTACCTTATCGGTGGAGCCTATCGCTGTAACTACACAAGAAAAAGCTTCCGCTCTCTCTACAACAACCTTTATGGCCTGAAAAGGCCTAAAGCCCTCAAACTTCTTGGCATGGAGGATGATGAACCAAGGCCAAAAGgcaagaagaggaagaaaaaaaaggaagaggaGGTGGACATTGATGTGGACGACCCTGAGGTCAGCCGTTTCCACTTCCCCTTCCATGAGTTGATAGTGTGGGCAGTGCTAATGAGGAGGCAGAAGATGGCCCTGTTCTTGTGGCAGAGGGGAGAGGAGGCCATGGCAAAGGCACTGGTAGCCTGCAAGCTCTATAAAGCTATGGCCCACGAGTCTTCAGTCAGTGAGCTGGTGGACGATGTTTCCCAGGATCTGGATAACAACTCCAAGGAGTTTGGAACTTTGGCATATGAACTTCTGGACCAAGCCTACAAACATGATGAGCAGGTGGCCATGAAACTGCTCACATATGAGCTAAAGAACTGGAGCAACTCCACCTGTCTGAAGCTAGCTGTGGCTGCCAAGCACAGAGACTTCATCGCCCACACCTGCAGCCAGATGCTCCTCACTGACATGTGGATGGGCTGCCTGAGGGTTGGCAAAAACCCTGGACTCAAGGTGATTATTGGCATCATATTTCCACCATCAATCTTACTACTGGATTTCCGGCTGGGTGATGATGCACACCAAGTTGATGATCGTGAAGAAGTCAAGGAAAAGGATGATGACAACAAATCTAGCAGGgaTGCTAATGCAGATACACACTCCAAGAAGGGTGATGAAGAGGAAGGCAGCAAGAAAATGAAGCGTGTGCCTATCGGAAGAAAGATCTATGAGTTCTACAATGCCCCCTTCACCAAGTTCTGGTTCAACACGATATCCTACCTTGCGTATCTGATGCTATACAATTACATTGTCCTGGTGAAGATGGAGCGCTGGCCATCGATGCAAGAGTGGATAGTCATCTCTTACATTCTAACACTGGGCGTGGAGAAAGTTAGACAGATCCTGATGTCGGAGCCTGGTAAACTAAAGCAGAAGATCAGCGTGTGGCTCGAAGAGTACTGGAACATCACTGACCTGGCGGCCATCTCTACGTTCATACTGGGTGTTCTCCTCAGACTGCAGCCAGAACCATATATGGGCTATGGCAGGGTTATCTACTGTGTGGATATCATCTTCTGGTACATccgagtgctggatatttttgGTGTCAACAAGTACCTCGGACCCTACGTAATGATGATTGGAAAGATGATGATTGACATGCTGTACTTTGTGGTGATCATgttggtggtcctgatgagtttTGGTGTAGCACGTCAGGCCATCCTGCACCCTGACGAGGAGCCCACCTGGCGTCTGGCCCGAAACATCTTCTACATGCCCTACTGGATGATCTATGGAGAGGTGTTTGCGGACTCAATAGACCTTTATGCTATGGAAATAAATcCCCCCTGTGGAGAAAATATGTATGATGAAGATGGAAAGAAACTTCCACCCTGCATTCCTGGTGCCTGGCTCACTCCAGCCATCATGGCGTGCTACTTGCTAGTGGCTAATATCCTCCTCGTCAACTTGCTCATCGCTGTGTTCAACAACACCTTTTTTGAGGTGAAGTCCATCTCAAACCAGGTTTGGAAGTTCCAGCGTTATCAGTTGATCATGACTTTCCATGACAGACCAGTGCTTCCTCCCCCTCTCATCATCCTCAGCCACCTCTACATCCTCTTCAGAAAGATCTGCTGTCGCTGTGGCAAGAAAAAAGAGGGGGAGCTGGATGAGAAGGACAAAGGACTGAAGCTGATTCTGAATGCTGAGGAGCTGAAGGCTCTTTATGAATTTGAGGAGCAGTGTGTGGAAGAGTACTTCAGAGAGAAAGATGATGAGCAGCAGAACTCAAATGATGAAAGAATACGAGTGACATCTGAAAGAGTGGAAAACATGTCCATGCGTCTGGAGGAGATcaacgagagagagaacaccATGAAGGCTTCCTTACAAACAGTGGACCTTAGGTTGGCCCAGTTGGAGGACATCCACTCTCGTATGATGAATGCTTTGGAGAAGCTGGCAGGGATTGACCATGCTGAACTGACCCGGACGAGGTCAGGAGCTTCTTCGGTATGTGGCCCGCCCTGTCTTCTGCGCACCAGCAGCATTAACAGTGCTGATGGGTACAGCCTGTATCGCTACTACCTGGATGACCTCCCCCCTACTGAAGACAAAGAGGGCAGCAAAGCAGGTCAGCTAGCTCCAATGAAGCAGGGGAGGATGAGTAAGGCTCCAAGCATCGCAACCCTTGGTCCCAAGGAGTATGGAGCAAATATGGAACTGGAGGTCCCAGTTTTCAGGAGCCGTCCACCATCATGTGTGGACATCCGAATTTCCCCTTGTGATTCAAAGCCGCAAGGTCTTGATCAGGCTGGAGAGACTCAAACAGAAACACCTATTCGCTCCATTCCTGCTAATCAAGCTTACCAGGAGGCCTCTGCAGTTAAAAGAGACGTAACGCATGAAAGAGCTAAGCTTGAAACTGCCATCTCATTCCCCTTAGAAAAGGTAAAGGCATTCAGATACTATCCATCAGAGACGCTAAGCACTTCACCCTCTTCAACCCGGAAGTCTCGAAGCACTATACTGTTTGACCCCGCGGATAGGGACGAAGAAATGCAGCAGGTCAAAGATCCCAACTCACAAGAGCAAAGGACTGATGGGTCCTCAATCGTTAGAAGATGGAGTGCTGGCTATGAGTACAAGGTTCACCCCAGCCTTTTCGGTCAGATGCCTAAAATATCAGTGGTCAGAGGTCCAGATGTACAACAAGATGAAGCAGATCAGTCTGAGGGTCAGCACACACTACAAATACCATCCATGCACTTGGAGGAGAGACGGCCCGAGGAGAGACCCCCAGGAGGCCCACCCGAGAAAGGCCAAGAAGAGCAGTCTGAGGATAATCAAGAGGACAGAAAGGAGAACGGCCCAGATGAAATTCTAAAGACGGAGTGCGGTCCTGAAGACGCATCAAAAGACCCAACCAGGAACAATGAAGAACTGATGAATActgcagaagaagagaagaTGTACTTAGATGATGATGTAGATAACTCTTGTCACCTTCAGATTCCCGAAGAGAGAATGTTTCTGCCAGCAAGATCCAAAAGCTGGAACAAAAATCAGCGTAAAGCCTTGGGGGAAACCATGGACAAGCCACGTGGTTCCTGCAGTGAAAGAGACCTCACAGATGTCAGTTCTTTCGACAAGGGTgataaaacatctgaaaaagAACAGGAAGATGAGGAGCCCAAGAATGAATTAGAACTGACGGTGGCAGACAAAACACACTGCTAATTACAGAAAGGAATGAAATAGACAttcaaataaaaagaacattgtaaCACAATTTTCATTCATACAGTTATCTTCTCCAAgacataacatttataacatcatTTCAGAGCATCTTATAGCATTGATAGACTCGCAACATTATGTTTGCTTCCTATGTAAGGGATCTTTTTGATGTCTCGAAAGCAGTGTTTTTCAACCTCAGTCCTGGAGGCATCCTCCcctgaatatttattttctttctcttcgcAAAACAGCAGATTTATCTGATCACATAACTAACAAAGAATAGTAGGGTAGTAGGgaatgtgttaaagcagctaAACCACTAAAATGCGTAGGGCAAGGAGCAGAATGCCTTAAGGATcaggattgagaaacactgcattaaagACATAACTAAGGAAATATGTCTGTTGTATAGTTTTTGCTTTACTTATATACGCTGCAaacaaatactttatattaccaatgactatatatatttagcatGGATGTCATGGGTCCATTCCCTTCTGTTCTGTAGAAATGGTGCAAAAAGCGGATTGTTTCACTGGATACCCAGTTTGTCCAGAAAGTGTACTATTTCAACAATAAACGTGCAGTTCATGTA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005216 ion channel activity molecular_function

KEGG:

id description
K04976 TRPM1; transient receptor potential cation channel subfamily M member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100056 lncRNA downstream 19324 16467603 ~ 16470323 (-) False LOC103041134
TU100025 lncRNA downstream 167994 16316945 ~ 16321653 (-) True G74211
TU100015 lncRNA downstream 197628 16286228 ~ 16292019 (-) True G74205
TU100012 lncRNA downstream 236895 16252492 ~ 16252752 (-) True G74203
TU100011 lncRNA downstream 267374 16219096 ~ 16222273 (-) True G74202
TU100116 lncRNA upstream 118101 16640842 ~ 16641656 (-) True G74285
TU100117 lncRNA upstream 136762 16659503 ~ 16690357 (-) True G74286
TU100126 lncRNA upstream 220319 16743060 ~ 16747522 (-) True G74295
TU100143 lncRNA upstream 247701 16770442 ~ 16786039 (-) True G74306
TU100220 lncRNA upstream 274304 16797045 ~ 16801051 (-) True G74368
XM_007246480.3 mRNA downstream 19342 16467089 ~ 16470305 (-) True LOC103041134
XM_015605124.2 mRNA downstream 31893 16447496 ~ 16457754 (-) True acsbg1
XM_022672200.1 mRNA downstream 31893 16448827 ~ 16457754 (-) False acsbg1
XM_022672198.1 mRNA downstream 75302 16384549 ~ 16414345 (-) False cib2
XM_007246487.3 mRNA upstream 95410 16618151 ~ 16738665 (-) True otud7a
XM_007246489.3 mRNA upstream 292175 16814916 ~ 16829981 (-) True bnip2
XM_007246490.3 mRNA upstream 292175 16814916 ~ 16829980 (-) False bnip2
XM_022672207.1 mRNA upstream 294901 16817642 ~ 16829981 (-) False bnip2
XM_007246492.3 mRNA upstream 435833 16958574 ~ 16965560 (-) True LOC103044821
XR_002650248.1 other downstream 711224 15761764 ~ 15778423 (-) False LOC103046265
TU99163 other downstream 1944209 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 3868291 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 3924681 12564348 ~ 12564966 (-) False fbxo31
TU100463 other upstream 1354285 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 1460006 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 2416433 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 2548197 19070938 ~ 19072888 (-) True G74838
TU101215 other upstream 3336953 19859694 ~ 19865982 (-) True G75100

Expression Profile