RNA id: XM_015608793.2


Basic Information

Item Value
RNA id XM_015608793.2
length 6131
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC111188173
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9196453 ~ 9225559 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCCTCGGCCAGACGAACTTCTGTCTGCTCCCAAAGTTTTGTGGCTGTGCAAAAACTGTGGATGGGTTTATGTGAGGCGCGTTATTCCCTACCCGTTTTCGGGCACACCCCTCATCctgctgctctctgattggctgaatgtCAATAGGAACTTTTTGTTGGTAATGATATATGAGCTGGCGGCCAGTTCTAACACAGGGGGTGGGAGTCCACCAGTCAGTCGTAGCCTGTGTTGTGAAGAGGGGAGATATCAGCAGCCAATCCCAACACAGTAGGCTAGGCTTAATGGAAAACGggtgtgaaaagaaaaaaactgctcTGAAGAGCCTGTTGCTCGCTTGTGGCCAATAGAAAGAGGCCCTTTGTGGCCTAGTCTCCTCCCCACCCCCGAACAACGGAGAGGCTCGGGCAGCGCAGGGAAGTTTGGGGAGACGGCTGGATGGGCTCATGTTTTTCTACTCGTTTGGAAATTTACCGAAGCGTTTTTCGGGCACCATGAACTCTTCAAAACGCCTCATTCTTCTGCCCAGCAAACGGATTAAGTTTCGAACGGCGTGGTAAAAACCTTTTAAAGGAAATATGGATTGAACACGGGAGGAGAACGCCTTCCGAACTTTCTCttctccagctctctctcttacaATGGAGTTGAGGCAGAGGAGCCGCTACCCGGAATGGCGCGCGCTCTGGCTCGTGCTTTGGCTCGTGCTCACCCTATCCTGTCTGTCCAGCGCGTCTGAGGAGTTCAGGTACTCCGTCCAGGAGGAGCAGAAGCCGGGCTCCTTCGTGGGAGACATAGCAAAGGATTTGGGCCTCACTCCTCAGAGGCTGACCGAGAGAAAAGTGCGCATAATTTCGGACTCCGAATACTTTGAAATCAACGCGGCCAGTGGCGCCCTGGTCATCCGGGAGATTATCGACAGGGAGCGCATGTGCGAGTCGAGCGCGGCGTGTTATCTACACCTTCAGATCGTTCTCCAGGACCCGCTGGAAATACATCGCGTGCGCGTGGATATCTTGGACGTTAACGACAACGCGCCGCAGTTCCCGGCGAGGAACTCCTCACTGGAGATCTCGGAGGCGGCCGCGCCTGGAACGCGCTTCCGTCTGGAGAGTGCGCGGGACCCCGACGTGGGTGTGAACTCTTTGCGTACGTACCAACTAGCACCCAGCGACTGCTTCAGTCTACGCGTCGAGACCAAGAGCGACGGTAGTAAGTTCCCGGAGCTCGTGTTGGAGAAGGCCTTAGACCGAGAGACGCAGGACTCGTTTCGGCTGCTGCTCACGGCCGTGGACGGTGGGCAACCCGAAAAATCGGGCACCACCCTGCTGCTCATTAAAATCCTGGACGTGAATGACAACGCACCAGTTTTTGATCAGTCTGTGAAAAGGGTCAGTCTTTTAGAAAACTCTCCAGTGGGAACTATTGTAGCTAAACTCAACGCCACTGATGCAGACTCTGGAATGAATGGGGAAGTGACTTTCCTGTTCGGTAAATACACCCCAAACAGAATTCATAATCTTTTCAGTGTGGATTCTAAAACTGGGGAAATTCGTGTTACAGGGGAGGTGGATTATGAGCAAACCAGTGTATATGACATTACATTTGAGGCCCGGGATGGCGGGACCCCTGCCATGGAAGGTTCTTGTAATGTCAAAGTAGAAATAACAGATGTGAATGATAACACTCCAGAAGTGACACTTACCTCACTCTCTAGCCCCATCAGCGAGGATGCTAAAACCGGCACTGTCATCGCACTAATCAGCGCAAAAGACTTAGACTCTGATAAGAATGGCCAGCTGACGTTAAAGGTGTCACCAGGCTTGCCATTTAAACTCAAATCTGCTTTTGGGGAACATTACACCCTTGTCACTGATGGCCGATTAGACAGAGAGACTGTCCCTGAGTACACTGTTGTTGTCACAGCAACAGATGCAGGCACACCTCCCTTGTCTTCTCAGAAGACATTTGTGGTTAGTCTTTCTGATGTAAATGATAATGCTCCACTGTTCTCCCAATCCTCTTACTCTGTAGACATTCCGGAGAATAATTCCCCCGGTACTCCCATAGTGGCTGTCTCTGCTTCAGACCCAGATTTGGGAGACAATGCCCGCCTAACATACTCAATTTTAGCCTCCACAATCCATGGCAGCCCTGTGTCATCTTATGTCTACATCAATCCAGAAAATGGGAATATCTTTACTATGCGCTCGATAGACTATGAGCAGATGAATGCTTTTAAAATAGAAGTGCAGGTACATGATGCTGGAACGCCCCCACACAGCTCCAATGTCACCGTCCATGTTTTTGTCATTGATCAGAATGACAACTCACCTGTCATTCTTTACCCCGCCCACTCGGACGACTCAGGCCTCCAGCTGACCGTCCCCCGCTCTGCCCCTGTGGGCCACCTAGTGAACAAGATTGTAGGCTTTGACCCGGACAGTGGGCACAATGCTTGGCTGTTCTACAGCATCACTGGAGACGATGCTGCATTCTTCCGCATTGGAGCAAACACAGGTGAGCTGCGCACCACACGAAAACTGGCTGACGAAGACCAAGATGGCAGGGAACGTTCAGCTTACAGTTTTGTGGTGGTCGTGCAGGACAATGGCCAGCCTTCCAAGTCCACTTCAGTCCCCATCACAGTCAGTGTGGAGGAGAAGAGCATTGATGCAGTTCCGGATTCCCACAAACCTTTCTCCCGGAAAGTTAGCGGGATGACAGATGTCACCTTGTACCTCATCATATCGCTGGGCTGTGTGACATTAGTCTTTCTTGTAACCACTGTAGTGGTGGTGGTGCGGTGCCTCAAAAACAAGGACGACTTGACATGCTGCTACTCAAGGAAGGGCTTCCGTTCCAGGCATGCCTACCAGCAGCGCCCTCATAAAGACCTACACCTCCAGCTCAACACAGATGGGCCGATCCGGTACATGGAGGTGGTCGGGGGCCCTCAGGAGCCCAACACACGCACATATAGGCCCTGCTACTCAACTCTTTCCAGCAGGAGTGACTTTGTGTTTGTCAAGACTCCCATGCTGAGCCATAACAACACATTAAACATGACTCTAACGAGGAAGCACTTAATGAACTCAGCCAATGAGCAAAAACCCCCTAACACTGACTGGCGTTTTACCCAGAACCAGCGGCCCGGACCCAGCGGAGCTGCTGCCACCCCAGAGGTTGCTGTGGGAACAGGACCCTGGCCCAACCCCCCCACTGAAGCCGAGCAGCTCCAGGCTCTTATGGCCGCCGCCAATGaAGTGAGTGAGGCTACCAACACTCTGGGTCCGGGCACCATGGGCTTGAGCACCCGCTACAGCCCGCAGTTCACCCTGCAGCACGTCCCCGACTACCGTCAGAATGTCTACATCCCCGGCAGCACGGCTACGCTCACCGCCAACCCCCAGCAGCCCCAGCAGGCCCTGCCGCCTCAGGTCTCTGCCGCCCAGCCTGAACCACCAAAGGCCCAGACACCTGCCAGCAAGAAGAAGTCCACCAAGAAGGAGAAGAAGTAAAGATTGAGAATGAGACAGAGGGGTGGTGCTGGATGAGGTAGACAGTGAGGACGGAAGGAGGTAGACATAAGAAAGCAGATaagaatggatagatggatggaaatatacctagagagagaaaaagaaagaggtgaGTTAGGGAAGAACATAGCTTACTCTTCTCTTGCTGCTTCAGAGATTGGTGAGCTTTGGTGCACTGAACTTTAAAGGATGtggaaaaaatgagaagaaGGAAGTGAGGAAACATCAGTGTATCAATGTGCACCTTCCTCTGGAGTTCTTTTGTcttctttattattttgatttttggttttgaaACACTTTTTGTTGTTACTCTCTTGACTTCTGACTGTGGTGGGTGTGTGCAAGAAAGACAGCCCACCGTCTGTTCCAGTCCTAGCTTTCATTCACTGTATTCCCTGTATTATACCACGGCtgattatacagtatgtgttgcGTATGATAGGATAATTTTTCACACAGAGATTTAATCACGGTTCCATTAGACCTCTGGTCTAGCTGAATGTTTTGGAAGTTGGGAgagattttactttttattttttttttgttggctttgttttgtttgctgtttCGTTTTGAAGGACAATACTTTGACGTGTATGGCATCATCAGGTGTATAACACAGTGCTTTTGTGATGGTGATCTTGCTTTTACTTCTTCACTCTGAGGGAGAGGGTTAACCTGTGGTGATCATCATGTTGAAAATGACTTATGATAGTAATGATTATATTGATGATAATTTGATTTGATGCtttgagtttttgtttttcttctttttgtataTCCTGTGCTGCATTTCCTGGCCTTACCCAGAAGAAAAGTGTTGATTTTTGTAATATATCACTTTGATGTTTGATTTGATTCTGATGTTTGacacttttctttcttcttcctcAAATCGTTTCCTTTTCAGGTAAATAAATAGCTGTTGCTGTGCCTAGGCTACCACTGATGGAATACatgaaatctaaaatctaacaAAGTATGTGAGGGTTCAGCTTTTAAGGAATATAATACAggtaatccttttttttttgcatgacgcATTTTAGCCAAACATCTTATAaatctaaagctaaaactaggaGTAACTATGCATTGCTTGACAGAGAAGAACCCCTTGAGATCAACTCCATTTGTAGCATCAATTGGATGTTAGAATGAGAAGATGAATAATTGCTCTTTTCTAAACGATCCATTgtgtccttttttctttttttctttagtttttgagCTTGACTCACTTCTCCATTAGTGAGTTGGgaagttttttaaaataatttcaaaagCTCTTCAAATTGTGCTTTCACCAGCCCAGTGCATGCGTAACTTCTAGCCTTGTGGCATGCTATGTGTTCAGAGCCAAACACGATACATGTACtgtaacagagaaagagagactgtaTCATTAATTACATCATAACATTAATTACCAGCTGCCTGAGAGTACAGTAGAGCCAAAATAAGATCTTTCAGAAACACTGGAAGTGTTTCGCTTTGACACCATAAAGTGTTCAATTGTTGTTCTGAGCCCTACAAGAGTCTCCTAAAAGTATCTTTATCTTAAATAGATCATCTTAACTGgtgtagagagagtgagtgtacAGTGTGATGCTCACCTAACAATTTAAGAACAGTCTTTTGGTTGTTTAAGTTAAGATACTTTCAGGAACCTCAGTTCAGAATGATGATTCAGAATTTAGTGACCCAACAATCAACAGTAAGCAACAGCAAGCTCAGTCCTAAAGCCACAATCATGGAAGTGCCACTCAGAAGGGGCAAATAGGACATTCAGTCCAGTTCCCAAAGCTCCACTCAGCTGGAAATCCTGATCATTTACCCCATACCTCCCATCCGTCCACACAATGCTAAAAAATCATGACCTGTTGTAAATAGATATCAGTCAGTATACAGAGTAAGATGCGTTCACTAAGAAAAGTATCCAATAAGATTTCTAAGCCTGGAACACAGGCCTACTACTGGAATGTGTtgcattacttttgttttttttatagtaaaatgatggggaaaaaacaaacaaacaaacaaaataactaaaaaaaacaatgttctcaGAGATGTGTTGCAGAAGTAGTACTTTAGCACATGAAGGCCAACACTAACTCGATTGTAAATAGAGAGATTAACTTCTAAGGATTTAAAAGAAAGTGGCACACACGTAGTCTAGAAACTTGTGAAgttttttgcatatatttttgtgttcacattttcttttctcctaCTTTCTTCTCCGATCGATCACTCCTAAATGCATAGACGCAAAAATAACAAACCTCCTAACTTCCTGTAGCCTTTCCTTTTCCTTTGTGATTTCTATTGTGCATATGTGCTAGACTGCTTCCTAATGTCTATATGaagaaacaaatataaatattatctatgtgtgtgtgtctctgccaATGCCGTAATGCTCTGTATCCCACTGTAACATCCCTCTTATTAAATGCTAAGACTCCCCCTCCCCCTTCTCCTCAGTGTTACACTTATTTTATATGCTAATATttatattgctgttttattttctcttgaACACtgacatttcaaataaaaagttATGAAATCATTAA

Function

GO: NA

KEGG:

id description
K16497 PCDHGC; protocadherin gamma subfamily C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97469 lncRNA upstream 44487 9142362 ~ 9151966 (+) True G72263
TU97484 lncRNA upstream 105835 9089876 ~ 9090618 (+) True G72278
TU97464 lncRNA upstream 160427 8955355 ~ 9036026 (+) False LOC103030246
XR_002650234.1 lncRNA upstream 403277 8784572 ~ 8793176 (+) True LOC111193079
TU97390 lncRNA upstream 711690 8483923 ~ 8484763 (+) True G72209
TU97492 lncRNA downstream 1956 9227515 ~ 9227886 (+) True G72285
TU97515 lncRNA downstream 366748 9592307 ~ 9639931 (+) True G72305
TU97519 lncRNA downstream 372390 9597949 ~ 9651534 (+) False G72306
TU97521 lncRNA downstream 372390 9597949 ~ 9651534 (+) False G72306
TU97518 lncRNA downstream 423588 9649147 ~ 9651534 (+) True G72306
XM_015608812.2 mRNA upstream 1938 9187244 ~ 9194515 (+) True LOC107197946
XM_022672083.1 mRNA upstream 21554 9171322 ~ 9174899 (+) True LOC103034588
XM_022672084.1 mRNA upstream 33710 9158954 ~ 9162743 (+) True LOC111193086
XM_022672087.1 mRNA upstream 38055 9156733 ~ 9158398 (+) True LOC111193089
XM_022671909.1 mRNA upstream 43193 9134449 ~ 9153260 (+) True LOC111193051
XM_022672093.1 mRNA downstream 50987 9276546 ~ 9348427 (+) True pcgf3
XM_007228037.3 mRNA downstream 565712 9791271 ~ 9799463 (+) True LOC103043406
XM_022672096.1 mRNA downstream 601728 9827287 ~ 9853057 (+) True tbc1d2
XM_022672099.1 mRNA downstream 684847 9910406 ~ 9957528 (+) True LOC103044029
XM_022672100.1 mRNA downstream 684847 9910406 ~ 9957528 (+) False LOC103044029
TU97487 other upstream 47034 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 2310912 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 2657659 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 3158705 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 3159579 6036802 ~ 6036874 (+) True trnaa-agc_14
TU97933 other downstream 853020 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 3377793 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 3645925 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 5423270 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 5665975 14891534 ~ 14921003 (+) False rpgrip1l

Expression Profile