RNA id: XM_022671982.1


Basic Information

Item Value
RNA id XM_022671982.1
length 3595
RNA type mRNA
GC content 0.53
exon number 3
gene id LOC103045063
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 4132022 ~ 4215716 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTcgtcctgctgctgctccttttAATGCAttgaatgaaaatatttttggtgTCGTATGAAAATATATGCTGACGTACCAGATCATGTGGGCTTTTTCGTCGCACAGCcacttgcttttttattttttcctccacTACGCTCGTCTTTAGGATCCGCCAGAAATCTTTAGGATTacaaattgtgctttatgggGCGCCGCTGCCGCTCCTGCTGCCGCCCGTTCCTGAAACAGCAGCGGGGTTTTTTGGAGGGGAACGAGGCTCGTTAGCGCTGTTATCGGGGCTTAATCGTAATCTCGAGCTTTCCTGGAGAGAGACGGAGTGGGTTTTTATGATCAGGGGAGTTGTGTGATGAGGTCTTATGAAGCCCTGCACTGGAGCTGATGTTCCCGGTCAACGGGAGTCTCCGGAGCGAAGGCTGGGAGACTCCGGAGCGGACTGAGGAACCGCAGAGTCCCGCTCTCGTGCCGGGAATCCACTCTGATCACCTCCattcctctctccctccctccctttgCAACCCCTCCCAACGACCCTACCAGGCTTACCCCTGAACCCTGTCACTGCGATTACCATGTCCAGCCGAAGAAAGTCCTTCACTCCCTGCATGGTCTGCGTCAGCGATGCACCAACGGATAGCCCTGTGGAAATGGATATCTTGTCCAGCGAAGCAGTAGAGGACAGGTCTTCTTCTCTGCAGCCTTCATTAGATCTGCATCAAGTGTCAGCTGAGCACGAGGAGCTGAGTCATGTGGAAGCGACAGAAGGAAAGATAGAAAGCGAGAAGTCTCTTTCCCCAGAGAAACAGCAAGCAAGGGACTACCAGTGTAAGTACTGCCCTTTCTCCACTCAGAATCTCAACGACTTCAAAGAGCATGTGTACTCTGCACACCCTAACGTCATTCTGAACCCACTGTACCTGTGTGCCGTCTGCAACTTCAGCACCAAGAAGTTTGATTCCCTCACGGTACACAATGAATCGGAGCATCCAGGCGAAAGCAATTTCAAGTTCAAGCGAATTAAACTCGACAACCAGACCATCCTAGAGCAAACCATAGAAAACAAGCAAGATTCAGGCTCTGCTGACACTAAGATGCAAGACGACGATGACGACGACGATGACTTTTTACCCTCCTGCCTTTCAATCACAGAAAATGTTGCAAagcctgaaatatttaacatcCAAAATGAGGTCGAGAGCAATTTAGACAATCTCATATTTAAGGATCAGATCACTGCTGTCAGCGTTAATGGCACAATCATCATCCCTGAGCCCATGATCCTGCAGGGGCTCTCCCATGTCATGCCTCTGCTACAGCGCCCACCCAACCTTAAATCCATTCCAACCATTGCCGTTCCTCTGAACGCGAGCAAGTACAATCCCTTGTTGGACAGCAACCCCACCCTCATCACGTCCTTCAACAAATTCCCCTATCCAACTCACGCCGAGCTCTCGTGGCTCACTGCTGCATCCAAGCACCCAGAGGAGCAAATCAAGGTGTGGTTCACCACGCAGCGACTGAAGCAGGGAATCACCTGGTCACcagaggaggtggaggaagCTCGAAAGAAAATGTTCAACGGCTGCATGCCGCCTGCTGACCAGACGTTCACCGTTTTGCCTACGCCCGTGAGCGAGCCAATCGCCACCAACCACTCTGTCGCACCAGCAGTCTCCTGCCATGTCTTTGGGCAGTCCACTGCGAATGGATCCCCTGCTACATGTGCAACTGTCACTGTGACTACAGTCAGTAGTATGCATAATCTGAAGCGCTCACTCGGAACTCCGTCGGTGGTCCAGGAAGTTAAGCGGCCCATGATTCCCACGGAGGAACCCAAAGAGAAGCTGCGCATGGCACCCCCACCAATCCCTCCCTTAGAAAGACTACCCATGGCTCCTCCTCCTGTACCCCCAGATAGTAGGAGATGCATGCCCCCACCTTTAATCACGCCTGACATGAAGAGACCCATTGTCACCCCTTACGCTATGCCCAAGGTAATGTCAAAGTTACCAATGGGATTCCCACATGTGCCGCCCAAAGACAAGATGCCCATGGCACCCCCTCCCCTGTTGCCCAGAGATCGATTATCTATGGTGCCCTTACTGTCCACAGATTTAAAGAGGTCTATGGTTCCCCAACAGCTGAGGAATCATGTGCCTGCCTCTTCGGTAATCTCAATTTCTAAAGACAAACTGTCACCTTTACCTACTGATGGAAGCTTACCCCTGTTGCCCTCCCTGGTGACTTCTCAACTGAAGAGACCAACAATCATCCACACTGCACGAGCACAACCTATTGCCCCTCCCTTGGTCCCTACTTTCTCTCTGGAGTGTAAACCACTTGAGCCAGCAGCGGAGCAAAGGCTGACTGGCTCGGAGAGTCGACCCTCAGAGAGTCAGAACAGCAATAGAGTCCCCTGTGGGGACGGCAAGAATTGGTTTACTGACCAGAGTGCACTGGCCCACAATGGTTCACAGCACTTAAACAGTGACTTTGCTCCAAAGGAGCGTCTGAAAACGGTCCCGACCCAGTTCCCTCTCCTGGAAAGAGTGAAAGGGAAAACTGCTGATCAGCTGAAGGTTTTAGAGGAGAGTTTTCAGAGGAACAGTTTCCCATCCTACAACGAGGTCGACCATATCGCAGTCACCACCAGACTTTCCAGAGAGGAGGTTGACAGCTGGTTCCTGGAGCGGCGAGCGCTCCGGGACAACCTAGAAAAAGCCCTGTTGAATTCCATGGGCACAAAGAGAACTGACATGTTTGCGGAGAGACGATCACGATCACATTATCCGCATGCTTTCCTGAATGGGATTCACAAACAGATCGGCCTGCCCATGAGCCCTCTCCCTCCCATCATAGCCCCCGCCTCGTCCTCTGGACCTCTGGACAGGAAGTCCCTAAACCTCCTCAAAGATGTCTTTGTACAAACACGGTGGCCTTCACCTGAGGAATACAGTCGTCTGGAGGCGCAGACGGGCTTGGCTCGCACCGACATTGTCCGGTGGTTCAAAGACAGCCGCCTGGCTCTTCGCAGCGGCGCAGCGGAGTGGAAGGAGCTGTTCTACAGGCTGAGCAGCAGCGAGCTGAATGGCCGGCTGATCTCAGAGCAGCCCTGCGGCCTCGCTCCGCCAGGCCAGGAACGGAAGATGCCTAGAGCAGAGTGCACCAAACTAAGCAGAGAAGAGATCAAAGTCTGGTTCAGCAACACCCTAGGCCAGCATGGGCCCGAAGTGGGGAGGAATGGAGGTCAGAACGGAGGCGGCGGAGAGGAGTGTGGGGGCTGGATGGAGGAAGCAATAGGGGTGAAGGCCAGGATGGCGTCACGAGAGCTGGTCTCAGACACGGATTAGGCCACAGGAGGGAGAAGGGGCAGGAGAAGAGGGTAGGAGCTGCTGCCGCTGTCATTTTGCACAGAAGtggaagaaaagaagaggaacAGAAGCTTACTTTGAAATGTTGTATTTTTGGAACCAATGATTTTCACTCTTGCCCTCTTCCATTGTGCCAGCCAGCACACGGCGCCAGTCAGAAGCAGAAGGGGCCTCATCGCTGGGTGTCGCGTCGGGAGCGTTACCGGAGAGGAAGCCGAAACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95848 lncRNA upstream 41388 4090088 ~ 4090634 (+) True G71052
TU95844 lncRNA upstream 136432 3994907 ~ 3995590 (+) True G71048
XR_002650227.1 lncRNA upstream 171819 3956453 ~ 3960203 (+) True LOC111193074
XR_002650229.1 lncRNA upstream 174281 3956444 ~ 3957741 (+) False LOC111193074
XR_002650226.1 lncRNA upstream 174281 3956444 ~ 3957741 (+) False LOC111193074
TU95914 lncRNA downstream 74743 4290459 ~ 4290835 (+) True G71103
TU95923 lncRNA downstream 77521 4293237 ~ 4293456 (+) True G71109
TU95926 lncRNA downstream 86835 4302551 ~ 4302810 (+) True G71112
TU95934 lncRNA downstream 123749 4339465 ~ 4340328 (+) True G71118
TU95935 lncRNA downstream 123749 4339465 ~ 4339907 (+) False G71118
XM_022671980.1 mRNA upstream 26059 3955008 ~ 4105963 (+) True LOC103042852
XM_022671979.1 mRNA upstream 196918 3923972 ~ 3935104 (+) True LOC103032643
XM_022671974.1 mRNA upstream 692867 3420240 ~ 3439155 (+) False LOC103043978
XM_022671973.1 mRNA upstream 692867 3420477 ~ 3439155 (+) True LOC103043978
XM_022671972.1 mRNA upstream 717668 3409670 ~ 3414354 (+) True LOC111193071
XM_022671984.1 mRNA downstream 90949 4306665 ~ 4339082 (+) True dpy19l4
XM_022671985.1 mRNA downstream 93878 4309594 ~ 4339082 (+) False dpy19l4
XM_022671986.1 mRNA downstream 141349 4357065 ~ 4438756 (+) False LOC103028288
XM_015603237.2 mRNA downstream 642132 4857848 ~ 4884488 (+) True LOC103029142
XM_007239844.3 mRNA downstream 700105 4915821 ~ 4921819 (+) False atpif1
TU95569 other upstream 557264 3412451 ~ 3574758 (+) False LOC111193071
TU95561 other upstream 753412 3377684 ~ 3378610 (+) True G70846
TU95246 other upstream 1772793 2358883 ~ 2359229 (+) True G70604
TU95147 other upstream 2862618 1268767 ~ 1269404 (+) True G70522
TU94981 other upstream 3126184 1005483 ~ 1005838 (+) True G70385
LOC111193076 other downstream 740563 4956279 ~ 4957026 (+) True LOC111193076
TU96113 other downstream 740582 4956298 ~ 4980011 (+) True G71247
TU96114 other downstream 740582 4956298 ~ 4980011 (+) False G71247
TU96122 other downstream 747986 4963702 ~ 4967907 (+) True G71249
LOC111193046 other downstream 763751 4979467 ~ 4980022 (+) True LOC111193046

Expression Profile