RNA id: XM_022671909.1


Basic Information

Item Value
RNA id XM_022671909.1
length 2458
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC111193051
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9134449 ~ 9153260 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTTGCCTGTTGTTTTTCAATacttacatgtttttatttgtaataatgagTTTTCTTTGTCTGAATAGTTTTTTACCCCAAGGAACCTTTCTCAGACATGATGTTTGTATAGATTTGTGTAGTTCTTAACGGCTTTTTGAATTTTTAGTTTCTTAGTGCTCCCATtaatttttaaccactcatttGTCCTACTTTTCATTACATTGTTCCTCTCACACACAAATGAATTTGCATCTGTGTGTAGTTCTTCAAGTTGGACTCACAGTGCCGCTGTTGGTCAGCGTGTTAGAGCATGGAGGTCTAGTTTGAGCAGAGCCTCCCCCACATAATGgaaataagagagagacagagcttcTCAGACGCACTTCAGTAATAAAGAGTGCACGAAACGTCTCGCGGATAAAGAGGCCAGcgttatattatactatactttcatcatcattatcttggaattttttttttttttgagctggaTTGCTATTTTTTGGATTAACCATTTATATAATTGAGCATATCGACTTTGTTTTGTTATGGCAATCCACAAAATGACGGAGAGAACAATAGCGCGGCAAGTactgctgtttgtgtgttttttctctttcagtccAGTGCGCGGGCAGGTCAGTTACTCCATTCCTGAGGAAATGCCGAAAGGATCATTAGTCGGTAACATAGCGCAGGATTTGGGTTTAGATGTAAAGCGTCTAAAATCAGGTAAAGCTCGTGTGTTTAGCGGCGACACTACTGAATACATAGAGCTTAATAAGGAGAGGGGGGTGCTGCTGATCAAAAAGAAAATAGACCGAGAAACGCTATGCAAACAAGCCTCACCTTGCGCTCTACATTTACAAATAATTCTTGAAACCCCAATTGAGCTGTACCGCATTACTGTCGAAGTCACAGACATCAATGACAATGCGCCCAGTTTTATCAGGACGAGAAGCGCTTTGAGATCAGTGAATCTGCTGTTGTTGGTTCAAAATTCGTATTAGAAAAAGCAGTGGATGCAGATATTGGAAAAAACGGTCTACAAAGTTATATTTTATCATCGACTGATTGTTTTAATCTGAAAATCGGTACTCAGGCCGACGGAAGCAAAACAGTAGAAATGGTTTTGCAAAAACCATTAGAtcgagaaaaacaagaaaacatgtCACTCTTATTAACAGCAATCGATGGGGGAGAACCGGTGATGTCAGGAACCGTACAAATACACATCACTGTGCTTGATGTCAACGATAATGCTCCTGTTTTTACGAAGCCATTATATAAAGCTGTGATAACTGAAAATGCACCAAAAGGCACTTCAATACTAACCGTTAATGCCACTGATCAAGACAAAGGCTCAAATGGCCACGTAGGTTATACAATTTCCAGTAACATAAACAGATTGTCTGAGATGTTTCATGTAGACGAACAGGGCGTGGTGACGTTAGTTGGAGACATCGACTATGAAACCGCCAAGCATTACCAAATAGATATAGAGGCTACTGATAATGGCGGACTTTCGGATTCTAGTAAAATAATGTTAGACGTTATTGACGTAAATGATAATAAACCACTCATCACTTTGATGTCAAAATCCTCTAGTATACTTGAAGACTCACGGCCAGACACGGTGATAGCTATTATAAGTGTATCTGATCCTGATTCCGACAGCAATGGCCATGTCCACTGTAGAATAAGTGAAAGGATTCCTTTCACAATTGCGTCTACGTCCAGCGACTTTTATAGTATTGTCACAGATAGTGATCTAGATCGAGAAAGAGAGTCTGGGTATAATATCAGTGTGATGTGCTCTGATGAGGGGTCTCCGTCTCTCTCCAGCAGCGTCACTCTCACCTTACAGATATCAGACGTTAATGATAACGCTCCTGTTTTTGAGAGGAGCTCATATGAGGCCTCCATTTCAGAAAATAACACACCAGGTCTCTCCATATTCACAGTCAAAGCCAGAGACGCAGACTGGAACCAGAATGCGCGTGTTTCTTACATACTACAGGACTCGTCCGTTAACGGAGTTTCCGTCTCCTCTTACGTATCGGTCAGTGCTGATACTGGCGTTATCCACGCAGTGCGTTCTTTTGATTACGAGCAGATCAAGGATTTTAATTTCCGAGTAATAGCTCAAGATGGAGGCACCCCTCCTCTCAGCAGCAATGTGAGTGTGAAGATAGTGATTCAGGACCAGAACGATAACGCGCCTCAGGTTCTGTATCCATTGCAGACTGGTGGCTCTGTGGTGGCTGAAATTGTGCCTCGTTCAGCAGAGGTGGGCTATCTCGTGACCAAAGTGGTGGCTGTTGATGTGGACTCTGGACAGAATGCCTGGCTCTCATATAAACTGCAGAAAGCTACAGACAGGGCGCTGTTTGAAGTGGGATTACAGAATGGAGAAATAAGAACTGTGCGCCAGGTGACCGATAAAAGATACTTAACAATTTTGCACTCTGTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97484 lncRNA upstream 43831 9089876 ~ 9090618 (+) True G72278
TU97464 lncRNA upstream 98423 8955355 ~ 9036026 (+) False LOC103030246
XR_002650234.1 lncRNA upstream 341273 8784572 ~ 8793176 (+) True LOC111193079
TU97390 lncRNA upstream 649686 8483923 ~ 8484763 (+) True G72209
TU97383 lncRNA upstream 696354 8437870 ~ 8438095 (+) True G72202
TU97492 lncRNA downstream 74255 9227515 ~ 9227886 (+) True G72285
TU97515 lncRNA downstream 439047 9592307 ~ 9639931 (+) True G72305
TU97519 lncRNA downstream 444689 9597949 ~ 9651534 (+) False G72306
TU97521 lncRNA downstream 444689 9597949 ~ 9651534 (+) False G72306
TU97518 lncRNA downstream 495887 9649147 ~ 9651534 (+) True G72306
XM_022672085.1 mRNA upstream 4219 9127307 ~ 9130230 (+) True LOC103033934
XM_022672086.1 mRNA upstream 11658 9120530 ~ 9122791 (+) True LOC111193087
XM_015608816.2 mRNA upstream 34219 9097379 ~ 9100230 (+) True LOC103033622
XM_022672090.1 mRNA upstream 40972 9092223 ~ 9093477 (+) True LOC107197811
XM_007227999.3 mRNA upstream 98688 8993748 ~ 9035761 (+) False LOC103030246
XM_022672087.1 mRNA downstream 3473 9156733 ~ 9158398 (+) True LOC111193089
XM_022672084.1 mRNA downstream 5694 9158954 ~ 9162743 (+) True LOC111193086
XM_022672083.1 mRNA downstream 18062 9171322 ~ 9174899 (+) True LOC103034588
XM_015608812.2 mRNA downstream 33984 9187244 ~ 9194515 (+) True LOC107197946
XM_015608793.2 mRNA downstream 43193 9196453 ~ 9225559 (+) True LOC111188173
TU96877 other upstream 2248908 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 2595655 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 3096701 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 3097575 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 3628811 5499908 ~ 5505638 (+) True G71414
TU97933 other downstream 925319 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 3450092 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 3718224 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 5495569 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 5738274 14891534 ~ 14921003 (+) False rpgrip1l

Expression Profile