RNA id: XM_022671930.1



Basic Information


Item Value
RNA id XM_022671930.1
length 1734
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC103044579
representative True

Chromosome Information


Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 178319 ~ 196283 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


TCTTCCTATCTCAGAGTCCAAACAGCACAACACATCTCAGTGTTCAGCAGCGTTAAGGATGAACCAGAAATCTCCTCAGCTGATCTATCTCTTCCAGGCAGTGCTGGTGGGAGCCATCATGGCCTGCATGATCCTGATGAACCCGATCCAGCCGGATCTCCTGGTGCAGGAGGCCTGCGGCTGTATGGAGTGTATGAGAAATGTAGAAGTGGATCCCTGGTACGCTAAACGCTACAACAGCCAGGTGCCCAGACTTATGTACACTCAAAACAGCAACCTCAGCAGCAGCACCGACAAATGGTGGCAGAGTCTTCAGGGTCGACCCAAAAACATGAACTACACTGCGATTGTGGAGACGATTTTCTCGATGTTTCCTGATGAAAATCACTATTCAGATTCTGGTCCTGATCGCTGCAGACTGTGTGCTCTGGTGGGAAACTCTGGCAACCTGGAAGGATCTCATTATGGACCATTAATAGATGCTCACGACTTCGTCATAAGGATTAATGCAGGTCCTACTGAAGGCTATGAGAGAGATGTTGGCTCGAAGACCACCCATCGCGCCATGTACCCCGAGAGCGCTGTGGACATAGACAACTCCACCCACTTCGTCCTGATACCGTTTAAAATGATTGATCTGAAGTGGATCGTCAGCATCTTCACCACCAAACACATCACACGAAGTCCTAGAAAAGTGAAAAGCTCAGTACAAGCAAACATGGACAAGGTGATGATCTTGCATCCTGAGTTTATAAAGTACGTCCATGAAAACTGGCTGGAGAAAAAGGGCAGATATCCCTCCACTGGATTCATAATGCTAGTCTTATCACTGCACATCTGTGATCAGgtGAACGTATTTGGATTTGGTGCCAGTAAAAGTGGCGTCTGGCACCATTACtttgacaaaaaatataatgtttttcacAACACAAATAACCACAAGGGAGGCAATGAATACAACCTCATTCTGCAACTCGAGAAGAAGAAGTGGATCCGTCTTTATAAAGGACTTTAATATTCAGCCGggaataattatttattgtaatttattgaCTATCATATGGAGTGacactgtatgtactgtataagGGAGATGGGagcagttttaaaaataatattactgtGCTGATTGTGACTTTTTTTGACTAATTTATAGAATTATCTTTCTAAGGCTGGGATATACATGTATCTAATGTTGGTTTTACTATAGCTGTAACTGAAATGGATGCACTAGACAGCAAAAATCACTCCATTTGTACCGATACTCCATTTGTACCGATACTCCATTTGTACCGATACTCATTTGTACAGATACTCCATTTGTACCGATACTCCATTTGTACCGATACTCCATTTGTACCGATACTCCATTTGTACCGATACTCCATTTGTATCGATACTCAATTTGTACAGATACTCAATTTGTACAGATACTCAATTTGTACCGATACTCCATTTGTACCGATACTCCAATTTTGTACCGATACTCAATTTGTACCGATACTCCATTTGTACCGATACTCCATTTGTACCGATACTCCATTTGCATCGATACTCCATTTGTACCGATACTCCATTTGTACCGATACTCCATTTGTACCGATACTCCATTTGCATCGATACTCAATTTGTATCGATACTCAATTTGTACAGATACTCAATTTGTACAGATACTCAATTTGTACCGATACTCCATTTGTATCGATACTCAATTTGTACCGATACTCAATTTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU94729 lncRNA downstream 139288 37030 ~ 39031 (-) True G70190
XR_002650221.1 lncRNA upstream 87393 283676 ~ 287042 (-) True LOC111193064
TU94865 lncRNA upstream 195079 391362 ~ 391707 (-) True G70299
TU94883 lncRNA upstream 215302 411585 ~ 411826 (-) True G70316
TU94884 lncRNA upstream 224170 420453 ~ 420734 (-) True G70317
TU94891 lncRNA upstream 239954 436237 ~ 445526 (-) False LOC111193066
XM_022671888.1 mRNA upstream 735734 932017 ~ 938184 (-) True LOC111193040
XM_015603201.2 mRNA upstream 778812 975095 ~ 982603 (-) True rps5
XM_015603200.2 mRNA upstream 778812 975095 ~ 982581 (-) False rps5
XM_022671898.1 mRNA upstream 792163 988446 ~ 1005877 (-) True LOC103041113
XM_022671899.1 mRNA upstream 813603 1009886 ~ 1035016 (-) True LOC103042850
TU95334 other upstream 2539585 2735868 ~ 2745072 (-) False tnip1
TU95670 other upstream 3151517 3347800 ~ 3353599 (-) True G70924
TU95798 other upstream 3572878 3769161 ~ 3807099 (-) False LOC103042226
TU96020 other upstream 4215665 4411948 ~ 4413011 (-) True G71175
TU96095 other upstream 4685887 4882170 ~ 4884488 (-) True G71235

Expression Profile