RNA id: XM_022671908.1


Basic Information

Item Value
RNA id XM_022671908.1
length 5734
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC111193048
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 8862120 ~ 8868955 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGGCCCTAAAAAGTTTCGATTTTGAATCCATGAAAACATTCCAGTTCCACGTGCTCGCTACAGATTCTGGAACTCCACCACTGAGCAGCAACGTCACAGTAAACGTCTTCATTCTGGATCAGAACGACAACGTTCCAGTGATCTTATATCCAGTCAGTTCTAATGGATCTGCTGAAGGTGTGGAGGAGATACCTCGCAATGTGAACGCAGGACATTTGGTAACTAAAGTAAGAGCCTATGATGCAGATATAGGATACAACGGCTGGTTATTATTTTCACTGCAGGAAGTGAGTGACCAcagtttgtttggtttggatcgctatactggacagataaggACCCTCCgttcatttacagaaacagacGAAGCTCAGCATAaactggtcatactggtcaaagACAATGGTAATGTGTCACTATCAGCAACAGCGACTGTGATGATCAAAGTTGTGGAGCCCAAAGAGGCCTTTGCTGCTTCTGATGTGAAACAGCATGTAAAAGACGAGGAGAACGGCGACGTCACTTTTTATCTGATCATCACTCTGGGTTCCGTTTCAGTGCTTTTTATCATCAGCATTGTCGTGCTGACTGTAATGCAGTGCTCCAAATCTACAGACTATTCCTCCAAATATCTGCAGGATTCAAATTATGATGGAACATTGTGTCACAGCATCCAGTACAGATCAGGGGATAAGCGCTACATGTTAGTTGGACCCAGAATGAGTATTGGTTCTACTATAGTCCCTGGAAGCAATGGAAATACTTTAGTGATACCAGATCGGAGGAGCAGAGCGTCTGGAGAGGCTACGACACAGATAAGATATTCCATTCAAGAAGAGGTAAAAGAAGGCTCAGTTGTCGGAAATATTGCTAAAGATTTGGGTCTTGATATCAGTACTTTGGTGGACAGACGGTTTCGCATTGTTTCAGGATCCAAGGACGGTCTTTTTCAGGTAAATCAAAACAATGGTGCCTTATACGTTCAAAAGAAAATCGACAGAGAGGAAATATGTGACGGCTCTGATATCTGCGTGATAAATCTTAAATTTGCTATCGAAAATCCTCTAGAAATTCATTACATTGGAGTTGAAATTATTGACGTAAACGATCACCCACCCAGTTTTGCAGAAGATCGTCTTCATTTAGAGGTAGCAGAAAATAAAGCTCCAGGGGCCCGACTTGACCTGCAGCCCGCACGTGATCCAGATGTTGGCACAAATTCGATTCGAAGTTATACACTTAGTCAAAATGAGCATTTTTTATTAGAGGTACGAGACGGTGGGGAAGACAGCCTACCCTCCCTCGTCCTACAGAAATATTTGGACCGGGAAAATGCGCGTGAACATGAATTGCAATTAAAGGCTGTAGACGGCGGAAGTCCTCCAAAATCTGGCAGCCTGAATATAACTATAACTGTCCTCGATATTAACGACAATCAGCCAATGTGCAGCGAAGACATGTACTCGATATCTATACACGAGAACGTTAGTGTCGGAACAAATATACTGAGAGTAAATGCAACAGACCCAGATGATGGTCGCAATGGACAGGTTGAATATTCGTGGGGTAGAAATacaaagagtaaaatacaagaTGTTTTTGAGGTAGATCGCACTACTGGCGAAATTCGTGTTAAAAAACAGATTGATTTTGAAGACAATCAAATGTACAGATTAAATGTACAGGCTTCTGATAAAGGACAGCCTCCACTTTCTGTCGATTGCAGAATTATTATCAAAATAATAGACGTGAACGACAATAAACCAGAAATAGAAGTAACTTCTATACTGACTGTTGTGCCAGAGGACTCAAAACCAGGAACTGTTATTTCTTTGATTAGCGTTTCAGATAAAGACTCTGGAATCAATGGAAAAATCATTTGCAGTCTTTCGAAGGATGTTCCCTTTGAACTCAAGCCATCAATTGAAAATAATATGTATTCTTTAATTACAAAAGGAGTCATGGACAGAGAAAATATATCCCAATACGACATAGTATTAACTGCCAAAGATTTGGGTCAGCCTACTATGTCCTCTATGAAAATTCTTAGCGTGCTGGTATCAGATGTAAATGACAACATTCCAGAGTTTCCGCAACATCCACTTGAGCTGTATTTGATAGAAAATAACCCGGTTGCGCCAATATTTTCGGTAAGCGCTACAGACAAAGATTTGTATGAAAATGCTGCAGTAACTTATCAAGTTATGAGAAGTGAAGCGACACTTAATGACATGTCTAATTTCATCAGTATAAATTTAGAAACAGGCGTCATAAGTGCATTAAGGAGTTTTGACTTTGAAACAACCAAAACGATGCAGTTTCACGTGCTTGCTACAGATTCTGGAACTCCAGCTTTGAGCAGCAACGTCACAGTAAACGTCTTCATTTTGGATCAGAACGACAATGTTCCAGTGATCTTATATCCAGTCAGCTCTAACGGATCCGCTGAAGGTGTAGAGGAGGTTCCACGTAATGTGAACGCAGGACATTTGGTCACTAAAGTGAGAGCCTATGACGCAGATATAGGATACAACGGCTGGTTATTGTTTTCACTACAGGAAGTGAGTGACCAcagtttgtttggtttggaccgctatactggacagataaggACCCTCCGCTCATTCACAGAGACAGACGAGTCTCAACATAAACTGGTCATACTGGTGAAAGACAATGGCAACGTTTCCCTTTCAGCAACAGCAACTGTAATTATCAAAGTTGTGGAGCCCAAAGAGGCCTTTGCAGTTTCTGATGTTAAAAACATAATGAGAGATGATGAGGACAACGATATTACATTTTATCTCATAATCACGTTGGCATCAGTTTCAGTGCTTTTTATCATTAGTATTATTGTGCTGATTGCAATGCAGTGTTCCAAATCTACAGACTATTCCTCCAAGTATTTACAAGACACAAATTATGACGGGACATTGTGTCACAGCATACAATACAGATCAGGAGATAAACGCTACATGTTAGTTGGACCCAGGATGAGTATTGGTTCTACTATAGTACCAAGCAGTAATGGAAATACTCTAGTGGTACCAGATCGCAGGAGCAGAGCCTCTGAAGAGTATGCCAATGAAGTGGTCGTATCAGTGGTTTCATCGTGTCTAAGGGGTACTTTAGTCGCCATGAATGACAACAGACAAAGGAGGATATGGGACTGCTGGAGGACTGTTTTGCAGATATCATTGCTGCTGTGCTTGGGAAAACAGGTTGCGGCTCAAATAAGGTATTCCATTCCAGAAGAGGTAAAAGAAGGATCAACTGTAGGAAATATTGCTAAGGACTTGGGTCTTGATGTTAGTACTTTAGTAGAAAGAAGGCTTCGTCTCGTTCCTGGCTCTGATATCTCCATTTTCCAGTTAAACTTAAACAATGGCGTTTTATACGTAAATAAGGAAATCGATAGAGAGAAAATATGTGATGGGAACCATCCATGCTTGATCAATTTAAAAATAGTTGTTGAAGATCCTCTTGAGATTCATTATATAGGAGTTGAAATAACAGATGTAAATGACCATTCTCCTATATTTACTGAGAAAGAAAAGCGTCTGGAGATAGCTGAATCCACTATTCAAGGAACCCGTTATCAATTACAAGCCGCTCGTGACCCTGACGTGGGTGTAAATTCAGTGCGCGTGTACAAATTAAGCCAGAACGAACATTTTGATGTGGAAATAAGGGACAGAGGAGAAGACAAACTTCCTTTCTTGGTTCTACAAAAGCCCCTGGATCGCGAGCGCAAAGCTGAGCATAGTTTAATTTTAACTGCAGTTGATGGAGGAAGTCCTAATAGATCAGGTACGTTAAACATAACCATTGTTGTTCTTGATGTTAATGACAACCATCCCGTGTTTAGTCAAGATGTATATACAACAATTTTGGAGGAAAACACGCCAATAGGAACACTAGTACTAAAAATACTGGCAAAAGATTTTGATGAAGGTCCAAATGGTGACGTGTCCTATGATTTTGGAGGTGACGAAAACGCATTCGATATTTTCGGGTTAGATAAATTTACTGGTGAAATCCGAGTAAAAGGTCAGGTAGACTTTGAAAAGAATAATATCTACAAACTAGATGTTCATGCTTCTGACAGTGGTCAGCCACCACTGACCACAGACTGTAGAGTTATTATAAAGATACTAGATGTAAATGACAACAAGCCCAACATAGAGGTGACCTCACTGTCTAGTATAGTTCCTGAAGATGCCAGACCTGGTACTGTAATTGGGCTCATTAGCGTTAATGACAGAGACAGTGGTGTAAATGGGAAAGTTGTATGTTCACTATCAGAAAGTGCACCATTCGAATTAAAGCCATCAGTTCAGGACAGCATATACGCATTAGCGACTAAGAGACATCTAGACCGAGAACTCGTCCCACATTTTGACATTACAATATATGCAACTGACTTAGGTCAGCCTTCTCTAACCACCACTAAAATACTAAGTGTCCAGATCTCAGATGTAAATGACAACAAACCAGTGTTTCTTCACAACCCTCTTGACCTCTATATAAATGAGAATAATTCTCCAGGTGCATCCGTATTTTCTGTTAGCGCATCGGACAAAGATGTTCAAGAAAATGCTTTGTTATCCTATCATATTTTAAAGTCCGAtgacaaaaacaaagacaagaTGTTATTCCTAAATATAAACTCTGAAACAGGTGTTATTTATGCACTAAAAAGTTTCGACtttgaaatgcaaaaaaagtttcAGTTCCACGTGCTCGTTACAGATTCAGGAACTCCACCACTGAGCAGCAACGTCACAGTGAACGTGTTCATTCTGGATCAGAACGACAATCTTCCAGTGATCTTATATCCAGTCAATTCTAATGGATCTGCTGAAGGTGTGGAGGAGGTTCCTCGCAATGTGAACGCAGGACATTTAGTGACTAAAGTAAGAGCCTATGACGCAGATATAGGATACAACGGCTGGTTACTATTTTCACTGCAGGAAGTGAGTGACCACAGTCTGTTTGGTTTGGATCGctatactggacagataagaACCCTCCGTGCATTCACCGAGACAGATGAAGCTCTGCATAAACTGATCATACTGGTCAAGGACAATGGCAACGTGTCCCTTTCAGCAACAGCAACGGTGATTGTCAAAGTTGTGGAGCCCAAAGAGGCGTTTGCAGCTTCTGATATAAGAAACGTAGTAAAGGACGAGGAGAATAAtgacattacattttatttgatcaTCACTTTGGGGTCAGTTTCAGTGCTTTTTATCATTAGTATCATTGTGTTAATTGTAATGCAATGTTCCACATCTACAGACTATTCCTCTAAGAATTTGCAAGATACAAATTATGATGGGACCCTTTGCCACAGCATCCAGTACAGATCAGGAGATAAACGCTACATGTTAGTTGGACCCAGAATGAGTATTGGTTCTGCTATAATTCCGGGGAGTAATGGGAATACTCTAGTGATACCAGATCGAAGAAGTAGAGCATCTGGAGAGGTAAGAGTGCTTTATTTTCCAATAATGACAAGCtctattttatgtattaatattaaatggttAGATGCTTTAATCTGCCCATTGAGAGGTTTTTGTAATGCTTTAATATTGCTTTTACGAAATGGACTGTGGAAACCAgacatatgcacacacaaaacatctccagttgtAAATTAAACGTAAAATGGTTTATAAGAATTTTGGAACCACTGATTTGCTTACAGAGATTCCTCAAGATTTT

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650234.1 lncRNA upstream 68944 8784572 ~ 8793176 (+) True LOC111193079
TU97390 lncRNA upstream 377357 8483923 ~ 8484763 (+) True G72209
TU97383 lncRNA upstream 424025 8437870 ~ 8438095 (+) True G72202
TU97373 lncRNA upstream 441815 8420064 ~ 8420305 (+) True G72192
TU97364 lncRNA upstream 460642 8401246 ~ 8401478 (+) True G72183
TU97464 lncRNA downstream 86400 8955355 ~ 9036026 (+) False LOC103030246
TU97484 lncRNA downstream 220921 9089876 ~ 9090618 (+) True G72278
TU97469 lncRNA downstream 273407 9142362 ~ 9151966 (+) True G72263
TU97492 lncRNA downstream 358560 9227515 ~ 9227886 (+) True G72285
TU97515 lncRNA downstream 723352 9592307 ~ 9639931 (+) True G72305
XM_007228007.3 mRNA upstream 4604 8826514 ~ 8857516 (+) False LOC103031822
XM_007228005.3 mRNA upstream 4604 8826514 ~ 8857516 (+) False LOC103031822
XM_022672071.1 mRNA upstream 4604 8829461 ~ 8857516 (+) False LOC103031822
XM_022672068.1 mRNA upstream 4604 8829462 ~ 8857516 (+) False LOC103031822
XM_022672067.1 mRNA upstream 4604 8832525 ~ 8857516 (+) False LOC103031822
XM_022672049.1 mRNA downstream 173 8869128 ~ 9035761 (+) False LOC103030246
XM_022672081.1 mRNA downstream 3695 8872650 ~ 8873657 (+) True LOC111193085
XM_022672048.1 mRNA downstream 6912 8875867 ~ 9035761 (+) False LOC103030246
XM_022672056.1 mRNA downstream 9984 8878939 ~ 9035761 (+) False LOC103030246
XM_022672079.1 mRNA downstream 12908 8881863 ~ 8884188 (+) True LOC111193083
TU96877 other upstream 1976579 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 2323326 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 2824372 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 2825246 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 3356482 5499908 ~ 5505638 (+) True G71414
TU97487 other downstream 273944 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 1209624 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 3734397 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 4002529 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 5779874 14648829 ~ 14649551 (+) True G73533

Expression Profile