RNA id: XM_022671945.1


Basic Information

Item Value
RNA id XM_022671945.1
length 5844
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC103022920
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 2500988 ~ 2535981 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

actccagagagagagagagagagagagacctctAAGCAGATGTAGTGGgtggaagctttttttttccttttttcccgcAAGTCCAAAGAGCTAGAAACCCCCCTCCCATCTGAGCCACTCTGACCTCCAgtcagaaacacaaacacaaagcttCGGTCAAGCCTGGACAGGCAGAGAAGCAAGCAGACGAGACGCTACAGACCACAAGACGCTTCCTCGCTCTTAAAACTCCTAAACTAATAACCTCCGCTGAACTTTCTCCAGCCTCGGGCCAGGAGGAAAGGATGGAGCAGGAGCACGACCCCGTCAGGAGAGGTGTCAGCTGGTCAGGGCCCGGGGCTACCACGCTGACCACGCTGGGAAGAGCCGAATCGCAGGAAACCCACGAAGAAGTGATCTCCTGTGGGGAAAGCGAGGACAGGACTAGCCCTCATGGATGGGAGAAGGAGAAGCACAGCTGGGTCAAAGTGAAGCCAGCCCTGACCTCTGGCTCCAGCCGGCTGGGACGCAAAACAAACCTCAGCCGAAGTGCCAGTCTCTCAGAGAAGGAGCTGAAGGAAGCACGAACACGAAGTCAGATCATTGCTGCACAGCTGACCATTTCGTCCAACCCCAACTCCAGAGGCGTCCAGCTTTTTAATCGACGGAGACAGAGGGTGAATGCCTTCACATTAGTGAGTGTAGGAGGAGGAGGCAACAACGAGTCCAGGAATGAACCGTACTCTCCTGCTTCAAGCACATTGACATGGGACAGAGACCACTCGCCTGACAACCAGTTCAAAGACTCACAGAATCACAGACGCAGTCAAACGCAAGTCCTGCAGGGACGTGACATGGAAGCAGGGGAGGTAGAGCGTGAGCTGGCAGATGTGGAGGACAGTGCAGGAGACAGACACTTTCTCCCTGTAAATGAGAAGGATGAGGAGATACTTGAAGAAGCAAAGGATGAGGTTACCTCTCTTGGCGACAGTACCACTGCAGTTCTTGATCAAGATGAACGAGAGGAACTGGAATTAAAAGCAGAGGCTTTTAAAGACATGCCGAACGGCTGCCACAGCGCACAACCCAATGGAGATGCATCCAAGCCAATGGCAAAGCAGCCAACCATTGTGAACAGGACAGCTCGACCCTTTTTCTCTCCAGCCACGGTGACCATGGCTAGTTCTGGGAGTCCTGCTCCAGACATCCCTCCAGCACTCTCCTACTCAACTCCTCCACTTACCTCTAACCAGGTACCACTCAGCAGTGCATATTCTGACCCACAACCACCAACCCGTGTCGATCCACCTTTCCCAGTGTTATCCAGACCAGCGTTCTCCCCTCCACCTCCTGCACCTTCGTACCCAACCCCTCCGCTTCCCACCTACATGAGCCCACCTCAGTCTATCCATTCAAACCCACCACCCTCCACCATGTCTGTCACATCACCTCCTCCCACCCCCACCTACTACGCTCCCCCGACTGCACCTCGGCCATTGTTTGTCCCTCAGTTCTTGAGCGAGAGAAGGTCGCTGACTCCCATTCGTACGGGAATTCTGGATGAAGGCGTTGTGCGGAGGTCCACGCGCAAGTCCATGTTCACGTTTCAGGAGAAGCCCAAGTTAGCTCCAAACCCTGAGCTTCTGTCACTGGTCCAGGGGACAGATCAGATGAGAAGAGGGAGGGGACAACCAGAGCCACAACAGCCAGAAGAGGAGCTGCTTGCCCTTGGTGCAGAGGCCTCCAATTTCCTAGCCAAAGATGGGGGCGGAGTGGAGGAGGCCTTGGTGCCAGAGTGGGCCTCCACACTCAAAAGCTCAAGGACTCGCAGCAGGATGGAGCACAAGCCAGAGCAAGCCCTGACTGATGCATCTGGTAAGGGAGCAGAGCTTTTTGCCAAGCGTCAGACCAGGATGGAGAAGTATGTCCATGAACACAAAGCCGGACCGAGGTCTCCTTCTCCGACTTCATCCCTGCCTCCTTCTTGGGTGTATCCATCAAACATGCCGGGTCGAGTCAAGGCTATCGTCAGCTCTTCCAATATCAGTGCAGAGATTACGAAATCTCTCAAAGTCAAGCAGGCCACGCAGAAGAAGAATGTTCCAGCAAAGATACAAGTATCTATTCCACCTCCAGTGCCAGAAACCCCAGCTTTGGAGAATGGCTGCAGCAGAGTGGAAATGGAACTGTCTAGGCACCAACCGTACCAGCTCAGTTCCTCCTTGTTCATCCTTAACCCAACCAAGGACCCCATGAGCACCCTTCCAAAAGCAGCACCACCACCAAAACCTGTACTGGCTGGATCCTCCTTCCCCAGACAGACCTCTCTCCCAGCAAGCCCCATCACCACCCAGTACAGTCCCTCAGCTGCCTACATATCTGCCCATTGCTTCTCACCCACCATGATGCCTCCAGGGTCCATGAGCAGTGGCCTCCAGTCAACTCCTGTGTCAGGTTTAGCGCCAGAACGTGTGGCTTCACCGAGGTCGGCTGCACAGGCACCCAAGCCAACCTTCTCTGCCAAGAAAGCTGGAATTGCCCCACAGGTTAAGGAAGAGTTACCAACTGCAGCTCCATCCAGCCGCTCAAGCACTCCAACGCCCTGGACGCCCAACCTTTCACGCCGCCTCAGCAGCCCTGAGGGCCCCTCGAGTCCAGTTTGGTCCCCCATCAGCCATCGCAGCACTTTGGTCACCTCCCCACCCCCTAGACCCATCCATAACCGAGTGACATCCTCCCCATCCCCTTCTTCATCATCCCCAAGACCCTTCTATGATCCGGTTACCTTCTCACCAACCCCAAAGTCAATCAAAAACCCCATCACCTCCCCTTCAACCCCAAGAGCATTCCAAAACACCAACCCAGTCCCACCATTCTCCAGGCCTGTCAACAACCGCACTGCCACGTCTCCAGTGTCTCCACCCTGGGAGACAAGGTGCCAATCCCCCATCAGCCCCCAGGACACCAAGGCCAATCACCGCCTCCTGGCCAAGAACATCATCAATGCAGCCAAGCGGAAAAACAGCCCCTCACCTGGGGCTCTAAGTGGACACAGTCTTCCTATGTCACCTGTAAGCAGCAGCATCCTGCCCTTCGAACACAAACCTGTGAGTCCATTTCAGTCTCGCTCACTGGGGGCCCAGTCCCCAACCTTCACCAGCCCCCCGCCTACTCCTACAGGCATGGTGCGGTCCCCCCTGCGACTCTACAACACCCGGTCGCTCACCGATTCTGATGCCTCGCTGGAATCCGAGGATTCGGGTGTGCGTTCATCTGGGGTGCGCAGCTACAACACCTGCCCACGTGGCTGGACTGGGAGTCTGAGAGTGAAAAGAGGAGGAATGTCCGAAGACCTGTAGGATGAAAGGGCTATGGGAGATGACAAACTGATGCTGGATGACAAACTGATAAACTGACAAACTGACAAACTGGCCAAGACAGTGGACCAAATGTTGATGGACCACCTGCAATGGGCTTCAACTACCCTCTTGGAAATGTACCTGCCTAAAGAGTTAAAGTCCAATCCCAAACTTGCTATGCTACCTTGCTACCTTGGATGTTCCTCAGTTGCAATATCCTAAAGAGTAGACTTGTGTACCTGGGATTAACCTTCTTGTCAAGTGACCAGGCAAAAGCAAACAAGACTTTAAGATGTTGACTGCTAAACATAGCTTCTTACCAAATGTGGGACCAAACTTTCATAGTCAAATATTGGTTGTACCAAGTGAACTAAAATACCTGGCATTCTTGTGATTTATGGGAACTTCAGTATTGTTTTGATATCAAGCCTCAAACTCATGTCATTATTCTACCAGTGCAATTAATTGTAATGCCTCAAGCATTTCACATTTAGGTTGAAGCTCAATGCAAGCAGAAAAGTTGATTGGCCTGATGGCCAATGAAGTATAGAACAAGTCTCAAACAGATACAAGCTCCTGTCAGTACTCAACCTATGCAGTTtaatgaaacatatttttttcaaatttgggATGGACCTTAACTCTGCAGGAAGGTTGGATAACTTGATGGCCAATGGAGTATAGAACAAGCCTCCAACTGATGCAAGCTGTTGCGAGTACTCAACCTTTTTGGTTTTATGGAATGGATTTGTACGTTGTGTTTCAGATTTGGATTTGAACTCTACCCTGCCCAAAGGTCCAAAGGGCTGCTGGCCAATGGAATACAGAACTTGTCTGCAACTGATGCTACCTTTTTATGTCAATGGGACGGAATTGGAGCTAGGCATCAAGCAAGTCAACAAGCCCTTAGTATGGTTCAGCTTTGGGTTGGACCTCAACTCTGTAGGGAGGTTGAAAGGGTGGATGGCCAATTGAGTACAGAACAAGTCACCAACTGATGCAAGCTGTTGTCAGTACTGTTCTTATTCAATTGTATGGAATGTATTTGGAAGCTGGGCATCAAGCAAGTCAACAAGAttctttgtgatttttttagattttggtTGGACCTCTAATCTGTAGGAAGTTTGAAAGTGTTGATGGCCAGTTGAGTACAGAACAAGGCTCCAACTGATGCAAGCTGTTGTCAGTACTGTTCTTATTCAATTCTATAGAATGGATTTGGAAGCTGGTCATCAGACAAGATTTGGGTTGAACCTCAACTCTGCAGGAAGGTTGAAAGGGTTGATGTCCAATTGAGCAGCGAATGGACTATAAACTAGAGACTCTTGGGCCGTTCTATTCCTGCTGTTTTAATTCCAAAGTGGCCTTTAATTTCAGAATGTAATGCTGGAGTTTGGGATTTGCTAACTGCCAGTGTTGAAGACTTGGGTTTATGAAGCAATAATGAAAATACTTTATCTTCTAATTCAGTGGCATTCAGTCCCAGTCATCAAGACACCAACTTCACCCCTTTGCTTTGTGTTTTACCAACTCGTACACATCTGATTTAGCTCTTGAAGGGATTGGTAATGGGCACTTTTGCACCTGAAGACATTTCTTCAATTCCTTTGCACCTTACTGTATACAGTCAGCATGCTCATGTGGTGTTCACACAGGCGAAACATGGGCTAAGTGGGTTCCCATGGACTTTGAATGGAAACCAAGTTGGGCTTCCTAATTTGGCCCCTATTGTTACAGTCAACCTTAATTCATGGACAAAAGTTTATGGTCTAAGTGTCTAAAGTTGGGCTTTTCTTACAAGCCCTACATAGGTATGTTACACGGGCAGTTATTTTGATAATCTATGCAGTACATGGACTGGAACAGTTCTTAACCAAAGACATTCCATTGCTTCTAGTGACCAAAGAAATAACCAACATGCAAGAACCTTCACAGCAGTGCTAGAAGGTCTTATTTTCTGTGTTGTCTCTTCTTGTATAATTCTAAAACaagcttttttttacatagagtTGCTTTGCAAAGATTTGAGAGTACAAGAACGTAGTTTGTGGATGAAGTTTTGGGTCTGACACAAACCAAATGTGGAAGGAATCTATTGGTACATAATGGATGATTGTCGTTTTTTTGGAAGTTTAATAGGATAATAATAACGATGACAGTTGACAGTTGACAGTTCACTTTGGATGTCATGAATGTTGTATATGAGTTACAGTATGTACAAAGTTGATGTGAGCTGGTGTTTAAACAAGGGATTATGGCActatgcttttcttttttcgAGTGCAAACCATATGGACAATGCTGGTGACTTGCAATTTAACCGAAAACTCTGCAATATACTGTTTACATGCCTATGTGTCTGTATATACTGATGATTTTACCATTCACAATGcttaaaatatgcaaaaaatacaagGTAAAGCGTTATCGGGAGAATATAGAACTGAGTCTAGAGGCTTGCATACTGAATTACGTCATGTAAactgtagaaataaaaaaaaaa

Function

GO: NA

KEGG:

id description
K21112 SYNPO; synaptopodin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95292 lncRNA downstream 45524 2424036 ~ 2455464 (-) False G70632
TU95293 lncRNA downstream 45524 2424036 ~ 2455464 (-) False G70632
TU95278 lncRNA downstream 66086 2419559 ~ 2434902 (-) False G70629
TU95277 lncRNA downstream 66086 2432450 ~ 2434902 (-) True G70629
TU95291 lncRNA downstream 68620 2424036 ~ 2432368 (-) True G70632
TU95328 lncRNA upstream 33906 2569887 ~ 2616400 (-) True G70662
TU95344 lncRNA upstream 102581 2638562 ~ 2703705 (-) True G70666
TU95353 lncRNA upstream 137158 2673139 ~ 2701134 (-) False G70672
TU95354 lncRNA upstream 154774 2690755 ~ 2701134 (-) True G70672
TU95352 lncRNA upstream 155947 2691928 ~ 2701134 (-) False G70672
XM_022671944.1 mRNA downstream 11992 2435680 ~ 2488996 (-) True LOC103026657
XM_022671943.1 mRNA downstream 280624 1998156 ~ 2220364 (-) True LOC103026956
XM_022671899.1 mRNA downstream 1465972 1009886 ~ 1035016 (-) True LOC103042850
XM_022671898.1 mRNA downstream 1495111 988446 ~ 1005877 (-) True LOC103041113
XM_015603201.2 mRNA downstream 1518385 975095 ~ 982603 (-) True rps5
XM_007257740.3 mRNA upstream 125530 2661511 ~ 2678905 (-) False dctn4
XM_007257739.3 mRNA upstream 125530 2661511 ~ 2678905 (-) True dctn4
XM_022671946.1 mRNA upstream 168214 2704195 ~ 2742373 (-) True tnip1
XM_022671950.1 mRNA upstream 228164 2764145 ~ 2816534 (-) False anxa6
XM_022671948.1 mRNA upstream 228164 2764145 ~ 2816534 (-) True anxa6
TU95334 other upstream 199887 2735868 ~ 2745072 (-) False tnip1
TU95670 other upstream 811819 3347800 ~ 3353599 (-) True G70924
TU95798 other upstream 1233180 3769161 ~ 3807099 (-) False LOC103042226
TU96020 other upstream 1875967 4411948 ~ 4413011 (-) True G71175
TU96095 other upstream 2346189 4882170 ~ 4884488 (-) True G71235

Expression Profile