RNA id: XM_022671975.1


Basic Information

Item Value
RNA id XM_022671975.1
length 5442
RNA type mRNA
GC content 0.50
exon number 39
gene id LOC103024174
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 3461237 ~ 3508996 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTCACTATGAGCACATTCCAAGTGAACCCTCCGCTTCTACACGCTAAAACcgctgtgttgttgtttttatcttatttattacattttttgagtCTTAATTTGTGGGTTTTGTTTAATTTCGAGCTTGGTGGAGAGGATGAAGAGGTAAATGAGGAATGCAGGAGTTTCTGCTGATAGTGAACAGCAGTCCAGCAGTACTAATCTCACCTGAGATTGGAGGAGAAAGGGTCTAAACTCTTCTGGTGGACTTTCTGCACACTTTTCTTCTATATCTCAGTAATTCTGACTGGAAGAGGCTTTAAACCGCTGAGCTGAGGAGTTCTGGTGAAGATGGCTGGAGAGGAAGACCCCTGGAAAGAAGTGCTCGACAGTGTGCAGGATGCCGTGGGCCGGCAGGTAAAACTGACCCTGAAGAAGAAGGTGCAGCTGGAGGTCAAAAGTGAGAAACTGGAGAGCAGAATCCTGgCTCTCGCTGCACACCGGGCCTATTTGCTGTCTGCTCGAGCGCCCGCCAGGATAGAACAGACCTTCAATTTCTTCGATATTCAGTCCGTCAGCAGCAACAAGTCTAATCAGtTGGTTCTGGAGTATGATAAAGGACAGCTGTCGGTGAAGCTCAGCTCTAATGAGGAGGTTGATGAAGTCATCGCTCAGATTGGGAGCAGCATACAGGAGCACTGTCCAGGACTGAACCCagtgagagtGATTAAGAAGTTGTCATTAAAGCCAGCAGAGAGGGTGACCAGTCTGCCACTGTGGGAGAATAACACTCCTGCCGACACTGGACCCTGCGgtgcATTCTCTCGTATGTATTGGTGTTTATGTGATCAGCAGGGGTTTCcctacagagaggaggtgcagtggGATGTGGACACTATTTACCTCACCCAAGACACACGAGAGCTGAACCTGCAGGATTTTATTCACCtggagaacagGGATCTGATGGGCATTGTGGCTGTGCTGGAGTACAACCAGTGGTTCACCAGACTCTCCCTGAAGGACTACAAACTGtccACAGATTTGTGTGATCAGATCCTGAGAGTAGTGGCTCGTTCTAGCAGGCTAGAGGAGCTGGTTCTGGAAAACACAGGACTCAAAGCtgattttgCACAGAAGTTGTCCAGTGCTCTGAGCCAGAACCCACACTCTgctctacacacactcatccTCACCAACAACTCTTTGGAGGACAAAGgcaTCGCATCTCTGAGCTCTTCACTGGGAAAACTTTCATCTGGCCTGAAACATCTAAACCTCTCCAAAAACTCCCTCTCAACTAAAGgtgTGAATATTCTGGCTCAGGCTCTCTGTTCCAACCCCTCCATCttcaacacactaacacaccttGATCTGTCTGGGAACTCACTGAGGGGGGACGACCTGCCtaaTCTGTGGAATTTCCTGGGTCAGCCGAACAGCCTGCAGACTCTGGACCTGTCCAGCTGTGACTGCTCCCTGGACCTGgtgtGCTCCTCTTTATTGCGAGGTTCTCTGAAGCACCTTTCAGTTTTAAACATGTCCAAGAGTGTCTTCAATCTCAAGAGAGGAAAGGAGTTGCCGTCTTCCTTCAAGCAGTTCTTTAACAATGCTCAGGCCctcaacaccatcatcctctCTTGTACCAAGCTCCCTCTGGAGGCCCTCAAagccCTGTTGCTGGGTCTGGCCAGCAACCCCAACCTGAAGGACATCTCTTTAGATCTGAGCAGCTGTGAGctgcGATCAGCTGGATCTCAGATTCTGGAGGGCTGTATAGCTGAAATACCAAACATCTCCAGCCTGGACATATCAGACAACGGTCTGGACTCTGATCTGACCACTCTGCTGGTGTGGCTGGCTAAAAACCGCTCCATCAGAAATCTGTCTCTGGGCAAGAACTTCAGCAACATCAAATCCAAGAATCTGGGTCAGGTTCTGAGCAGTCTGGTGCTGATGATCCAGGAAGAGGAGTCTccgcTGAGCTCTCTCTCGCTGGCCGACTCGAAGCTGAAGGCGGATCTGTCCATAGTGCTGAACGCTGTGGGGGGAAACAGCTCTCTGACTCGCCTGGACATCAGTGGAAACAGCATGGGGGACATGGGGGCCAAGATGCTGGCTAAAGCTCTTCAGATCAACACTAAACTAAGgACTGTGATTTGGGACAGGAATAATGTCAGTGCACAGGGGCTACAGGATGTTGCAGCTGCTTTGGAGAAGAATTACACCATTCGCTTTATGCCAATGCCGATCATGGATGCTGCTCTGGCTCTCAAATCCAGTCCGGAGAAAACTGAGGACGCCCTCATGAAGATGGAGCAGTATCTGCTGAGGAACCATGAGACGAGGAAATACCTGCAAGAACAGGCCTACAGACTGCAGCAGGGCATCGTTACCTCCACCACACAGCAGatgatTGACAGGTTGTGTGTGAAGGTGCAGGACCATCTGAACTCACTTCGcttcagtgagagagagattgtacAGGAGGACATGAAGGCAGCTGAGAAACTCGTACAGGACGCCCGTAACTCAAAAAGACTGCTGGCCAACATGTACCACCTGCGCTCGTTGGGGCGTGGAGGAGGTGTGTCTGAGGGCGGGGAGAGTCCGTGGGCGGGGCCTATCCAGGAGGAACTGCAGTCGATGGTGGGAGAGATCAGCACGGTCATAGACCAGCAGCTCCAGagtttattagtGTCCATGGTGGACACTGCAGAGAGTGTGTGTCCTCACGTGATGCGTAAAGCCAACCTGAGGCCGGCTTTGATGCGGGCGAGCGAGGGGAAGATGAGCGTACCCCAGTCCTTCATTACCGACACTTTACTCAAGCAGTCTGCTGTCGACATCATCAACAAGATCAgtgAAGTAAAGCTCAGCTTGGCCTCGTTCCTCTCTGATCGCATCATTGACGAGATTTTAGcgtccctctctcgctctcaacAAAGACTGGCGGAGCACCTGAGTAGGCGTGGCCAGCCACTATTGCATCATGATTCAGAGGAGACTGAGGTTGTGGACGAGACAAACCTGCTGCCAGAGAACCTTCCAGCACCTCCAGATGACCTGCtgCTGACTCCCACGTCCAAGAGGAAGAGTATTCTCTTCAGAATGGTGCGGCCAGTCTCTGTGGCCTTCGAACTGGAGTTTGATCTGGATAAAGCTCTGGAGCACGTTcccatccacctggaggaccTGCCCCTCCCTCTCCCCCCTACCCCGGTGGAGGCAGAGCTAGTGAGGCAGAGGAGTGTGGGTCTCAGTGACCTGCCAGAAACAGAGAGTCCAAAACTACAGCACATCACCAAGCAGAGACCCCGCAGGAAGAAGACCGCCAAAACCAGAAAACCACCTGCTCTCAGACGTGCTGCTCCTGTTGAAGAGGTGGAGCTGGAGAGCTTAGTGGGGAAAGTGGATGAGGGTGTGGACGAATTCTTCTCCAAAAAAGTCACAAAGATTGGAGCCAAgcgtTCCTCTGTGAGAGACTCAGTGGTGGAGggggagaggaagagggagtCTCGTATGAGCGGCTTCTTCAACCTCATCAAGTCTCGGACCTCCACCAAAACCCCACCCACCAGCCCTCATACTCCCTCCACTGCACCAGCCAGCGTAACACCGACCACCACCACTCCCATAGTGACAACCGCCAACCCACcaataacagcagcagcatctgTAGAGGAGTCCGATGAAACAGATTCCACTAAAACTGCAGTCAAAAGTCCACTTCCTGATCCCCCTgctgagccaatcagctctcagcCTGTGGAGAAGGCTGGACCATGTGACCATGGAGAAGTAGCAGCAGCCCCTGAGCCTAAAGCTCAAGCAGAGGAGGGTAAGAAGAAGGAAGGAGCGCCCGCTGGCAGAATACGAGGGGTACAGGTGATGGGTAATGACTTCCTTGCTCAGCTCCGAGCCAAACAGGAGAAGTTGAAGGAGAAGGCACCTGAATCCTCCGTTCCTACAGTCAAACTTCAGACTGAGCATGGTGAGGGAGGCAGCAGCACTGTAGAGAAGCTTCTTCACAAAGAGCCCCACCCAGAACCTGCCTTTAGATCCCACTCTCCACTGTCTCAACCAAAACATGCTGGACCTCCGCATGCTCCTATACCTGCCCACGTACCTGCAACCAAGCTTACACCTGCCACCTCCACCCAGGCTGCCACTAAATTCACACTCACCCCCCACCCCAACAGCTCCAAACCTGCCCAGAACCCCCAGCCTTCTCCACCACCAAGCCTAGAAAGACTCCCGAGCCTGGAGCCTCAACCCAGCTCTCAGGTTCCTTCACCACCCATGAACAAGACTCCAAGCCTGGCGCCTCTACCCAGCCCTCGGGTTCCTCCACCACCAGTGACCAGTCCtccaagcagcagcagcagctccagcatTTCTGCAGATGACGTTGTCTCAGGCCGCCCCAGTGCCGGCTCTTCCCCCATGCTGCCTGTACCTGCTCCACGTGTCAAGAGTGCACCATCTGACACAGAGACCGAGGAGCAATCACCAGTTTATCACAGCTCAGACAGGATCCCACCACATATCATGTTGGATCCTGCAGTAGAGGACAGTGTGTTTGAGTCagaactcaacacacacacatcacacactccaGAAACCGGACAACACTCATCACCACGTCACTCCTCAACCCATCCTGCTGAAAAAGAGGATCACCAGCACTCCACGTCCCTCCCCTCACCTGTGGACCTGATGAGTCCCACAGACTTTCCATCAGCTCCAAGTCTCAGCACCACAGATTCAGACAGTGAGCACCAGCCAGATGATCAACATACTGAGATACCTGATGAGGACGAAACATCAGAATAAACACAGACCTCTGGACAAACTCTGGATAATCACCATCTTTCTGATCTGTGAGATGCTTCAGATTAAACCCTGACTCCCCCATGCTTTAAAGTTCCTACCAAAGACATCACGACTGCCTCTGACTCACATTTACTGATAACCACCTGGATCTTCAGCCACCTGTGATCATAAACCACCCTCTGACTGTGCTCCCATGTGACTGTAATGGACATAATGTCAATCGATGTTAAAAGTCTAATCACCTTTTCACCAAATAACTAATTAAATGATCAATCTTCGGACcatttatatattctatattttctttaattatctttattatattcAGTTATTTGAATAattgatgcatttttttatgtaatagaGTATTATTCCTGTTTTTCATATATGTAGGTGTGGTGTTGGTGGGTTTTAACCTTAAATAATAGCTGTAAAATGTCTCTATTTTAATGGGAATATAttgatgtgtttatatattgCTTTTATGTGGATGATTTAGGGCCAATGATGCCCATTGATCATATGGGGAAATATTGTCTTTATATTTGTTGTCAATATTGTCAATTGTTAAtgcatttgtacatttttactggcaaaaaaatatacatatatatttttactctgAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95705 lncRNA downstream 2439 3457819 ~ 3458798 (-) False LOC111193045
TU95701 lncRNA downstream 6013 3454877 ~ 3455224 (-) True G70947
TU95699 lncRNA downstream 9625 3450905 ~ 3451612 (-) True G70946
TU95685 lncRNA downstream 46198 3414588 ~ 3415039 (-) True G70938
TU95669 lncRNA downstream 107638 3280156 ~ 3353599 (-) False G70924
TU95712 lncRNA upstream 6042 3515038 ~ 3584641 (-) True G70955
TU95723 lncRNA upstream 66565 3575561 ~ 3703751 (-) False LOC103023864
TU95724 lncRNA upstream 89088 3598084 ~ 3599084 (-) True G70965
TU95721 lncRNA upstream 125284 3634280 ~ 3641649 (-) False LOC103023864
TU95739 lncRNA upstream 181319 3690315 ~ 3711137 (-) True G70979
XM_022671902.1 mRNA downstream 2427 3444095 ~ 3458810 (-) True LOC111193045
XM_022671968.1 mRNA downstream 53806 3362571 ~ 3407431 (-) True mtss1
XM_022671970.1 mRNA downstream 53810 3362571 ~ 3407427 (-) False mtss1
XM_022671969.1 mRNA downstream 53817 3362571 ~ 3407420 (-) False mtss1
XM_022671971.1 mRNA downstream 53817 3362571 ~ 3407420 (-) False mtss1
XM_022671976.1 mRNA upstream 124720 3633716 ~ 3641881 (-) True LOC103023864
XM_022671903.1 mRNA upstream 227630 3736626 ~ 3848624 (-) True LOC103042226
XM_022671978.1 mRNA upstream 353122 3862118 ~ 3910529 (-) False LOC103042532
XM_022671977.1 mRNA upstream 353122 3862118 ~ 3910529 (-) True LOC103042532
XM_007236447.3 mRNA upstream 938176 4447172 ~ 4462972 (-) True LOC103026470
TU95670 other downstream 107638 3347800 ~ 3353599 (-) True G70924
TU95334 other downstream 716165 2735868 ~ 2745072 (-) False tnip1
TU95798 other upstream 260165 3769161 ~ 3807099 (-) False LOC103042226
TU96020 other upstream 902952 4411948 ~ 4413011 (-) True G71175
TU96095 other upstream 1373174 4882170 ~ 4884488 (-) True G71235
trnaw-cca_42 other upstream 1415004 4924000 ~ 4924071 (-) True trnaw-cca_42
TU96400 other upstream 1962670 5471666 ~ 5476375 (-) True G71458

Expression Profile