RNA id: XM_022671985.1


Basic Information

Item Value
RNA id XM_022671985.1
length 2808
RNA type mRNA
GC content 0.49
exon number 19
gene id dpy19l4
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 4306665 ~ 4339082 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gatccagaaaaagagaaggagagaagaagaaagaagatgCTGCATCTGAAGTAGACCAACAAAACCACAATGGTGTAGCTGGTAAGTAAGATGATTTCTCAAGAGATGAGGACCATCCCAATGGAGTTGAAGATGCCGAGCCCATTATTACAATGgagaagacacacacagacagtggtAGCACTATAACTGAGGAGTCCGGATCAGGTGCTGGAAATGTGGACGGTGCCTCACCCACAGGGACAGAGGAGGAAAAAGTGCAGACCACAGGCTCAGCCAAGAGCGcaatgaaaaacagcaaaactgtACTTCTTCAGCGGATAGTGAAGGTGTTCATCGGTTGCCTCGCTGCAGTCACCTGTGGGATGATGTATGCAGTTTATCTGTCTACATACCACGAGAGAAAGTTCTGGTTCTCCAGCAGACAGGAGATGGAGAGGGAGATTACCTTCCAGGGCGGCAGCGGgctttattattactactataaaCACATGCTCTTCGCTTCATCATTTGAGAGGGGTGTATATGAGCTTACACGGGATAACAGGACGGTTTCTGGTCAGACCATAAATGCAGTTGAGCAGCTTTCACTCTACCCAGAACTCCTAAGCAGCCTGCTCTACAGACTCATTGGCAGCCAGAATGCCATCGAGCCAGTGTATTTCTACATAGGGGTGGTGTTTGGCCTGCAGGCAGTGTATGTGACTGCTCTGTTCATCTGCAGCTGGGTGATGAGTGGCACCTGGGTGGCGGGTATGCTCACAGTAGCCTGGTACATCATCAACAGGCCGGACACGACTAAAGTGGATTATGCAATCCCTCTGCGGGACAACTGGGCCCTCCCTTACTTCTCCTGCCAAGTGGCCGCTCTGACCGGCTTTCTGAGCAACAGCATCAGCTCTGCTACAGAGatgttctgtTACCTGCTGATGAGTGTGACCACGTTCAGCTTCATCGTGATGTGGGAGCACAGCCACTATGTGCTGTTTGTACAGGGAGTCGCACTGTTACTGCTGGACTGCTTCGACCTTGTTCCACCTCgcaagACAGCAGACATTCATAAGGTGTACCTGAGCTCCTTGTTACTGGCCTATGTTCTGCAATATCAGAGGCCCAGTCTGCTCTCCTGCCCCCTGCTCAGCCTGCTTATAGCCAGCCTGCTGGCCAGGTACCTGCAGCAAAACATGAAAATGGGCCCCCTGGTGGCGAGACTAATGAAGATTGTGCTGCATCTATACCTGGTCTTCACCACAGGCATCACTTTTAACTACCTAGTTAAGAAAATTCTTCCAACAAATCAGAATGACTTCATACTGAAGTTTCTGGAGGTCAAGTTTGGACTGAATACAACAACGGAGTTCATCCCGAACCTGCTGTTGTGTGAGGAGGGTTTTCAGTCCCCAGGACAGGATTTCTTCCTGCGCCTCACCCAGGCCTCCGTCCTGCCTTTCTATGTCCTGGTGCTTTTAGTGTGCCTCATCTCAACCATGCAGACCATCTACAGGAGACTCAGTGGTGAGCGGTTAAAGGGCAGCGTGCGGATGGAGGACGGGCGAATAGGAGAACGCCCAGAAGTGATCTACCATGTTCTCCACACGCTGCTGTTCGGAGCTCTCGCCATGATGTTCCAGGGGACGAAGTACCTTTGGACGCCGTACGTGTGTGCCTTCACTGCATTTGGTGTGTGTTCTCCAGAGCTCTGGATGACTGTGTTCAGATGGATCAGGCTGAGGTCTGTTCATCCTGTAGTGCTGGCACTAATACTGAGCACAGCTGTACCGACTATCATTGGCTTCAGCCTGTGGAGAGAGtatttcCCGCGTGTGCTGTCTGAGCTGACGGAGGTGCAGGAGTTTTATGATCCAGACACTGTGGAGCTGATGAACTGGATTAAAAGTCAGGCTCCTCTGGCAGCAGTGTTTGCTGGTAGTCCTGCACTGCTGGGCACAGTCAAACTCTGCACAGGGTGGCCAGTCACCAGCCTGCCTCTATATACAGACCTCAACCTGCTGCAGAGGAGTGAGAGTacGTATCAGGTGTATGCTATGCGCTCTGCTGAGGAAGTGTACAAGCTGTTGACTGCTCAGAAGAGCAGCTACATTATTATAGAAGAGGAGCTGTGTAATGAGATGAGTCCCGTTAGAGGCTGCAGGATCAAAGACCTGCTTGACTACGCCAATGGCCATATGGTGTATGATCAAGGTGAAATGTACACTTTTTCCAAGCATGGCCGATTCTGTCACGAGATCAAAATGAACTACTCCCCGTACACCAACTACTTCACTCGAGTGTTCTGGAACCGCTCGTACCATGTCTACCGAGTCAACTCTGTCATTTCCTTCCAGTACTGAGGACTGCTGCTTCCCCATTGCTCCTCTTCTTTCTCCCTGTTTTACTTTCACTCCATGATGAGCTCTGAGTTACTGGAACTCCAGATTCCTGGAGTCTGGGATGAGAAATCCCACACAAGACtttttaaatggattttaaGGTTGCCTCAGATTTCAGTTCTGCACAATGACTTTTGGTGCTGTGATGTGTGAATGTGAAGGAGTGTGTTGAAGGAtggttctgtgtgtgtgcgtgtgtgtgtgcgtgcgttagtgcgtgcgtgcgtgcgtgtgtgctcACTTTCGGTCTGTAGTCCTTTTGAACCGTTTCATGGCCTGGGTCCAGATTCACAAAGTAAAAGCTGATAATGGCCCTCTTTCCCAATAGAAGCTCATTCCTGCTAcctaacaaaataataatcatcCAGCgcattgtgtttattattattaagtaaactgctatctcaatattttgaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95926 lncRNA upstream 6784 4302551 ~ 4302810 (+) True G71112
TU95923 lncRNA upstream 16138 4293237 ~ 4293456 (+) True G71109
TU95914 lncRNA upstream 18759 4290459 ~ 4290835 (+) True G71103
TU95880 lncRNA upstream 116938 4189625 ~ 4192656 (+) True G71075
TU95875 lncRNA upstream 155365 4151858 ~ 4154229 (+) True G71073
TU95934 lncRNA downstream 383 4339465 ~ 4340328 (+) True G71118
TU95935 lncRNA downstream 383 4339465 ~ 4339907 (+) False G71118
TU95931 lncRNA downstream 1605 4340687 ~ 4343158 (+) True G71117
TU95933 lncRNA downstream 1605 4340687 ~ 4341589 (+) False G71117
TU95932 lncRNA downstream 2621 4341703 ~ 4343650 (+) False G71117
XM_022671982.1 mRNA upstream 93878 4132022 ~ 4215716 (+) True LOC103045063
XM_022671983.1 mRNA upstream 93878 4165054 ~ 4215716 (+) False LOC103045063
XM_022671980.1 mRNA upstream 203631 3955008 ~ 4105963 (+) True LOC103042852
XM_022671979.1 mRNA upstream 374490 3923972 ~ 3935104 (+) True LOC103032643
XM_022671973.1 mRNA upstream 870439 3420477 ~ 3439155 (+) True LOC103043978
XM_022671986.1 mRNA downstream 17983 4357065 ~ 4438756 (+) False LOC103028288
XM_015603237.2 mRNA downstream 518766 4857848 ~ 4884488 (+) True LOC103029142
XM_007239844.3 mRNA downstream 576739 4915821 ~ 4921819 (+) False atpif1
XM_007239845.3 mRNA downstream 590095 4929177 ~ 4935065 (+) True hnrnpr
XM_015603236.2 mRNA downstream 590099 4929181 ~ 4935065 (+) False hnrnpr
TU95569 other upstream 734836 3412451 ~ 3574758 (+) False LOC111193071
TU95561 other upstream 930984 3377684 ~ 3378610 (+) True G70846
TU95246 other upstream 1950365 2358883 ~ 2359229 (+) True G70604
TU95147 other upstream 3040190 1268767 ~ 1269404 (+) True G70522
TU94981 other upstream 3303756 1005483 ~ 1005838 (+) True G70385
LOC111193076 other downstream 617197 4956279 ~ 4957026 (+) True LOC111193076
TU96113 other downstream 617216 4956298 ~ 4980011 (+) True G71247
TU96114 other downstream 617216 4956298 ~ 4980011 (+) False G71247
TU96122 other downstream 624620 4963702 ~ 4967907 (+) True G71249
LOC111193046 other downstream 640385 4979467 ~ 4980022 (+) True LOC111193046

Expression Profile