RNA id: XM_022671905.1


Basic Information

Item Value
RNA id XM_022671905.1
length 4722
RNA type mRNA
GC content 0.46
exon number 21
gene id LOC103032061
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6012219 ~ 6036754 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCGTAATTGTCGTTTTGGCTAAACTGGTCAGCGGAGAGGCTAACGGGTTACGGAAGGCGAGGAGAGCGCGGCGCGGCTTTCGCATCGAAAATGTCGAGCGGAGTGGGAAAACACAAAATGATGTCCCTGGGACCAACAGAGCCATGGTCCATCCGGGAGAAACTGTGCCTTGCATCCTCTGTGATGAGAAGTGGAGATCAAAATTGggtgtCCGTCAGCAGAGCTATCAAGCCATTTTCAGAGTCTGGACGTCCTCCGGACTGGTTTTCTCAGAAGCACTGTGCCTCTCAATATTCAGAGCTGTTGGAGACCACTGAAGCCCCTAAGCGCAAGCGTGGTGAAAAAGGAGAGGTGGTGGAGACTATTGAGGATGTTATTGTGCGCAGGCTGACTACTGAGAGGATTGATGAGCTCAAGAAGCTCCTCAAAGACACTCAGGAGAAATACAGaaaactgAAGAAGGAAGTAGATTTGATTCAGGCAGGTCACATGGACTCCAAACTGGAGGAGTTATGGGGGGATATTGAACAAAAGAAGAAGCAGGAGGAGGATGAGGCTGAGCAGAAGAGGAGAGCAACAGAGGCGGCCTATCAGGTTTTGGAAGGAACTCTGCAGACTATATTAGAGACTCAAGGAGTGACCGTGTTTGTGCCGATGTCTGAGCCAGCTGGGCCAGGACCTAAAGAGGGAAGCCTGGGTGCTGTTGTAGAAGAATCCCCTCAAAAAAAGCTCCTTAATCAGAAGGCCACACCACCGCCCTCCCCTTTACTGTCTGAACTGCTGAAGAAAGGCAATCTCCTATCTGCTAGCCCCAGACTGTTTTTACAAGTGGAGGCATTTTTGGCAAAGCAAAAGCATGATGTGGTGGAGGGAGAGGCTGCTGCGGCTCTCAGTAACGGTGCTCATGGGGTGGAGGTTCACACCTCCTCGACTGGTCTTCCATCTGGTCATGAAGTATCTGCAGATGCGCCCACGTTATCCCGTCTGTTGGAGTGCTCACCCACAGTCCAGATGCCAGCCAGCACTGAGCCCCCTAATCCCCCCACTGTAGCCCCCCCTGCTCCAGGACACCACTTTATACCCAGCACAGGAGCATCAGTAGCAGAGTGTTCTGGTCCTGAGACAATGCTGGCGGTGCAGACCGACTCCGAACAGACAGAGGGCCGAGAGGGAGAGCTGGTCGAGGAGAACCTCGTGGCTGTGTCTTACATGGGGGATGAACTGGACCTGGAGACTGTGGGGGATATCATTGCTATTATTGAAGAGAAGGTGGATGAATCAGTGGAGGTGTTGGATGCGGCCGCAGTGGAGGCTGCGCTCTCTCTGTGTGAGGAAGCCGTGGCTGGGGGCCATGCTCTTTCTGACCCCTGGGAGCACCAGGCCTTTAAAACAGTCGAGCCAGAGCCTAGCCTAGTTACCCCACAGCCTAGAGTTACTGCTGAGGTCCCGGCAAGTTTGCCCATCCCAGAGCCTCAGGAGGTAGAGCCAGCCATGCCGCTAGAAGACGCTGGGGAATCTGGGACAACCGAGGGGCCGCTTGGTGACTCTGAGCCTGCGGCCCCACCAGAGACGACGGTACAAACGCAGGAGCCTGAACAGCGACCACCtgaagagaaagaaggagagcaAGAAGCAATAAAGGAGGAGGAGCCAACAGCGAACAGAACACCCTGCCCTTCAGTGAAGGCTGAAAGTGAAGAGTGGGCTCAACCTGAGACTGAAACTCCCTGCCTCGACTCGGAGGACAGCTCAGCATCAGGGAGAGAACAGAAGGTGAAGGAAGAGGATGGAGGGAGTGAAGTGGATGGAGATGAAGGGATGGAGATGAAAGAGTGTGGAGAGGGTCCGTATCTCTCAGAAGTGGACCCTCCAGCCAGTGAGAGTGAGGATGGGTATGGCACCAACTCCCAGCGATACACCACTGCAGACTCCACCGCCAGCAGCCCTGCCTCCTCTCAGTTCTCCATATGCAGTGAGGATCAAGAGGCTTTGCAGGCTCAAAAGATTTGGAAGAAAGCTATCATGCTGGTGTGGCgggcagcagccaatcacagGTACGCAAGTGTATTTCTACAGCCTGTGTCTGATGACATCGCTCCTGGGTACCACAGCATTGTCCACagGCCCATGGACCTGTCAGCGATCAAGAAGAACATTGAGACAGGGCAGATCCGCACGACGGCAGAGTTCCAGCGGGACATCATGCTGATGTTCCAGAATGCAGTGATGTACAACAGCTCAGATCATGATGTTTACCACATGGCTCTGGAGATGCAGCGAGACGTCCTGGAGCAGATCCAGCAGTTCCTGGCTACCCAGCTCATCATGCAGACCTCAGAGTCCGGCATAAGTGCCAAAAGTCTGAGAGGGCGTGAGGCTAACCGCAAACAGGACCCCAACGACAAGACCCTGAGCCCAGCACACAAAGATGCACATTTAGAGCCAGAACCAGCTGCCATGCCCAGAAGGAAAAGAAACAACTCCAAACAAGATACTATGGAAAAGGACAGTCTCCCCATGGCCTCTCCtgctttccttctctctctttttGATGGAGGCACCAGGGGGCGCCGCAGCGCCATAGAAGCTGACATGAAGATGAAGAAATGAAGAGAAGTGGTGGATAGAAAACTTCAAAACCAACAAGGCTTTAAGGGCTAGACTTCCTTGCCCAAATCAATCCTGGCTGTGAATTAAACTGGAGTTAAAAAGGACCAGATAAGCTGAGAACAGAGCTCTGAGACCAGTGCTCTGATCTTAAGCAGAGCAACACTTGGTTATTCTAATATGTTCAGTTGAGGAAAAACTCATATTTAAGGCTTGAAGCTTAGTTTTTGGGATGTTCGATATGATAATCAGCCTTTATGCTTTAAGCAGGAATGTACAACTCCCATCATCGCCACATCGTCACAACGTCTGAATGTTCCTCAGCGTGCAGTAGCACCTGGAATGCGCCGCTGAAGTTGTCTCAGTTTGAAGGGACTTGGTGTCGGCTGCAGAAGAAATATCACGTGGGTCAGTGTTCTAGGATGCACGTGGGTTCCGTGCTCAGAAAAAGATTGGTTCTCGATCACAtttgtgtgtggaggtgttttAAAAGGTGTTTGTAGCATTGATTAGATGTGTGGTTCGAACCAATGGAACTTTGAAGACAGAACACAACACTCAACACTAGCATGTGTGAAGGATGAAAATGTTCTAACATAATGTCAATTAGGGAATGACATTCTAGAACAATGAAAGTCTGAAAACAATTTAAGAGCAGCATGGTTGAGAACATTCTCGAAGGGTATGGAAGTCTGTAAGCATTCTAAAAACATCAGTTTTttcaacattctagaacagtattTATGTCTGAATGCATCCTAAGAACATCACAGTTCAGAACATTCTAGAAGGCTGAAAGAATCATAAGAACAGCGTAATTGAAAATTTCTAGAATTGTACagaaattctaaataattctaAGAGTAGCGTGATTAAGAACATTCTAGAGTGGTATTGACATCTACAAGCATTCTAAGAACACAATGATTTAGAATATTCTAGAATGGTATGGAAGGCTAAAAGAATTTCAAAAACAGCATAACTGAAAATATTCTAGAACCGTAAAGAAATCAAAATAATTATAACAGCAGGATGATTAATATGACATTCTATAATGGTATTAAAGTCAGAAAGCATTCTATGAACAAAGTTCAGAGATCATTCATCCTAGAATGGCATTGAGGCCGAAAGCATTCTAAGAACATCACAGTtcagaacattctagaacagtattTAAGTCTAAAGGCATTATAAGATCATCACAGTTTGGAACATTTTTAGAATGGTATTGAGATCTAAAAGCATTCTAAGAACATCCCAGTTCAGAACATTCTAAAAGGCTGAAAGAATACTAAGAACAGCATAATTGAAAATATTCCAGAATTGTACTGAAATCCAAAATAAGCATGATTTAAGAAAATTCTACAATGGTATTGATCTCTAAAAGCAACAATGGTTTAGAATATTCTAGAATGGTATGGAAGACTGAAAGACTtctaaaaacagctgaaaacattTTACAATTGTAGAGAAATCTAAAGTAATTCTAACAACAGCatgattaataaaacatttaagtcaGAAGGTATTCTAAGGACATTAAAGTTCAGAACATTCTAGAATGGTATGAAAGTCCAAAAGAATTCTAAGTGCATAAAGATTGATTGAGTACAAAAATCCAAAGAACTGTGAGAACATCATGATTTGAACCATACTAGAATTATAAGAAAACTGAAAGCATTCTAAGAACAGCATGATTGAGATCATTCTAGTGGTATGAGTCATGTGGGAATGGATGGATATataagaacattctagaactctTTGAAAGGAGGAGAGCATTGGGTTTGTTGGGTCACTGTGCTCTGATCTTTTAAAGGATGGTGTGAAGCGGTTCTTGCTGAAGCTACTGTCTGTAGTACTTCTATGTTAAATCAAAGTAAACGTGAATTGTCTGTCAACCAATGCAGCTAAAATGTGAGTAGGAGAGCATGGAGTTGAAGTTAAAACGTGTCTGCTGGATAAATTATTTGATCAAACTGATTGTAGCTTTAACAGTGTAGAAATGGAAGGTGTTTATTTACCCAAGTGTAGTTCATATCTCGAGGTGAATTACATGTAAACGATCCTTTTCTACTTGTTTTAATTTGTGAGTTAATAAAATATTGGAATTCA

Function

GO: NA

KEGG:

id description
K11321 BRD8; bromodomain-containing protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96568 lncRNA downstream 44298 5954620 ~ 5967921 (-) True G71577
TU96531 lncRNA downstream 145691 5866305 ~ 5866528 (-) True G71554
TU96453 lncRNA downstream 332109 5679805 ~ 5680110 (-) True G71501
TU96448 lncRNA downstream 333346 5642890 ~ 5678873 (-) True G71496
TU96437 lncRNA downstream 412267 5599714 ~ 5599952 (-) True G71488
TU96623 lncRNA upstream 50085 6086839 ~ 6087111 (-) True G71612
TU96669 lncRNA upstream 117137 6153891 ~ 6178020 (-) True G71636
TU96681 lncRNA upstream 235497 6272251 ~ 6288998 (-) False G71644
TU96682 lncRNA upstream 235497 6272251 ~ 6291512 (-) True G71644
TU96690 lncRNA upstream 281475 6318229 ~ 6320682 (-) True G71646
XM_022672008.1 mRNA downstream 152849 5844641 ~ 5859370 (-) True LOC103035351
XM_007253616.3 mRNA downstream 170512 5830089 ~ 5841707 (-) False LOC103035656
XM_007253617.3 mRNA downstream 170535 5830089 ~ 5841684 (-) False LOC103035656
XM_022672006.1 mRNA downstream 211495 5770787 ~ 5800724 (-) False LOC103036182
XM_022672013.1 mRNA upstream 124901 6161655 ~ 6221853 (-) True LOC103043333
XM_007253597.3 mRNA upstream 256930 6293684 ~ 6315841 (-) True hars
XM_007253598.3 mRNA upstream 256930 6293684 ~ 6315832 (-) False hars
XM_022672025.1 mRNA upstream 485303 6522057 ~ 6538782 (-) True LOC103036141
XM_022672026.1 mRNA upstream 485303 6522057 ~ 6538781 (-) False LOC103036141
TU96529 other downstream 170532 5829621 ~ 5841687 (-) True LOC103035656
TU96400 other downstream 535844 5471666 ~ 5476375 (-) True G71458
trnaw-cca_42 other downstream 1088148 4924000 ~ 4924071 (-) True trnaw-cca_42
TU96095 other downstream 1127731 4882170 ~ 4884488 (-) True G71235
TU96020 other downstream 1599208 4411948 ~ 4413011 (-) True G71175
TU96859 other upstream 740485 6777239 ~ 6824756 (-) True G71771
TU96917 other upstream 1020356 7057110 ~ 7057643 (-) True G71826
TU96981 other upstream 1273021 7309775 ~ 7312926 (-) True G71862
TU97555 other upstream 2602784 8639538 ~ 8645601 (-) True G72336
TU97699 other upstream 3129124 9165878 ~ 9174309 (-) True G72449

Expression Profile