RNA id: XM_022671973.1


Basic Information

Item Value
RNA id XM_022671973.1
length 4418
RNA type mRNA
GC content 0.41
exon number 11
gene id LOC103043978
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 3420240 ~ 3439155 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agaaaACAGGCAgcgagagagataaagagaaagaaaaagagagatgaagagaaaaaaaacaaaaagaaagggAAAGGTGGAGCATGATGTAGGCATGATAACATATGtttgtcttgtgtgtgtgtgtgtgtgtgtttaggatgAGTTCCTCTGATGAAAAAGAGATGGACACAGAAAGGGGGAGACCAGTTCAGAGAACGATATCTGCCTCATCTGGATCCAGCAGTGTATCTTTTAAGAGTGATCAGTCAGAGGACAGACCATTTCAGAGAAAGAGATCTGCCACATCTgaatccagctgtgtgtctatgaaaAGTGATCAGGATGACTCTCCTGAGAACAGACCAGTTCAGAGATCTGCTTCATCTGAATCCAGCTGTGTATCTATGAAGAGTGATCAGTCAGTGGGCAGAATAATAACCTTCGGTGACAGACCAGTTCAGAAAAAGACATGTCCCTCTCCTGAATTCAGCTGTTTGTCCATGAAGAGTGACCAGTCAGTGTACAGATTAATAACTTTCAGTGACGACTCTACTGAAAACAGAGGAGTCCAGAGGGAGGGGTCAGAAATACCTGGGAGAAATATGGAGACCTcagtacagAACCTGGATTACCCATCATACCCTGGGGATGTGCCAGTGGGTGGTGACGACACATTGCATGCCTTTGGAGACAGGATGAAACAGGATGACCTCGCTACTACATCGCAAACCACACTGGCTCTTTCTTGCCATCAAAAACTCAAATTCACGCTGGGGGAAAAATGTCAGAAACTTACTGAAGGAATCCTAAAAACTGGATCTTTAGTACATTTGCATGAGATCTACACAGAGCTGTACATTGTAGAGGAAGGCAGTGACGAGGCCAATAAAGAACATGAAGTGAGCCAGATTGAAGCAGCATCCAGGAGACGAGATACACAGGAAATACCCATCAAATGCAATGACATcttaaaacacaaagacaagGTTATCAGAACTGTGCTGACtaaaggagttgctggaattggaaaaacagtctctgtgcagaagttcattctAGACTGGGCTGAGGGAACAGCTAATCAGGACGTGCTCTTCATCtttccacttccttttagaAAGCTGAATTTGATAAAAGAGGAAAAACTCAGTCTGGTGAATCTTCTACATCGTTTTTTTACGGACACAAAGAATTTAAAACCAGAGGAATTTCATCACAACAAAGTCCTGTTCAtctttgatggtctggatgagtgTAGACTTCCTCTAGATTTCCAGAACAGTGAGAGTGTATCTGATGTAACACAGTCAGCTTCAGTGGATGTGCTCCTGACAAACCTTATCAAGGGGAAGTTGCTTCCTTCCGCTCTTATATGGATAACAACTCGACCAGCAGCAGCTGATCAGATCCCTGCTGACTGTATTAACCAGGTAACGGAGATACGAGGGTTCAGTGACCTTCAGAAGGAAGAATACTTCAGGAAAAGGTTCAGGGAGGAGCATGTTGCAGAAAGAATCATCACCCACCTCAAGTCCTCAAGAAGTCTCTATATCATGTGCCACATCCCAGTCTTCTGTTGGATTACAGGCAGTGTTTTAGAGAGGATTCTGGGGGAATCTGAGATATCAGAGATCCCCAAGACTCTGACTGAAATGTTCACACAATTCATTGTGTTTCAGATCAAACACAGCAGGAAAAAGTACCAAGAAAAAGGAGATGTAGATCATGAGCAGGCTAGAGAGATTATCCTGGCTCTGGGAAAACTGGCTTTCCAACAGTTGGAAAAAGGCAACCTGATCTTCTATGAGGAAGACCTGATAAAATGTGGTATTGACGTCAGAGAGGCGTCTGTATACTCAGGTGTTTGCACCCAGATCTTTTGGGAAGAGTCTGTGCTACACTTGGGAAGGGTTTTCAGCTTTGTGCATCTGAGTGCTCAGGAGTTTTTGGCTGCCTTGTATGTCATTCTATCATTCATCTTCAAAAACAAGAATGTGTTGCAAAGGCAACACTTCCCCACAAAGTCAACACTGTCTGATGTCCTCAAGTGTGCCGTGGACAAGGCCTTGGAAAGTGAGACCGGACACCTGAACTTGTTCCTCCGCTTCCTTTCAGGCCTCTCGTTAGAATCCAATCAGACTATCTTACAAGGTCTCCTGTCCCAGAGAGTAAGCACCTCTCACAATACAGAGGAAATTATCAAATACATCAAGGATAAAACCTGTGAGACCACTCCAGAGAAAACAATAAATCTGTTCCACTGtttgaatgaactgaatgatcaCTCTCTGCAGCAGAAAGTCCAGTCATATGTAAACAAGGAAACTATTGGTGGTTCTTGTGATCCTAAGTTCTGTCCTGGGCAGTGGTCAGCTTTGGCATTCATAATGCTGAATTCTGAAAATCAGCTGGAAGAATTTGACTTGAGGAGGTATCACCAATCAGAGGAGTGTCTTCTAAGGTTGCTGCCAGTGATTCGAACATGCAGAAATGTTATACTGCGTAAGTGTAATCTGACAGGGAAAAGCTGTGCtgctctggcttcagctctCAGCTCAAACTCCTCATGTATAAGGGAGCTGGACCTGAGTTACAATAAGCtccaggattcaggagtgaagctcCTCTGTgatggactgaagagttcacagtgTAAACTAGAGAAACTGGGGCTGGAATGCTGCAGTCTTGGAAAGGAAGGCTGTACAGCTCTGACTGCAGCTCTGACATCAAACCCCACACACCTGCAAGAGCTCAATATAAAGCACAATAAACCAGGAAATTCTGGAGTTAAGCTGCTCCAAACTCTGGTGGAGGATCCACAATGTAAATTGGATAAATTACTGATAGATTAGGTTGTTAACATTGTGTTTCTTTAAACATACACTAAGCATTAAGCATAACTGTTGGGTAACAAagtacaaatattgtcaaatcTTAGAtcttgtctgtcttgtgttttttttttcctttttttttgctctttctgttttatgtcttttcctgtctgcttgtttttttcagccatgTGCTCTTTAGCTTTAGTTTCTATCTTGTTTCTTCCCTTGGCTCTGCCCTAGTCATTAGTGTTTCCACCTGTCTTGTCACCTGTTACCCCACATCCTCGTTAATAGCCCCAGTTGTTTCCAGTCACTCAGTGTgtatattacataatattacattacatttggaagACGATGTTGTGCAAAGCCACTTACAATGATTTACATAATGATGTACATAGAGTAATGAAAGTTCAagataaaaaacatgtttagacagggcctaaaggaggccaaattgaaatagtgggatagaagAGTAAAGGAGGGGGAGCAGGAAATAAAGTTAGAAGTAGTTTTGTAAAGTAGGTTTGTAGGTTAATATGtcagaggtgttaggagagtaagtgctctttgaagagctcagtcttcaggagtttcttaaagatagtgagagattctcctgatctggtagtagaagCTTCGGCCCTGACTTTGGGACCACTAGCCGAAGCTGATCGTCAGATCTTAGGGACTGAACGAGAACATAAGGCATGAACATTTTGCATCAACTATAACTTAGTAACCAATGTGTAAATAGCACCAATGTACAGTGAGTTACAATAATAGATCCTTGTGGAAATAAATGCATGACTTAACATCTTTATCTCAAAgtcagagaaagacaaaaaagcttagcttagctttggaTAGCTGTGGATAGCTGAGGTCTGAGTAAAGGTTTACCAATGGCGTAGGTTTCATTGGTGATTACATGGCCAAGGTCTCTCCAGGCCAAATAAGATAATTTCTGTCTTGGCCTCGTTaagatttaaaaagtttaaagccGTCTGTGCCTTTTATTTCCTCGAGGCAGCTCAGTAGATTGCCCACCATCTAAGCCATCTGTCGACTAATTGCCATTGTTTGCATTGGTGTCTTGAAATATAAATCTGCACTGCTACAGCCTGAAAATTAGCATGCCAGTGATCAAAATTGGTATGCTAGAGATTTTGAGAGACAGTTTTAGTGCTCTTAATATACATACCTATTTACTGTATGCCagcattacatttttcatgttttatgtgTATGATATTAACAGTCATATAATTGCATGATGTATTTGTAATTACATCCTGGGCTTTCATATAATGTACATTTTCTTGTAAAATTGACTTATTAGTTCAGTAATTTTACAttgattctgtttttttcaacattgactcaatgttatgttatttttatgtatttgcaTTAAACTTTAATTTGTCTATGTCAACGGATTTTGGTCCAAGTGATTTTGGAGCGTTtcttggtccattcatcatgaatgTTTGACACCATGTACAAGGCatttaaactttttacatttgtttttgttgcaACCTTTTGCTGAATAaaaagagtggcataaagttatccaaaagcagt

Function

GO: NA

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95570 lncRNA upstream 5562 3414503 ~ 3414915 (+) False LOC111193071
TU95530 lncRNA upstream 97509 3293459 ~ 3322968 (+) True G70820
TU95531 lncRNA upstream 114456 3305533 ~ 3306021 (+) True G70821
TU95522 lncRNA upstream 128002 3230072 ~ 3292475 (+) False LOC103024487
TU95587 lncRNA downstream 20800 3459955 ~ 3460502 (+) True G70859
TU95589 lncRNA downstream 21543 3460698 ~ 3478336 (+) True G70860
TU95612 lncRNA downstream 116361 3555516 ~ 3556070 (+) True G70880
TU95616 lncRNA downstream 158929 3598084 ~ 3599084 (+) True G70883
TU95630 lncRNA downstream 240847 3680002 ~ 3682460 (+) True G70892
XM_022671972.1 mRNA upstream 6123 3409670 ~ 3414354 (+) True LOC111193071
XM_007257729.2 mRNA upstream 66882 3347768 ~ 3353595 (+) True ndufb9
XM_022671963.1 mRNA upstream 132376 3121920 ~ 3288101 (+) True LOC103024487
XM_022671979.1 mRNA downstream 484817 3923972 ~ 3935104 (+) True LOC103032643
XM_022671980.1 mRNA downstream 515853 3955008 ~ 4105963 (+) True LOC103042852
XM_022671982.1 mRNA downstream 692867 4132022 ~ 4215716 (+) True LOC103045063
XM_022671983.1 mRNA downstream 725899 4165054 ~ 4215716 (+) False LOC103045063
XM_022671984.1 mRNA downstream 867510 4306665 ~ 4339082 (+) True dpy19l4
TU95561 other upstream 41867 3377684 ~ 3378610 (+) True G70846
TU95246 other upstream 1061248 2358883 ~ 2359229 (+) True G70604
TU95147 other upstream 2151073 1268767 ~ 1269404 (+) True G70522
TU94981 other upstream 2414639 1005483 ~ 1005838 (+) True G70385
TU94937 other upstream 2565319 845052 ~ 855158 (+) True LOC111193067
LOC111193076 other downstream 1517124 4956279 ~ 4957026 (+) True LOC111193076
TU96113 other downstream 1517143 4956298 ~ 4980011 (+) True G71247
TU96114 other downstream 1517143 4956298 ~ 4980011 (+) False G71247
TU96122 other downstream 1524547 4963702 ~ 4967907 (+) True G71249
LOC111193046 other downstream 1540312 4979467 ~ 4980022 (+) True LOC111193046

Expression Profile