RNA id: XM_015608816.2


Basic Information

Item Value
RNA id XM_015608816.2
length 2852
RNA type mRNA
GC content 0.41
exon number 1
gene id LOC103033622
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9097379 ~ 9100230 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agagagagagagagagagagagatgaagagaaaaaTATAAGCCGACAGTATCAGGCTTCACAGTGCAGGATCTACTCCATTTTTGAACTCCGGATGGATGAAGAATCTAcgtatatttttgttatttttgtgttggcttttaaacttatttaaatttttatttatgtaagatGTTTTTTCCAACAagatacattctttttttaaggGTGCAATGCATTAAGATGCTTGTGGTAGtgctgtctgtttgttttttttccggACGTGCACTCGGTGAAGTGCGCTACTCAGTTCCAGAAGAATTGCAGCGTGGCTCGGTAATTGGAAATCTAGCACAAGACTTGAAACTTAACGTGGATGAACTGATACGACGCAATGCACGAGTCGTGGCAGAAGGGACTCGACAGTTTTGTGAGCTGAGTACAGAGACAGGCTCTCTCTTAGTCAGTGAGCGAATGGATCGGGAAGAGCTTTGCACACAGACTGAGGTATGCATCATACAGTTTCAACTGCTCCTCGAGAACCCACTTAAAGTGTACAGCCTCGTACTGGATATACAAGATATCAATGACAACAGTCCCTTTTTTGATAATGGACAAATTGAAATGGAGCTTTTGGAGTCAACAATTCTGGGGAGACGCTTCCCACTGGAGAGCGCACAAGATCCTGATATGGGAGCTAACTCAGTTCAGCACTACCGACTTAGCGAAAACGATTATTTTGCTTTGGAAATGAACACTCAGATGAATGCAAATGCGTACCCTGAACTGGTTCTTAAAAAGCCACTGGACCGCGAAAGCCAAGTTGATCACTTCTTGACCATCAGTGGGGTGGATGGGGGTCATCCACCTCGTTCTGGTACAGCTTCTATTCACATTCATGTGCTGGACGCAAACGACAACATTccagtttttggtcaaagagtTTACAAGGCCTACATACATGAAAACTCTGACCATGGAACAGTATTGGCAAAGTTAAATGCAACGGATTTAGATAGTGGACTGTATGGTGAAATTAGCTATTCGTTTAGTCACATGCCAGACAAAACTAAAGGGGTTGTTATGATTGACCCTGTGACTGGTGAGGTGCGGGTGGCTGGGTCGATTGATTATGAAGAGGCAAGCACACATGAACTGGATGTTCAAGCCAAAGATGGAGGAGGACAGTCATCACACTGTAAACTTATTATAGAAGTGACTGACCTCAATGACAATGCACCAGTTATAGAAATCAAGTCtgcctccctctctgtctctgaggATGCTTCTCCTGGAACTATGGTTGCTTTGCTCAATGTTTACGATTTGGACACTGGAGCAAGTGGTCGAGTAATTTGTGTCATTTCAGATGATGTACCATTTAGACTTGTGTCAGAagttaaaaattactttatgcTCATTACTGATGGAGTTTTAGATCGGGAGAAGCAGTCTTACTACAACATAACAGTAACTGCAATGGATGCAGGTACACCTCCTATGTTCAGCAGTAAAGTAGTGCCTATAATGATTGGAGATGTTAATGACaatcctcctgtttttactcACAGTGAGTACACCATTCAGGTGCCCGAAAACAAAGCTCAAGGCTTCCTTGTGACAAGGGTGAGGGCTATGGATGCAGATGCCAGGCAGAATGCCCAAATACAGTACTCATTAGCAGAGGATGCAATTTCTTACTTCTCACTGAATGCAGAGACTGGAGAGATCTTTACATTACGCCCATTCGATTATGAAACATCAAGTCACTTCTGTATACGTGTAATGGCGCAGGATGGGGGGAACCCCCCATTTACAAGCACTTGTACTGTTAGGGTTTTCATTGGAGATGAAAATGACAATGCACCAGTTGTCCTTTACCCAGTTCAGTCTACTGTGCACATTGCAGATGATATAGTACCCTTGGCTGCTCCTAAAGGATATCTGGTCACTAAGGTGGTAGCTGTAGATGCAGATGCTGGACATAATGCCTGGCTGTCTTATCATATAGTAAAAGCAACACAACATAATTTATTCTCCATTGGATTACATTGTGGAGAAATCAGAACTCTCAGACCGTTTGCAGATGATGATGAACCAAAACAATTGTTGGTCATTGCAGTTAGAGATAACGGACATGAATCTTTTTCCACCACGGCCACTGTGAACATTGCCATTGGGGAGGGCCTTCCCGTTATAGATGAGCTTTCTGCCTTTGGCCTAGATGAGTCACGAGTGAGAGATgattttataatgtatttaataatcaCATTGGCTGTGGTGTCTGTTCTTTTTCTCATCCTAATCACTGTAGTTGTTTACATGAGATTTTGTAGGCGCAGCTACATGCACCGCTCCTCCACAAAGCTACCTGTTTTCCCCTCAACATATGGGCCTCCAGGCTACTTTGATGTTAGTCGGTGTGGTACGTTGCAGGACGATGATAGGTACAGTTCATTTTTAACAACAGGGTCGTGGAGAGGTGATTTTAGATTTGGGCCAGAGGTCTTTGATTATGATACTCCAAAAAAGAGTGGAACAATGCTGCATGTGATAGGAGACAAAACAGCCAATGTAAAGGTGGGACCATGTGCAAATCTTTCTGTAAGACGCtaatttcagtaaaaatattaaagatttCAGACTAAGCGAAATTAAAACATAGAATGAATAGTTTTGATAACTAAAATCCACATTCACAGAACTAATTTGTGCATTTATGTGTTCTATATTTGTCTATTCAAATTGTGTATTAttcctttaatttatttttttccagtactGCATGTGACTTTGTGCTCTATATCTATCTTAATTCTACTGCgtatgtactgtattgtatCCAATCTAAGGGGTAATTAAAAATcactctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97484 lncRNA upstream 6761 9089876 ~ 9090618 (+) True G72278
TU97464 lncRNA upstream 61353 8955355 ~ 9036026 (+) False LOC103030246
XR_002650234.1 lncRNA upstream 304203 8784572 ~ 8793176 (+) True LOC111193079
TU97390 lncRNA upstream 612616 8483923 ~ 8484763 (+) True G72209
TU97383 lncRNA upstream 659284 8437870 ~ 8438095 (+) True G72202
TU97469 lncRNA downstream 42132 9142362 ~ 9151966 (+) True G72263
TU97492 lncRNA downstream 127285 9227515 ~ 9227886 (+) True G72285
TU97515 lncRNA downstream 492077 9592307 ~ 9639931 (+) True G72305
TU97519 lncRNA downstream 497719 9597949 ~ 9651534 (+) False G72306
TU97521 lncRNA downstream 497719 9597949 ~ 9651534 (+) False G72306
XM_022672090.1 mRNA upstream 3902 9092223 ~ 9093477 (+) True LOC107197811
XM_022672064.1 mRNA upstream 61618 8984810 ~ 9035761 (+) False LOC103030246
XM_022672086.1 mRNA downstream 20300 9120530 ~ 9122791 (+) True LOC111193087
XM_022672085.1 mRNA downstream 27077 9127307 ~ 9130230 (+) True LOC103033934
XM_022671909.1 mRNA downstream 34219 9134449 ~ 9153260 (+) True LOC111193051
XM_022672088.1 mRNA downstream 37557 9137787 ~ 9142082 (+) True LOC111193090
XM_022672087.1 mRNA downstream 56503 9156733 ~ 9158398 (+) True LOC111193089
TU96877 other upstream 2211838 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 2558585 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 3059631 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 3060505 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 3591741 5499908 ~ 5505638 (+) True G71414
TU97487 other downstream 42669 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 978349 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 3503122 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 3771254 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 5548599 14648829 ~ 14649551 (+) True G73533

Expression Profile