RNA id: XM_022671894.1


Basic Information

Item Value
RNA id XM_022671894.1
length 1092
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC103027043
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 25313291 ~ 25316315 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACCACTGGATGGCGACAATCATGCATTTGAACGAAGCCCAGATCTACGGGCTGGGTCCCAAACCGCCTCCTGCTAAAGAGGCACAGCACACTTGATGGGTATTCAGCCGATCCTGTGCTGAACGGACTGTGTAAGTGCACTAGGTAGGAGGGATGTGTGCATTTGGTATTAAGCCCGATATTTCTCACCGCGGAATTCAAACTAGAAGACAGAGCGAGAAGATTACAgcagagtgtttaaaaacagcagACACTGCAGTCACTGCAGACATGACCACTCAGCTGACTGATTCTCCCAGCACTGTGTTCTTTGATTTGGAGACTACTGGTCTGGgtTCCTCTTGTGACATTGTTCAGCTGGCAGCAGTGAGTGGCAGTCACACATTAAACCTGTTCATGGTCCCCCGCTGCAGAATAGACCCTGGGGCTTCTAGAGTCACTGGATTTAAAGTGCGGAGACAGCGGCTCTTTCTGCACCGCAGGCCTGTGCTCACCAACTCTCTGAAAGAAGCTCTGGTGTCTTTCATAACCTTCCTTGGCATGTTTGGACGCCCAATTTTGGTGGGGCACAACATTCGGCGCTTTGACTGCCTTGTTCTGGCCAGAGTTCTGGACGAGTTTGGCTTGAAAGCAGTCTTCCAGGCAAGAGTTGCAGGCTTTCTGGACAGCCTTCCTTTGGCTCGCCAGCTTCTCAAAGACAGTGGCCTCCAAAGCTTCAAGCAGGAGAACCTGGTTAAGACTGTGTTAGGTGTTTCCTATGCTGCTCACAATGCCCTGGCTGATGTACAAGCCCTACAGGAGCTTTACTGGGCTCTCAGACCCACGGCTGGCCACATTCAACAGCACACATTCAGTTTGGACTCTCTGAATACTGCAACTGTCAAGCCTGTCAGACTACCAGGACAGAGTAATCTATGTGAGAATTTCCAGAAGGCAGTGAAAGTCACAGTGAATGGCACTGGACAAGTTATTCGTCTTTTAGACAAGACAAAGGGTGTCTAGTGCACAGCAGCTGTTTTTAGTTCAATATGTGATACTGTCTGTTTTTACAAATACTTATAAAAGTTTTATGAATAAAAACCTATTTATCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103128 lncRNA upstream 21072 25293405 ~ 25293928 (+) True G76463
TU103124 lncRNA upstream 35377 25279015 ~ 25279623 (+) False LOC103026466
TU102947 lncRNA upstream 323401 24988454 ~ 24991599 (+) False LOC103022708
TU102943 lncRNA upstream 330609 24984152 ~ 24984391 (+) True G76367
TU102942 lncRNA upstream 331593 24981965 ~ 24983407 (+) False LOC103022391
TU103141 lncRNA downstream 880 25317195 ~ 25318657 (+) True G76468
TU103149 lncRNA downstream 7078 25323393 ~ 25327069 (+) True G76472
TU103191 lncRNA downstream 39949 25356264 ~ 25359567 (+) True G76505
TU103205 lncRNA downstream 68972 25385287 ~ 25390947 (+) True G76514
TU103218 lncRNA downstream 234530 25550845 ~ 25551311 (+) True G76526
XM_007235183.3 mRNA upstream 2837 25302235 ~ 25312163 (+) True LOC103045999
XM_015601854.2 mRNA upstream 2837 25302235 ~ 25312163 (+) False LOC103045999
XM_022672419.1 mRNA upstream 33629 25271256 ~ 25281371 (+) True LOC103026466
XM_022671928.1 mRNA upstream 43746 25269678 ~ 25271254 (+) True LOC111193062
XM_007235182.3 mRNA upstream 51785 25249630 ~ 25263215 (+) True hps5
XM_015601855.2 mRNA downstream 11251 25327566 ~ 25346047 (+) True LOC103046607
XM_007235188.3 mRNA downstream 290472 25606787 ~ 25613446 (+) True adpgk
XM_022672426.1 mRNA downstream 290475 25606790 ~ 25613446 (+) False adpgk
XM_022672427.1 mRNA downstream 290475 25606790 ~ 25613446 (+) False adpgk
XM_022672428.1 mRNA downstream 363778 25680093 ~ 25700055 (+) True LOC103023612
TU103131 other upstream 18532 25294501 ~ 25296468 (+) True G76464
TU103035 other upstream 130268 25184085 ~ 25184732 (+) True G76423
TU102930 other upstream 366851 24946788 ~ 24948149 (+) True G76358
TU102912 other upstream 434059 24873400 ~ 24880941 (+) True LOC111193110

Expression Profile