RNA id: XM_022671951.1


Basic Information

Item Value
RNA id XM_022671951.1
length 2160
RNA type mRNA
GC content 0.51
exon number 25
gene id anxa6
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 2764145 ~ 2816535 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTCAGAGGAGCCGCAGAAGCGAGTGGACCGGGAACAGCTGCTGCTTCTTCTGAGCAGGAGGGTCTCAGTCAGCCTGGATCAGTACAGAGGACTGGAGCTtcaccaccaaacaccacccGAGgTTCAATTTTAATCCATCATTCCACGATCACCCTCCAGCTGAGACAATCATGGGCAAGGGATTCAGAGGCACGGTGGCCGATTTCCCAGACTTTGACGCCAATGGCGACGCCGAAGCTCTTTACAATGCTATGAAAGGCTTTGGAAGCGATAAGGAGGCTATTTTGGACCTGGTCACCTCTAGAAGCAACGGTCAGAGACAGGAGATCCGCTCTGCATACAAATCACTCTACGGGAAGGACTTGATTGAGGATCTGAAGTATGAACTGACGGGGAAGTTTGAGCGTCTGATCGTCAGTTTAATGCGACCTCCAGCTTATCATGATGCTAAAGAAATCAAGGATGCGATCAAGGGAGCCGGGACAGATGAGAAATGCCTGATTGAAATTCTCGCCTCCAGGACTAACCAACAAATCCACGACCTTGTGGCGGCATACAACGATGCGTACGGTCGAGACATTGAGCAAGACATTATAGGAGACACTTCAGGACACTTTAAGAAGATGCTGGTTGTTCTGCTCCAGGGGACCAGAGAAGACGATGGTGTGGTACATGAAGAGGTTATAGAGGAAGATGCACAGgcCCTGTACGCTGCAGGTGAAGAGCAGTGGGGGACGGATGAGTCGATCTTCATCATGCTCCTGGGGAACCGGAGTGTGACCCACCTACAACTGGtGTTTGACGAGTATCAGAAGATAGCGGAGAAGTCGATTGAGGACAGCATTAAGAGCGAGCTGTCGGGGGATTTTGAGAGGCTGATGCTGGCTGTGGTGCAGTGTATCAGGAGTCGGCCCATGTTCTTCGCCAAGCGTCTCTACAAATCCATGAAGGGTTTGGGTACAGCTGATAACACTCTGATCAGAATAATGATTTCCCGATCAGAGATCGATATGTTGGACATTAGAGAGTGCTTCAGGCTGCGCTATGAGAAATCTCTACACAACATGATTCAGGACGACACTTCTGGAGAGTACAAGCgcactctgctgaagctgtgCGGTGGAGATGACGAtattgcaGGAGAGTTCTTCCCTGAAGCCGCTCAGATCGCCTACAAGATGTGGGAAATCAGCGCCATGACCAAAGTCCAGCTGAGGGGAACAGTCCACCCTATCTCAGACTTCGATCCCGGCAGTGATGCTCAGGACCTGAGGAAGGCCATGAAGGGCTTTGGAACGGACGAGGACACGATCATCGAAATTGTTGCGAAAAGGAGCAACGAACAGCGACAGGAGATCAGACACGTCTTCAAATCAATACTGGGACGGGACCTGATGGCAGATCTGAAGTCAGAGCTTTCTAAGAATCTGTGCCGTCTGATCATGGGCCTGATGATGACCCCGGCAGAGTTTGATGCCAAAATGATGAAGAAAGCCATGGAGGGAGCTGGGACAGATGAACACGCTTTAATTGAGATTCTGGTGACCAGGAGCAACCAGGAGATCCAGGATATGTGTGCTGCTTACAAGAAAGCCTTTAAGAAGAACCTGGAGGACGCCATTCGCTCCGACACCTCAGGACACTTCTGTCGTATCCTGGTCTCCCTGGCTCAGGGAGCACGTGATGAAGGCCCTGCTGACATGGGGAGAGCAGAAGAAGATGCCCAAGCCCTGGCCGACGCCTGCAACGCTGAGTCTGACGAGATGATGGATAAGTTCATGAGTATTCTGTGCACGCGGAGTTTCCCCCACCTGAGGAGAGTCTTCCAGGAGTTTGTCAGGTGCTCCAACAAGGACATCGAGCAGATCATCAAGAAGGAGATGTCTGGGGACATCAAAAATGCCATGTATGCTATCGTGAGGAGTGTGAAGAACCAGCCCTCGTACTTGGCAGATCGTCTGTACAAAGCCATGAAGGGTCTTGGTACTGATGACAGAGCTCTGATCCGCATCATGGTGTCTCGCTCCGAGATCGACCTCTTCAACATCCGCAAGGAATTCAAGGACACCCACGACACCTCGCTCCACGACTTCATCCAGGGAGACACATCAGGAGATTACAGGAAGACTCTGCTGATACTGTGCGGTGGTGAGGATTAG

Function

GO:

id name namespace
GO:0001778 plasma membrane repair biological_process
GO:0005509 calcium ion binding molecular_function
GO:0005544 calcium-dependent phospholipid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95355 lncRNA downstream 6688 2757143 ~ 2757834 (-) True G70673
TU95353 lncRNA downstream 63388 2673139 ~ 2701134 (-) False G70672
TU95390 lncRNA upstream 33416 2849950 ~ 2850374 (-) True G70703
TU95415 lncRNA upstream 63390 2879924 ~ 2880124 (-) True G70728
TU95417 lncRNA upstream 65948 2882482 ~ 2882965 (-) True G70730
TU95420 lncRNA upstream 103508 2920042 ~ 2920385 (-) True G70733
TU95422 lncRNA upstream 124519 2941053 ~ 2941636 (-) True G70735
XM_022671946.1 mRNA downstream 22149 2704195 ~ 2742373 (-) True tnip1
XM_007257740.3 mRNA downstream 85617 2661511 ~ 2678905 (-) False dctn4
XM_007257739.3 mRNA downstream 85617 2661511 ~ 2678905 (-) True dctn4
XM_022671945.1 mRNA downstream 228541 2500988 ~ 2535981 (-) True LOC103022920
XM_022671944.1 mRNA downstream 275526 2435680 ~ 2488996 (-) True LOC103026657
XM_007257737.3 mRNA upstream 142115 2958649 ~ 2982646 (-) True rmnd5b
XM_022671901.1 mRNA upstream 165513 2982047 ~ 3019753 (-) True LOC103025117
XM_007257736.3 mRNA upstream 206885 3023419 ~ 3027693 (-) True LOC103047641
XM_007257732.3 mRNA upstream 481676 3298210 ~ 3317552 (-) False tmem65
XM_022671966.1 mRNA upstream 481676 3298210 ~ 3317552 (-) True tmem65
TU95334 other downstream 19450 2735868 ~ 2745072 (-) False tnip1
TU95670 other upstream 531266 3347800 ~ 3353599 (-) True G70924
TU95798 other upstream 952627 3769161 ~ 3807099 (-) False LOC103042226
TU96020 other upstream 1595414 4411948 ~ 4413011 (-) True G71175
TU96095 other upstream 2065636 4882170 ~ 4884488 (-) True G71235
trnaw-cca_42 other upstream 2107466 4924000 ~ 4924071 (-) True trnaw-cca_42

Expression Profile