RNA id: XM_022671977.1


Basic Information

Item Value
RNA id XM_022671977.1
length 2900
RNA type mRNA
GC content 0.49
exon number 25
gene id LOC103042532
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 3862118 ~ 3910529 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tctctttctctgtgtgcgcgtgtttgtgtgtgtgtgactcgcGGTGGTCGGCGGAAAGGCTCGTGCACAGCTCGTGCgctgaaacatctggaataagAGATTAATCATGCTGCTGGAAACTCTGGTAGTTTGTGTGTTCTCCTTCCTGCTCGGCCCCCGCGTTTGTGTTGGCTACATATTTCAGGCCGTTCAGCTTGGAGAAAAGGAAGAGCTGATCCCCACCACTAAACTAACTGAATGGGTGAGCTCAGCCGGCTCATGTAAGGGACGATGCTTTGAGCTGGTTGAGGCGGAGCCTCCGGGGTGCAGATGTGATAACCTGTGTAAGACCTACTACAGCTGCTGCAATGATTTCGATGAGCAGTGCCTCAAAACTGctggagGTTTTGAATGCAGTGAGGACCGGTGTGGTGAGAACAGAAATGAGGACTATGCGTGTCAGTGTTCAGAAGATTGTCTGGAGAAGGGAGACTGCTGCACAAACTATAAATCACTCTGCAAAGGTGAGAGTCGATGGGTGGAAGGAGAATGTGAGGAGATTCATTCTCCAGAATGTCCAGCAGGTTTTCTGCGTCCTCCTCTGATCATGGTGTCTTTGGACGGATTTCGAGCTTCTTACATGAAGAAAGGGAAATCTGTTCATCCCAACCTGCACAAACTCAGGACATGTGGTACCCACGCCCCTCATATGAGACCAGTGTACCCTTCTAAAACTTTCCCCAACCTCTACACACTGGCTACAGGCCTGTATCCAGAGTCTCATGGTATTGTGGGGAACACAATGCATGACCCGGTGTTTAATGCAAACTTTAACTTGCGTGGGAGAGAGAAACTCAACCATCGCTGGTGGGGAGGACAGCCTATCTGGATTACATCAGAGAAACAGGGCGTGAAGGCAGGGACCTTCTTTTGGCCTTGggtGATTCCACTGGAGAGGAGGATCCTCACCATACTGAGATGGCTCCACTTGCCCGATGAGGAAAGGCCGTATGTGTATGCAGTGCACTCAGAGCAGCCTGACACTTTTGGACACAGACTTGGACCCCTCAGTAACGAGTTGGATAACCCCCTGAAGGAAATCGATAACATTATTGGTCAGCTGATGAACGGACTGAAACAGATGAATCTGCATCGCTGTGTGAATGTAATCATTGTGGGGGATCATGGAATGGAGGAGGCCCACTGTGACCGGAAAGAATATCTGAGCTCATATGGACTAAACACTGAGGATTTCACACTCATCCAGGGATCCTCTGGAAGGTTGCGTCCCAAGAACCGTAGCGCACAATATGACCCAAAAGAAATAGTAGCTAACTTAACATGTAAAATGCCTAATCAGCACTTCAAAGCGTATCTGAAGCAGCACCTGCCCAAGCGTCTCCACTACGCTAACAACCGCAGGATAGAAGACATCCACCTGCTCATGGAGAGGAAGTGGCTGGTTGCAATGGCTCCTCCTGAAAACCGAATTCCCGGTAGCTGTCGGTACTTTGGGGATCACGGCTTTGATAACAAAATAAGCAGCATGCGGacAATCTTTATGGGACACGGACCAAGCTTTAACTTCAGAACAGAAGTTCCTCCGTTTGAGAATATTGAGCTTTACAACATAATGTGCGatcTTCTGGGCTTGACTCCGGTCCCTAATAACGGAACTCACGGAAGTCTGAATGCCATGCTGAGAAACCCTCCGTTTACACCTGTACAGCCAGAGGAAGTGACGTCTCCTGAACATATAGATTCTGCTTCCACCTCCACTGCCATCTACAATCTGGGCTGCAGCTGTGATGATGAGaATAAAATTGAGGAAAGTACTCAGGAATTTTCTTCAGAAGGTTCAGGGCTGCCATTAAACAATGCTACCCACCTGCCTTTTGGACGTCCAGCTGTTCTTTTCCAGTCGCAGTACACCTTACTGCAGCACAGCGACTACATCAGCGGCTACAGCTACGAGCTCCACATGCCCCTGTGGACAACGTACACCATGACAGCACAGGCAAACACCAGTGTGGACAGCACTGCTCTCCCGCTGTCTGGCtcagagtgtgtgagagcagacATCCGCGTCGctcctgaacacacacagtCCTGCCAGTCCAGCAGCCAGAATCCTGAGATCATCCGTGGATTTCTTTATCCCCCCGactcctcctcctcttctgaATCCAGATATGAGGCGTCTCTGATCACAAACACAGTGCCCATGTATCGAGCCTTTAAGAggatTTGGAGCTACGTGCAGGAGGTAGTGTTGAAGCGCTACACTGAAGAAAATAATAGCATTAATGTCATCACTGGACCCATATTCGACAACGATTATGATGGGCTAAGAGACACGCTGGAGAAGATAAGAGAGCATGCGGGGGAGGCTGTACCGGTTCCTACTCATTACTATGTGATAATAACACACTGTGAGGGAGAGAATACCACAGTGGAGGAATGCGAGGGGTCTCTGCGAGTGGTCTCCTTCATCCTGCCACACCGCACAGACAACTCAGAGAGCTGCAGCAATTCGGACGAGACGTCCGGCTGGGTTGATGAGATTCTCCGGTTACACACGGCTCGAGTGCGTGACGTGGAGCTTCTGACCGGACTGGACTTCTTCCGCTCAACACCCATGCCCTACACACAGACCCTCACGCTCAAAACCTACATGCACACTTTTGAGGAAGATGTCTAACCTCACAGAGACACAGCAAGAATGGAAACAtggcatcatcatcatcaacatcatctcTCTTTCAACCTCAgtgttctctccctctctcctgtcTCCTTCTACCTGGGTCACATGTCGCTTAggtgtatatttttatacagcATATTTATTGTTCACTTTAAGCAAAATAATAGCAATGATCAGATTTAACACAACTGAACATAAACAGGCTTtccatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95819 lncRNA downstream 50152 3810265 ~ 3811966 (-) False LOC103042226
TU95818 lncRNA downstream 51044 3810265 ~ 3811074 (-) False LOC103042226
TU95739 lncRNA downstream 150981 3690315 ~ 3711137 (-) True G70979
TU95721 lncRNA downstream 220469 3634280 ~ 3641649 (-) False LOC103023864
TU95724 lncRNA downstream 263034 3598084 ~ 3599084 (-) True G70965
TU95864 lncRNA upstream 189701 4100230 ~ 4108878 (-) True G71067
TU95867 lncRNA upstream 196092 4106621 ~ 4108878 (-) False G71067
TU95868 lncRNA upstream 196092 4106621 ~ 4112464 (-) False G71067
TU95886 lncRNA upstream 256857 4167386 ~ 4216646 (-) True G71081
TU95991 lncRNA upstream 396172 4306701 ~ 4310021 (-) True G71153
XM_022671903.1 mRNA downstream 13494 3736626 ~ 3848624 (-) True LOC103042226
XM_022671976.1 mRNA downstream 220237 3633716 ~ 3641881 (-) True LOC103023864
XM_022671975.1 mRNA downstream 353122 3461237 ~ 3508996 (-) True LOC103024174
XM_022671902.1 mRNA downstream 403308 3444095 ~ 3458810 (-) True LOC111193045
XM_007257727.3 mRNA downstream 454708 3362571 ~ 3407410 (-) False mtss1
XM_007236447.3 mRNA upstream 536643 4447172 ~ 4462972 (-) True LOC103026470
XM_022671989.1 mRNA upstream 1047576 4958105 ~ 5013867 (-) True LOC103041488
XM_022671988.1 mRNA upstream 1051060 4961589 ~ 4975625 (-) True LOC111193075
XM_022671987.1 mRNA upstream 1051060 4961589 ~ 4967939 (-) False LOC111193075
XM_022671990.1 mRNA upstream 1092813 5003342 ~ 5013867 (-) False LOC103041488
TU95798 other downstream 55019 3769161 ~ 3807099 (-) False LOC103042226
TU95670 other downstream 508519 3347800 ~ 3353599 (-) True G70924
TU95334 other downstream 1117046 2735868 ~ 2745072 (-) False tnip1
TU96020 other upstream 501419 4411948 ~ 4413011 (-) True G71175
TU96095 other upstream 971641 4882170 ~ 4884488 (-) True G71235
trnaw-cca_42 other upstream 1013471 4924000 ~ 4924071 (-) True trnaw-cca_42
TU96400 other upstream 1561137 5471666 ~ 5476375 (-) True G71458
TU96529 other upstream 1919092 5829621 ~ 5841687 (-) True LOC103035656

Expression Profile