RNA id: XM_022671890.1


Basic Information

Item Value
RNA id XM_022671890.1
length 1392
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC103022766
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 13833553 ~ 13848142 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAAGACCAGTGAACGTGTCTCAAAGAGTTCCGCGTAGTTTACAGTTACTCACTCATTTTAGCAGCCAACAAAACTAACAGCAACTTTTAGAGAACTCAAAACGCCCTGAGGACCAGTATATGTGAATCTCACAGGTTACTTGAAGACATCTTGAAGCTCAGCTGAACAGCCTTCTTCACAAAAATGGCCAACTATTTAATGGATCTGAGCGAAGAAAAGCAGAGGATTGCAGAAGAAGCAAGAAAGGCTACCTCTGAGATAATACAGGATGCTATTGATAAAGAGTGTTACGGCCTCCCAGTCACCTTCCATATGACTAATTGTCCAGAACCATTCGAGTCCCACACGTTCTGCTGCATTCCCACCAAGGAATTTCTGCAGAATCTTCTAGCCAAGCTCAGTGAAGCACGTTTCATAGAGGACACAGACCCTGCAGAGAGTGAAACCTTTGCTTATGTCACTCCACAGGATAACGAtggcattatttatttgtgtgaagCGTTCTGGGAGGCAGGAGACACACTGTGTGAAGATTCAAAGCCTGGAACACTAATCCATGAAGTTTCGCATCTGTTGGGTACAGAGGACATCTTTTATGAACACATGACTTTAGAGTTCTATGAAAACTATGGAACTCTGCTGGGCAAGTCACAATTTTGCATACATGTTAATGGAAAGGAATTTAACGAGGAAGTGTTTCAGGTGAATGCCAACAGCCTAGAGCATGAATTTGAGACCATCATCAACCATGAGGGAGCATACTCTGATGGTAAATACCAGTGCTGTGGAGAAACCAAGAAATACTCTGTTTGCACACATCGCTTTAGAGGCCATTACTATCTGCATGAAAGACtttCCGCCGAAAAAGATCTGATGGAGCGCAAGCTGGCAAAGTTTCGGGAAGAGATAGCTGCTCGCACAAACCAGCAAGAAAAGATCAAATATGTGAAGAAAAAGAACCAGGCCTGCGAGAAGATTCCTGTTATTGAGGCCTGAAAACAACCAGAGGAAATACGTTCAGCTTCCATGATAATAAATGCTAAGATTAATTTAGTTAACCTGAATCCAAACAGTAGGGTATTAGAGATCAATATTTCAGATGCTACATATACATATGTTTGGAtatgctgtttgtttgttcatttattcactagtgtaagaaaaatacatattagtATTAGTGTTCAGTGTTAGCTCTTTAGGTCTGCATTTCATCCTCTTCAAGTTAGCAGGTGTATGCAATTTATGTTCACTGATTAATGTCACTTTTCTTTTGTAGTGAGTCATATTTAACCTACTATGTTACAAAAGATTATGTACAATTCAATTTACCAGAGcattgtttttgtgattttaatttCTTCTTTGTGTATTCCATAGCTCtattctgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98957 lncRNA downstream 2796 13828718 ~ 13830757 (-) True G73371
TU98894 lncRNA downstream 416091 13416657 ~ 13417462 (-) False G73322
TU98895 lncRNA downstream 416091 13416657 ~ 13417462 (-) True G73322
TU98871 lncRNA downstream 595239 13237953 ~ 13238314 (-) True G73302
TU98850 lncRNA downstream 745117 12989186 ~ 13088436 (-) True G73281
TU99027 lncRNA upstream 158610 14006752 ~ 14007149 (-) True G73429
TU99030 lncRNA upstream 189927 14038069 ~ 14038368 (-) True G73432
TU99032 lncRNA upstream 222357 14070499 ~ 14072038 (-) True G73434
TU99102 lncRNA upstream 428537 14276679 ~ 14277106 (-) True G73491
TU99124 lncRNA upstream 619480 14467622 ~ 14468141 (-) True G73509
XM_007228148.3 mRNA downstream 884114 12944453 ~ 12949439 (-) True rag2
XM_007228136.3 mRNA downstream 962171 12722277 ~ 12871382 (-) True LOC103043208
XM_022672158.1 mRNA downstream 1067738 12722277 ~ 12765815 (-) False LOC103043208
XM_007228127.3 mRNA downstream 1159031 12662741 ~ 12674522 (-) True unc45a
XM_007228300.3 mRNA downstream 1171746 12658893 ~ 12661807 (-) True gdpgp1
XM_007228155.3 mRNA upstream 13408 13861550 ~ 13909603 (-) True slc1a2
XM_007228154.3 mRNA upstream 13408 13861550 ~ 13883565 (-) False slc1a2
XM_007228156.3 mRNA upstream 13408 13861550 ~ 13883555 (-) False slc1a2
XM_022672165.1 mRNA upstream 72031 13920173 ~ 13964026 (-) False pamr1
XM_015601131.2 mRNA upstream 72031 13920173 ~ 13964026 (-) True pamr1
TU98709 other downstream 1212197 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 1268587 12564348 ~ 12564966 (-) False fbxo31
TU98668 other downstream 1268679 12564348 ~ 12564874 (-) False fbxo31
TU98666 other downstream 1268755 12564348 ~ 12564798 (-) False fbxo31
XR_002650239.1 other downstream 2057414 11767509 ~ 11776139 (-) True LOC111193095
TU99163 other upstream 694067 14542209 ~ 14545438 (-) False LOC103025073
XR_002650248.1 other upstream 1913622 15761764 ~ 15778423 (-) False LOC103046265
TU100463 other upstream 4028884 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 4134605 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 5091032 18939174 ~ 18940464 (-) True G74791

Expression Profile