RNA id: XM_022671888.1


Basic Information

Item Value
RNA id XM_022671888.1
length 651
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC111193040
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 932017 ~ 938184 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

accacacacacacacacattcttcacATATTCACATATCTTGAGGAGGCTGAAGATTATGCGGCTATGCTCCATGTTGCCAGTGTGAAGCTTTAGCGATTCATCATGTCTGGATTTACTGGCTCAgttttgctgctgctgtgctgtctACCTTTAGCagtgttGTCTCTAGAGTGTTATTCGTGTGTTTTCCCGGCCATCTCTCCACTCGACTGTCTGAAGTTTCCACAGGAGTGTCCTGAAGGTCAGCGCTGTCTGTCCAGTGAGGCTGTGGCAGTCAGAGgttCTATCGTTATAGTCCTGCATGAGAAAGGCTGTGCGATGGAGACTCAGTGTgggaaaagaggagagaagCATGCAGCCGGGCTGAACTTCACCTACGATAATCAGTGCTGCGACACCGACCTCTGCAACTCCGCCCTGCGGGTCAGCGCCCCCTGCTGGAGAGACCTTCTTCTGGGCCTCGTCAGCGTCACCCTTGTCCTCCTGCTTCAGTGAACTGTGTGAACTGAAGAAACGCACTGATTTATAATCACCTGCCCAGGTTTAGGGTTCAATTACAGTTGGGAACATTtgtccttttattgtttttctcttgaaagatacaggggttggacaatgaaactgaagcacaataattgattgtggtgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95096 lncRNA downstream 17768 913078 ~ 914249 (-) True G70477
TU95073 lncRNA downstream 78412 845038 ~ 853605 (-) True G70457
TU95070 lncRNA downstream 91863 836229 ~ 840154 (-) True G70455
TU95068 lncRNA downstream 103461 826913 ~ 828556 (-) True G70454
TU95049 lncRNA downstream 150324 780327 ~ 781693 (-) True G70443
TU95109 lncRNA upstream 82551 1020735 ~ 1020992 (-) True G70489
TU95110 lncRNA upstream 94705 1032889 ~ 1035006 (-) False LOC103042850
TU95122 lncRNA upstream 149659 1087843 ~ 1088144 (-) True G70502
TU95132 lncRNA upstream 177743 1115927 ~ 1117269 (-) True G70508
TU95137 lncRNA upstream 207599 1145783 ~ 1146014 (-) True G70512
XM_022671930.1 mRNA downstream 735734 178319 ~ 196283 (-) True LOC103044579
XM_015603201.2 mRNA upstream 36911 975095 ~ 982603 (-) True rps5
XM_015603200.2 mRNA upstream 36911 975095 ~ 982581 (-) False rps5
XM_022671898.1 mRNA upstream 50262 988446 ~ 1005877 (-) True LOC103041113
XM_022671899.1 mRNA upstream 71702 1009886 ~ 1035016 (-) True LOC103042850
XM_022671943.1 mRNA upstream 1059972 1998156 ~ 2220364 (-) True LOC103026956
TU95334 other upstream 1797684 2735868 ~ 2745072 (-) False tnip1
TU95670 other upstream 2409616 3347800 ~ 3353599 (-) True G70924
TU95798 other upstream 2830977 3769161 ~ 3807099 (-) False LOC103042226
TU96020 other upstream 3473764 4411948 ~ 4413011 (-) True G71175
TU96095 other upstream 3943986 4882170 ~ 4884488 (-) True G71235

Expression Profile