RNA id: XM_022671979.1


Basic Information

Item Value
RNA id XM_022671979.1
length 1044
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC103032643
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 3923972 ~ 3935104 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acacacacacacacacacacacccatacacctGACACAGATCTACCCATACACAACCTTCAGACATCTCCGAAACACCACATTTGTGATTTGATGTAACTGGACTGACAGCACAATGGGACCCCGCACGGCAGCTGGGCCATCCAAACAGGAGAAGCTGGTGTCTGGGGGACGTCACGGTAGCAAAAGTGACAGTGACCAAGACGATTCTCCTGTGCTTAATAACCCAAaatcagTGGTGAAAAAACAGGTGAGTCCCGAGGAGCTTCAGAAACCTGGAGGGAAGTACATGAAGAGGATGTTCACGatTGTGGGCGATGCCGTCGGCTGGGGGTTTGTCGTGAGAGGGTCTAGTCCATGTCATATTCAAGCTGTTGATCCCAGCGGACCTGCAGCTGCTGTTGGAATGAAGGTGTGTCAGTTCATAGTGTCTGTAAACGGAGTGAACGTGTTGGAGATGGACTATCGGACAGTCAGTCACCTCATCCTCACCGGTCCTCGCACTGTAGTGATGGAGGTGATGGAGCCCGTCGACTGCTGATGATACCGCTGAAGGAGTGACTCTGAAGACCACTGTAAGCTATTCTGATTAAAGGGTTCTAGACTGAACTTCCGCATTCACATCCCGTAAGTCCAGGTGATGCGCTAGGATCATCTAGACTTACTGGAGGATACTGTCTGCAGGATTTGCTCAGCAGGTCTGATACAGAAAGTTCTGGACGTGCAGACCAGTGTCGGAATCGCTCACCGTAACAATCATAATTAGCAGAAAGGGCAGAACTCAATATgcgcagcagcagctgcagctgtAGCCCAGAATCACAATGATACCAGTCATACTTTTTACAGAGAGACTGTGAGCATCTGTAATTAGATTAGAAAGTTTCAAAAATAATGCTCTTATTTGAGGAGCAGGGGTGCAAAAAAAAGTACAAGTACAAAGAAGCTACTTCACAATATGGGGCATGTATATTCTAAATGGGGTGTGGTTCAAAACTGAAAACATTAATGGaggcaataaatacaaaaaatacgtTTCATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95788 lncRNA upstream 35077 3884338 ~ 3888895 (+) True G71019
TU95771 lncRNA upstream 79178 3842694 ~ 3844794 (+) True G71005
TU95747 lncRNA upstream 155250 3733622 ~ 3768722 (+) True G70986
TU95761 lncRNA upstream 157197 3766437 ~ 3766775 (+) True G70997
TU95758 lncRNA upstream 174365 3748840 ~ 3749607 (+) True G70995
XR_002650229.1 lncRNA downstream 21340 3956444 ~ 3957741 (+) False LOC111193074
XR_002650226.1 lncRNA downstream 21340 3956444 ~ 3957741 (+) False LOC111193074
XR_002650228.1 lncRNA downstream 21340 3956444 ~ 3957741 (+) False LOC111193074
XR_002650230.1 lncRNA downstream 21340 3956444 ~ 3957741 (+) False LOC111193074
XR_002650232.1 lncRNA downstream 21340 3956444 ~ 3957741 (+) False LOC111193074
XM_022671974.1 mRNA upstream 484817 3420240 ~ 3439155 (+) False LOC103043978
XM_022671973.1 mRNA upstream 484817 3420477 ~ 3439155 (+) True LOC103043978
XM_022671972.1 mRNA upstream 509618 3409670 ~ 3414354 (+) True LOC111193071
XM_007257729.2 mRNA upstream 570377 3347768 ~ 3353595 (+) True ndufb9
XM_022671963.1 mRNA upstream 635871 3121920 ~ 3288101 (+) True LOC103024487
XM_022671980.1 mRNA downstream 19904 3955008 ~ 4105963 (+) True LOC103042852
XM_022671982.1 mRNA downstream 196918 4132022 ~ 4215716 (+) True LOC103045063
XM_022671983.1 mRNA downstream 229950 4165054 ~ 4215716 (+) False LOC103045063
XM_022671984.1 mRNA downstream 371561 4306665 ~ 4339082 (+) True dpy19l4
XM_022671985.1 mRNA downstream 374490 4309594 ~ 4339082 (+) False dpy19l4
TU95569 other upstream 349214 3412451 ~ 3574758 (+) False LOC111193071
TU95561 other upstream 545362 3377684 ~ 3378610 (+) True G70846
TU95246 other upstream 1564743 2358883 ~ 2359229 (+) True G70604
TU95147 other upstream 2654568 1268767 ~ 1269404 (+) True G70522
TU94981 other upstream 2918134 1005483 ~ 1005838 (+) True G70385
LOC111193076 other downstream 1021175 4956279 ~ 4957026 (+) True LOC111193076
TU96113 other downstream 1021194 4956298 ~ 4980011 (+) True G71247
TU96114 other downstream 1021194 4956298 ~ 4980011 (+) False G71247
TU96122 other downstream 1028598 4963702 ~ 4967907 (+) True G71249
LOC111193046 other downstream 1044363 4979467 ~ 4980022 (+) True LOC111193046

Expression Profile