RNA id: XM_015605138.2


Basic Information

Item Value
RNA id XM_015605138.2
length 4641
RNA type mRNA
GC content 0.44
exon number 20
gene id pot1
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18893227 ~ 18937127 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAGTTTTCCGCGCTCACATTAAACCTGCAGCGGGctgctgctgtcctgctgtcacAGAGTCACACCGCTGTACTGACCTCATCTATGGACCCGTTTACCACTAGTGTTAGCCAGCTAGCTGTGTTGGGTATTTTATACAAATACTGCGCGGACCGTAAAAAATCAGAAACAGCTAGTTAAAATGTCCACGTTAGTTTTGTCTGTCAGCTGAAGTTGGCTGGAGTCTCTTGTTAGCTAACTAAGTGTAGCGGCTAGACGAGCGTTTGTTTTTAGCCGACTAGCAATAGTAGAgtttaactagctagttagttagcttagctaacctagctaactaactaagaTAGCTAGCTTATAAACGCCAAAGGGAATATGGTGTAATTTGAGAGTTTGGGTGTTAAACGTGGCTGTGTTCCGGAGGAGATAAGTTCTGatattgacTGTAAGGCATGCCTGTCCACACAGTGAAAGATGTGAACGACCTGGACACTAAGGTCCCTCCACATCTGCAGCACGTCTCTATATCAAACCTCAAACTCACCTCTGACTGCCTGCACAGGAGTGTTAAGgGTAAAGTGGTTCAGAAGGGCCCTGTAGTATCTTGCAGACAGAGAGAATATCTGCTGAAGGCTGTTATCCAAGGGGAAGACCCCCAACAGAGATCAGCTTCACAGCATGCATCAatcaatgtcattttttttggcACATTGGCCAAGGACTTCTCACAGTCTGTCAGTCAAGGGGACATTATCTTATTGGCCGGCTTCACCATCAGTAAGTCACCATCTGAGCAAACTGACAAGCTGCATCCCTGTCACTTGGAGATGAGTGGCCCTGATGCCTGTGTGCATGTGTGTCCCTCTGCTGGTTCCTCATCCAGTGGATCTACTACTTCTGAGcCCAAGTACACTTATATTCCTTTAAGTGAGCTGAAACCCAGGAGTATAGTGAATGTGTATGGTGTGGTGACATTTTTCAAGCAGCCCTTTCCCACCAAAGGCACAGATTACTGTTCTACACTCAAGATCACAGACCAGTCTAATGCAAAAGTGGGCTGCACTATATTCAGTGAAAAGCTTGAAGACCATCCTAAAATCTTCAGGGTTGGAGACATAATTCGGCTCCACAGAGTGAAGGCACAAATGTTTAATGGCTCCATGACTCTTCTGACCACCCTGGGCTGGTCTACCATCACCTTTGATGGAATGATTGACAGCCCGGTTGAGCCCCGCACATCAAGCCGGACTTTCCACTTTGATGAAGCTGACAAACATACAGTGGAAGCACTCCGCCAGTGGGCAGCGAGCCAGTCACTGCTCACCAGTGAGTCTACTGTCCCCCTGTCCTCAGTGCAGCCCAAGATGTACTTTGATCTGACCTGCCAGCTGTTATCAAAGGCCTGCATGGACAGTAGATGCATACTGCTTAAGGTGTGGGATGGGACAGAATGTGGTCATTCTCTGCTTAATGTGGCTGCGGCACCAGATGCCTTGGAGGGAGAGTCTACTTGTTTTCAGGATCAACAGAACATGACAGCCAATATTCTGGTCTATGACAACCATTTGGAAGTAGCCAGAATGTTGCAGCCTGGCATGTTCCTGAGACTATACAACCTCCACGCAGTACCTCAGACACCTCCTGGCCAGCCCCCTGATGTGCCCCAACACCTCGTTTTCCACCTGCATGGCGGCACTTCATACGGCAGGGGCCTGCGCAGCATCCCATCAGACAGTCCTGATCTACAGTCCCTCAAGAGAGTGTTGGAGAGccatgcagaaaaacaggctgcTGAAGCAGAGGTGAATGATGGCACTCTTCTAGATGTGTGGTACACTCCTCCAGAGACAGTGGGTGAAGCAGATACCGAAGACTTTTACACAGTTCAGACATGTGACCACAGTCTGCAGCAGGTGTCACTTGCACATGTGAAGACTTCCATACCACCTGTGGTTTGTCACGTTCAAGCCAGAGTGAAGTCTTATCAACCACAGAAACTGTACCAGTGTCTCAAACTCTTCTGTCCGcagtgtaaaacagtAAAAGATGTCCCTGATGATGAGTCCATAGCTCAGGTGTTCGAGGAGGCTCTGAGAAGCAGTAACCAGCCCTGCAGTGAGCACTGGGCGGTCACCTCCTCAGCAGACTCCCACCAGCTGGACCGAACCGTCACCATGCACATGTCCTGTGACATGGTGCTGGACAACACTCACTTACAGATGATCTTTCTTCAGGGTGTGACCCTGGATGAGATGTGCATAATATCTGGTTCTCATAAGAACCTGGTCCCTGTGTGTTCAGGAGAGGACAGGAGAATGAGACTTCTGGATCTCTCTGCCCCATTCCTCTTCTGTGGAGACAAGAGATATTATGGgtgtgAACATTGCTCTCAGTCCTCGTTTGTGGATCCTGTTGTTTCAGGTGTAGACGTATGGGACGAGCAGAATGTAGCTAAAGCTCTTGGGGTGCAGCTTATGCAGTATATGCTTCTGCTGCAGTTCGAGCTGGAGGATGAGACTGGCACACTGGATGCTTTGCTTTGGGAGGATGCTGAGAGATTCTTTAATGTCTCTTCAGCTGAAACATCAGCCAATCAGGAATTGCAAGACAGGGTTCAGAACATCATGGACAGGATTCATCCATCAGGGAGTAGCATGGCTGAACGGCCATGGCTGGCTCTCTGCCTCAGTGTCTACACTGTAGAAGAGAATGGCCGGACTCAAGTGTGCTACCAGATCACTAACACAGAAACCAGGGGAAATCTCTAGGCTCCTCATTCAAGCCATAGAACATTTCCTTTAAGTGAAGGATGCCCGTATAATAGCTTAAGCTAAAAAGACTGCCATATGAAGGTCAACCAAGGTCAGCCAAAAATGTTCAAAGCTTCTGCTGATGTGAAATAGTTTGTCCTGTCAAGGCCTGTGTATGTGTGCAAACATTTGCACAAACATACCAATTGTGTCTTTTTCAGCTAATTCCAGtgtacagtttttatttatttgctgaaattaTAAAGAACAAgacataaaattatatataactgTGCATACCTGCCGTAGTTAACCTCTAGATTTGTCTAAGCAGGCAAGTAAGCTGTAATTttgcatgaaaatattctgaATTGTGTATAAATTGGTGCTTTTTATTAGTGTTAACTACCTTCTGCTCCATCATATCAGGTAATATAACTATTCACTTAATAACCTTAAATCAGTCGTTTGGGGGTAGAGAATGTAAGAAACTGTATAGGGCAGTGGGGTCCCAGAACTAATGCATGTCAGAACTCAAAAACCCTCCATTAGAGATTTATGGTTAGCTTGGTTGTTTATGGAGGAATCTGCTAATATACACCAGCCAGCCCCTTTAATAAACCTCTCACATCACAGGACCACCACACAATAGATGATGTTTGGACATTGGCTCATTCTTAGCACTGCATTGAccctgacatggtggtggtgggtttagtagtgtgtgttgtgctggcatGACTTAATTAGACACAGCAGTgatgtttccactcactgtccactctattagacttttctaccttgtagataaagtaaagtcagggtcagcagctctgaatctgttgctttagtccttcatcagtgaaGATGTTGGGCACATATTCCAGGTTGGTGGTCTATTCTTAATCCAGCAgggacactgaggtgtttaaaaactccagcagcactgctgtgctgagaatGAACCACCACTAAATAATACCCGTCCTGTAGTTTCCTGATAAGATAAAAGGAGGCAATAAAGTGTGCTGAGAAACAGATAATAGTCTGTAATTATACAGCTACAGAATGCCCTATTGGTCTTAATGAAGTGGCTGCTTGGTGTACCAATCTCATGCTCATCATTCATCTAATAAACATGGAATCCCAGATCTGATTAAAAGAATCAAATgtgaaaaaacttaaaaattaattacagGATTCAGAATTTGAACAGTGGGGTCTCTCACTGGACATTATTTACCCACATCTTCCTGATACTTTTTATAGCTCTTCTTTCATAATGTTTGAGCTCGCTGTcttcatatattcatataaaaaCATTAGTACACATTGAAATCTTCATGGAAGCTTTGTTCTCAAGTGTTCTCAGTATTATGGCAGCTACGTAAAGACAAATCTAATATAAAGCTTAGACCTGTAGACAATGGTAAAATGACTATATAAGCTATAtagaaaaaattataaatatgaagTGTTTCCTAATTTGTCTTTTTCACTGAATCGGTTTATAAATCTTGAAACTTGAAATGTGTTATATTTGTGTTCTGTGTCTAAGCTGTCATTgagttttatttctcttttgaatACATGATATCTATTTTTGAATGTCTTTGGCTGCCGTTTGAGTGTGAACCATCTTGGTTTTAGTCCAGtagaagaaaatgaaaattacagaaagtgtgccTTTGCCTCTAATTGAGCAACATGCATCTCTTTTTGGCAGAATTGTCCATTATTATAATTGTTCATACCTCATTGTAATTGTTCATTTTCACAGCAGATGATATGTAATAAGTAACAGTGTCTTGTATAGATTTAAGCTTATTTGCAACTTTTTAAGCATTCAGGCTTCCAGTTTTAACTCTGTGATATAAAATGCTCTTTTTCAACTTA

Function

GO:

id name namespace
GO:0005515 protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650255.1 lncRNA upstream 189340 18702721 ~ 18703887 (+) True LOC111193102
TU100662 lncRNA upstream 265199 18627649 ~ 18628028 (+) True G74714
TU100608 lncRNA upstream 266817 18625071 ~ 18626410 (+) True G74672
TU100600 lncRNA upstream 359097 18533808 ~ 18534130 (+) True G74668
TU100586 lncRNA upstream 413882 18478129 ~ 18479345 (+) False LOC103029914
TU100720 lncRNA downstream 20511 18957638 ~ 18970866 (+) True G74770
TU100774 lncRNA downstream 55551 18992678 ~ 18994863 (+) True G74810
TU100776 lncRNA downstream 55661 18992788 ~ 18994863 (+) False G74810
TU100800 lncRNA downstream 145185 19082312 ~ 19082521 (+) True G74831
TU100802 lncRNA downstream 148676 19085803 ~ 19086231 (+) True G74833
XM_022672241.1 mRNA upstream 54470 18672401 ~ 18838757 (+) True LOC103033497
XM_007246546.3 mRNA upstream 224767 18653276 ~ 18668460 (+) True LOC103032349
XM_015605105.2 mRNA upstream 249148 18637244 ~ 18644079 (+) True LOC103032021
XM_007246625.3 mRNA upstream 258280 18632303 ~ 18634947 (+) True LOC103027288
XM_022672238.1 mRNA upstream 278106 18577789 ~ 18615121 (+) True LOC103026996
XM_007246549.3 mRNA downstream 1968 18939095 ~ 18950348 (+) True gpr37
XM_007246552.3 mRNA downstream 119660 19056787 ~ 19081399 (+) True LOC103034777
XM_007246553.3 mRNA downstream 119662 19056789 ~ 19081399 (+) False LOC103034777
XM_007246554.3 mRNA downstream 130710 19067837 ~ 19081399 (+) False LOC103034777
XM_022672249.1 mRNA downstream 161389 19098516 ~ 19114949 (+) True iqub
TU100573 other upstream 438030 18454851 ~ 18455197 (+) True G74649
TU99974 other upstream 2604898 16286676 ~ 16288329 (+) True G74169
XR_002650242.1 other upstream 3972224 14891534 ~ 14921003 (+) False rpgrip1l
TU99159 other upstream 4243676 14648829 ~ 14649551 (+) True G73533
XR_002650241.1 other upstream 5995296 12871484 ~ 12897931 (+) False LOC103043719
TU100801 other downstream 145689 19082816 ~ 19085556 (+) True G74832
TU101007 other downstream 590864 19527991 ~ 19533073 (+) False LOC103044129
TU101298 other downstream 1266492 20203619 ~ 20207922 (+) True LOC103028745
TU101630 other downstream 2086129 21023256 ~ 21025128 (+) True G75383
TU101641 other downstream 2151495 21088622 ~ 21096906 (+) True G75391

Expression Profile