RNA id: XM_022671954.1


Basic Information

Item Value
RNA id XM_022671954.1
length 2201
RNA type mRNA
GC content 0.52
exon number 14
gene id LOC103025734
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 2828409 ~ 2854104 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGAGAGTAAACAGAGAAGCTGGATATATTTACCATAGGAGCAGCCTGCAGCAGCATCCGGAGAAGagtaaagaaaagaagaaagaatgaCTCCAAGATTATCTGAGCTCAGAAACCTGAAAGCATGAACACTGAGTGACAGGACACGCGTGCTGGAGCTGAGGATCGAGCACAGCTGATCATGAGTGGACAGAAGATTTGTGCGTTTCTGCGAGGGCTCTCCCGCAGGAAGCCCCTGGAGCCCGAGGGCGAGGTGTCCACGTTCCGCCGCTGTCTGAGCACGGTGGACCTGGTGGCTCTGGGCGTGGGCAGCACGCTCGGCGCTGGAGTTTATGTGCTGTCCGGTGAAGTTGCCCGGTCGCTGTCCGGCCCCAGCATCATCATCTCCTTCCTCATCGCTGCTCTGGCCTCCATATTCGCCGGCCTGTGCTACGCCGAGTTCGGCTCCAGAGTGCCCAAGACCGGCTCGGCGTATCTCTACAGCTACGTCACCGTGGGGGAGGTGTGGGCCTTCATCACCGGGTGGAACCTGCTGCTGTCCTACGTCATAGGCGCCTCCAGCGTGGCCCGAGCTTGGAGCGGCACCTTTGATGACCTCATTGGAAATGTGATGGCGAATTACTTCAGCAAACACGCCGCCATGGGGCTGCCTGGCCTGGCTCCTTACCCAGACATCTTTGCAGCTGGCCTCATCATGCTTCTCACTGGGCTCCTTGCTTTTGGAGTAAAAGAGTCAACCACAGTCAACAAGATTTTCACCAGTGTTAATATACTGGTGCTGGTGTTCGTCATCATCTCCGGCTTCATTAAGGGGAACCTGGCCAACTGGAACATCACTGAGACAACCTTGCTGAATGTGACAGCAGAACTGGAAAACGTGACATTCTCGCTGAACGTGACCTCCGAGTTCGGGGTCGGTGGGTTCTTCCCGTACGGGTTTGAGGGCACTCTGGCCGGAGCTGCGACGTGTTTCTACGCATTCGTGGGGTTTGACTGCATTGCAACTACAGGGGAGGAGGTGAAGAACCCTCAGAAGTCCATCCCTCTGGGGATCGTCTTCGCTCTGCTGATCTGTTTCCTGGCGTATTTCGGCGTGTCAGCTGCTCTCACTCTGATGATGCCGTACTACCTGCTCAACATCCACAGCCCTCTGCCCGTCGCTTTCTCCTATATAGGCTGGTCTGCGGCCAAGTATGTGGTGGCTGTGGGATCCCTGTGTGCTCTTTCTACCAgTCTCCTGGGTGCCATGTTCCCGATGCCTCGAGTGATATTTGCTATGGCCAGAGACGGCCTCCTCTTTAAAGTGCTGTGTAGAGTCAGCGCAAGGAAGAGCCCGGTGGCAGCAACTGTCGCTTCTGGATCCATAGCAGCAATAATGGCACTGTTATTCGACCTGAAGGCACTGGTTGATATGATGTCTATTGGAACGCTCTTCGCCTACACGCTGGTGGCCATCTGTATTCTCATACTCAGGTATCAGGAGATGGAGTCTGCAGACAATGATGTTCACATCACACAGACCTCCGCGTTCGAAATATTAaaacctccctctctccccacCAAAAAAACCTCCAACACCGTCACCGGATGTACCATATTCATCAtctttCTGGTGTTGATTCTGACAGTACTGTTGAGTAAGGGGATCagggatctgctgctgctggaggtttgggttctggtgtgtgtgtctgttataCTGTTCCTGATAGTGGTCAGCGTTCTGCTGATCTGGAGACAGCCGCAGAACCCCAGCAAAGCCACCTTCAtggtaccTTTCCTGCCTTTACTCCCTGTGGTGAGTGTGTTCATTAACACCTATCTGATGGTTCAGCTGGGAGGGGACACATGGATCCGCTATGCTGTCTGGATGGCTGTGGGACTTCTGATCTACTTCGGCTACGGCGTGAGGAACAGTGTGCAGAAACAGAGGCTGCTGggaaacatcatcatcatcgaaACCACTGAGACCAAACCTGAGAAAGAGGAGACCAAAGGAGGAGAAAGCACCGCCTCCAAGAGTTAAACCCCTCCCACCGGCCAGCGTTCACCAATCAGCATCAACCCTCAACTCTTATATCTCTAATATCACTTCATCTACTTTAATCACATTCCACTGTAAAGATGATAAATATgtgcttgtattttttatacctgtttttgtaatgtttccTGTCATTTTATAACATAGACCTAATGTC

Function

GO:

id name namespace
GO:0003333 amino acid transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95360 lncRNA upstream 48006 2764038 ~ 2780403 (+) True G70678
TU95364 lncRNA upstream 52838 2772613 ~ 2775571 (+) True G70680
TU95358 lncRNA upstream 64770 2763344 ~ 2763639 (+) True G70676
TU95326 lncRNA upstream 70575 2757143 ~ 2757834 (+) True G70660
TU95305 lncRNA upstream 123159 2658392 ~ 2705250 (+) True G70643
TU95393 lncRNA downstream 13332 2867436 ~ 2867850 (+) True G70706
TU95402 lncRNA downstream 14262 2868366 ~ 2868566 (+) True G70715
TU95407 lncRNA downstream 24345 2878449 ~ 2878654 (+) True G70720
TU95409 lncRNA downstream 30393 2884497 ~ 2884756 (+) True G70722
TU95404 lncRNA downstream 31049 2885153 ~ 2885559 (+) True G70717
XM_022671900.1 mRNA upstream 127275 2690738 ~ 2701134 (+) True gpx3
XM_007257743.3 mRNA upstream 730390 2088920 ~ 2098019 (+) True lrrtm2
XM_007239718.3 mRNA upstream 1855566 957420 ~ 972843 (+) True LOC103041625
XM_022671941.1 mRNA upstream 1915887 899894 ~ 912522 (+) True LOC103041930
XM_007239720.3 mRNA upstream 1951005 867909 ~ 877404 (+) True LOC103042240
XM_007257738.3 mRNA downstream 3791 2857895 ~ 2866216 (+) True LOC103021672
XM_022671955.1 mRNA downstream 17472 2871576 ~ 2946729 (+) False LOC103025421
XM_022671957.1 mRNA downstream 19089 2873193 ~ 2946729 (+) False LOC103025421
XM_022671958.1 mRNA downstream 32532 2886636 ~ 2946729 (+) True LOC103025421
XM_007257735.3 mRNA downstream 204420 3058524 ~ 3079832 (+) False LOC103047122
TU95246 other upstream 469180 2358883 ~ 2359229 (+) True G70604
TU95147 other upstream 1559005 1268767 ~ 1269404 (+) True G70522
TU94981 other upstream 1822571 1005483 ~ 1005838 (+) True G70385
TU94937 other upstream 1973251 845052 ~ 855158 (+) True LOC111193067
TU94933 other upstream 1988195 805956 ~ 840214 (+) True LOC103042548
TU95561 other downstream 523580 3377684 ~ 3378610 (+) True G70846
TU95569 other downstream 558347 3412451 ~ 3574758 (+) False LOC111193071
LOC111193076 other downstream 2102175 4956279 ~ 4957026 (+) True LOC111193076
TU96113 other downstream 2102194 4956298 ~ 4980011 (+) True G71247
TU96114 other downstream 2102194 4956298 ~ 4980011 (+) False G71247

Expression Profile