RNA id: XM_022671944.1


Basic Information

Item Value
RNA id XM_022671944.1
length 1640
RNA type mRNA
GC content 0.51
exon number 8
gene id LOC103026657
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 2435680 ~ 2488996 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCAGtatcgctgctgctgctgctgctttaatggATGTGGATGGTGTGTTGTTGTGTTCGGGACGTTTAAAACAAGGTTAAAGAGCGGAGAGCCGGGTGTCAGCGGGTCGGGCGGGTTCGGGCAGCGGTTCTGGCTCGGTTCGGCTGTGTGTTCGGGGCTGTGTGAGGAGTTTTAGCCCGCTGTGTGagtgtggaggaggaggaggagagggcgctgagctgctgctgctgctgctggttctgttgtggtggtggtggtggttgttgttgttgttagctAGTTATAGTTAGCTTAGTCAGCTGAGCTGGCTTGGCTGAGCTGGTTGATCTGAACTCCAGCTGCTCTAAAGGCTGATTTAAGCGAGTTCTGAGCCTCTGAATCAGACACTCTGAATGTATCTGCCGTTACTGGACCGGGTTCCTGCCTTTAAGTCGTGTTATTGCGGGCTGAGGACGGGTTTAAAGCTGGTAATCTGTAGGACAGAGAGCCCTGGAGGAAGTGACTTAAGCTGTTTAGTGAGTTAGTTGGAAGTTTAACTCAGGATGAGTAGAAAACACCAGCATTTTAAAGGAGCTGAAGTGAGCTGCTGTGTGAAATACTTTCTATTCGGATTCAACATCATATTCTGGttGCTGGGAGCGGCGTTCCTGGGTATTGGACTCTGGGCATGGGCTGAAAAGgGAGTGCTGTCCAACATCTCGTCCATCACAGACCTGGGCGGATTCGACCCCGTGTGGCTCTTCATTGTGGTGGGAGGGGTCATGTTCATCCTGGGCTTCGCCGGCTGCATCGGGGCGCTCCGCGAAAACACAGTCCTGCTCAAATTCttttcagttttcttaGGGCTCATCTTTTTCTTGGAGCTGACCGCTGGAATCCTGGCCTTCGTTTTTAAGGACTGGATCAAAGACCAGCTCAACTTCTTCATCAACAACAACGTCAAAGCGTACCGGGACGACATTGACCTGCAGAACCTCATCGATTTCGCCCAGGAATATtggtTATGCTGTGGTGCCCACGGGCCAAACGACTGGAACCTGAACATCTACTTCAACTGCACGGAGCTGAACCCCAGCCGAGAGCGCTGCGGAGTGCCTTTCTCCTGCTGCGTCAAAGACCCTGCTGGAGATGTCCTAAACACACAGTGTGGATATGATGTACGGCTTCAAGGAgAGCTGGCTCAGCAGGAGTTTATCTACACTAAGGGCTGCGTGGGTCAGTTTGAGAAGTGGCTGCAGGAGAATCTGATCGTGGTGGCTGGAATCTTCGTGGGTATTGCACTATTACAGATCTTTGGCATCTGTCTGGCCCAGAACCTCGTGAGTGATATCAAAGCGGTGAAAGCGAACTGGTGACCCGCGGCTGGCCTGGAGAGGAGAAGCCGGGCTCTGCGGGCGACGTTCGGGACCTGTGTGTCGCGTGGGTGGCGAAAGAGCACTGTTTACACGCCCACAGAGTGGAACCCCCTCTCACAGCTGTTCTCTGGAGCTTTATGTAAGCTGATGTTACAGAAATAGTgacattctgtctctctctctctctttctgtctctctctctgtctgtctgtttgtttctttctgtctctgtctttccatatatttttttattttattctcccACCACTATATTTGTTTTtggt

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K10303 FBXO23, TSPAN17; F-box protein 23

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95278 lncRNA downstream 778 2419559 ~ 2434902 (-) False G70629
TU95277 lncRNA downstream 778 2432450 ~ 2434902 (-) True G70629
TU95291 lncRNA downstream 3312 2424036 ~ 2432368 (-) True G70632
TU95275 lncRNA downstream 31815 2403411 ~ 2403865 (-) True G70628
TU95271 lncRNA downstream 51513 2381317 ~ 2384167 (-) True G70624
TU95328 lncRNA upstream 80891 2569887 ~ 2616400 (-) True G70662
TU95344 lncRNA upstream 149566 2638562 ~ 2703705 (-) True G70666
TU95353 lncRNA upstream 184143 2673139 ~ 2701134 (-) False G70672
TU95354 lncRNA upstream 201759 2690755 ~ 2701134 (-) True G70672
TU95352 lncRNA upstream 202932 2691928 ~ 2701134 (-) False G70672
XM_022671943.1 mRNA downstream 215316 1998156 ~ 2220364 (-) True LOC103026956
XM_022671899.1 mRNA downstream 1400664 1009886 ~ 1035016 (-) True LOC103042850
XM_022671898.1 mRNA downstream 1429803 988446 ~ 1005877 (-) True LOC103041113
XM_015603201.2 mRNA downstream 1453077 975095 ~ 982603 (-) True rps5
XM_015603200.2 mRNA downstream 1453099 975095 ~ 982581 (-) False rps5
XM_022671945.1 mRNA upstream 11992 2500988 ~ 2535981 (-) True LOC103022920
XM_007257740.3 mRNA upstream 172515 2661511 ~ 2678905 (-) False dctn4
XM_007257739.3 mRNA upstream 172515 2661511 ~ 2678905 (-) True dctn4
XM_022671946.1 mRNA upstream 215199 2704195 ~ 2742373 (-) True tnip1
XM_022671950.1 mRNA upstream 275149 2764145 ~ 2816534 (-) False anxa6
TU95334 other upstream 246872 2735868 ~ 2745072 (-) False tnip1
TU95670 other upstream 858804 3347800 ~ 3353599 (-) True G70924
TU95798 other upstream 1280165 3769161 ~ 3807099 (-) False LOC103042226
TU96020 other upstream 1922952 4411948 ~ 4413011 (-) True G71175
TU96095 other upstream 2393174 4882170 ~ 4884488 (-) True G71235

Expression Profile