RNA id: XM_022671921.1


Basic Information

Item Value
RNA id XM_022671921.1
length 921
RNA type mRNA
GC content 0.57
exon number 1
gene id LOC111193059
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19843302 ~ 19844222 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGGTGCAAGAGGAAATCCGAGCTGTGGAGGAGGAGAGCAGGCAAGCCAGGGCAGTGGCTATGAAGCAGCAAGGCAGCTGGACGCAGGGTGGACAGGTCGTGGAAATCCCTAGTTGGAAGGACATCTGGAGCATGGAGGGGCATCGATTGAAGTTCCTGCTGATTCTCCGGTACGACGTACTTCCAACACCGACAAACCTGCAAAGGTGGAGGTTGTCAGAGGACCCATTCTGCACACGGTGCAAGAGACCAGCAAACCTCGAGCATATTCTGTCATCCTGCCAAGCAAGCCTGACCGAGGGGAGGTTCAGGTGGCGCCATGATAAAGTGCTGGCGCAACTGGCGGATGGActggagaaggagaggaagcgGAAAAGACCCCAGTCCCAAACCAAAGGCCCCCGTTTCATTGGTTTTCTTAGGCCAGGGGAAAAGGCGGGCAAGGAGGACAGGTGCGCAGGGATCCTTGGCACGGCACAGGATTGGGAAATGAGAGTGGATCTGGGAAGGCAACTCAGGTTCCCAGAAGAAATTGCCATCACCAGCCTCCGACCAGATATTGTGCTCTGGTCTCCTGCAACAAAGCAGGTGGCTTTGATAGAGTTAACGGTACCCTGGGAGGAGAGGATAGAGGAGGCACATCAGCGCAAGTTGGGGAAGTACCAGCCACTCATTGCAGAGAGCCAGCAGAGGGGCTGGAGAGCCTGGAACCTACCAGTGGAGATGGGGTGCAGGGGGTTCCCAGGACAGTCCCTCTGGAGAGCACTAGGCAGTCTTGGGGTTAGAGGTGCAACCCGCAAGAACCTAGTGAACAGCATCTCAAAGCAGGCAGAGCAGGCATCCAGGTGGCTGTGGCTGAAGCGGAGTGAACATTGGCGGAGCCAGGCAGGCAGAGAGGAGGGGAGTAGAGTTGCACGGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101114 lncRNA upstream 38326 19804766 ~ 19804976 (+) True G75034
TU101113 lncRNA upstream 43653 19799385 ~ 19799649 (+) True G75033
TU101106 lncRNA upstream 77537 19761774 ~ 19765765 (+) True G75026
TU101087 lncRNA upstream 110264 19732016 ~ 19733038 (+) True G75017
TU101058 lncRNA upstream 193918 19624659 ~ 19649384 (+) True G74995
TU101257 lncRNA downstream 216148 20060370 ~ 20122740 (+) True G75131
XR_002650258.1 lncRNA downstream 440455 20284677 ~ 20287412 (+) False LOC111193104
TU101308 lncRNA downstream 440942 20285164 ~ 20288047 (+) True LOC111193104
TU101324 lncRNA downstream 607965 20452187 ~ 20452452 (+) True G75184
TU101332 lncRNA downstream 732056 20576278 ~ 20577245 (+) True G75192
XM_007246635.2 mRNA upstream 57197 19772487 ~ 19786105 (+) True LOC103030754
XM_007246603.3 mRNA upstream 155192 19660273 ~ 19688110 (+) True LOC103047790
XM_022672271.1 mRNA upstream 252859 19574315 ~ 19590443 (+) True LOC103045341
XM_007246615.3 mRNA downstream 10376 19854598 ~ 19858835 (+) True LOC103024220
XM_007246614.3 mRNA downstream 15211 19859433 ~ 19872712 (+) True LOC103023471
XM_007246612.3 mRNA downstream 15212 19859434 ~ 19871578 (+) False LOC103023471
XM_007244243.3 mRNA downstream 170013 20014235 ~ 20024227 (+) False prr5l
XM_007244242.3 mRNA downstream 170013 20014235 ~ 20024227 (+) False prr5l
TU101007 other upstream 310229 19527991 ~ 19533073 (+) False LOC103044129
TU100801 other upstream 757746 19082816 ~ 19085556 (+) True G74832
TU100573 other upstream 1388105 18454851 ~ 18455197 (+) True G74649
TU99974 other upstream 3554973 16286676 ~ 16288329 (+) True G74169
XR_002650242.1 other upstream 4922299 14891534 ~ 14921003 (+) False rpgrip1l
TU101298 other downstream 359397 20203619 ~ 20207922 (+) True LOC103028745
TU101630 other downstream 1179034 21023256 ~ 21025128 (+) True G75383
TU101641 other downstream 1244400 21088622 ~ 21096906 (+) True G75391
XR_002650259.1 other downstream 1406245 21250467 ~ 21264776 (+) True mov10l1
TU102047 other downstream 2910930 22755152 ~ 22772561 (+) False LOC103028957

Expression Profile