RNA id: XM_022671987.1



Basic Information


Item Value
RNA id XM_022671987.1
length 825
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC111193075
representative False

Chromosome Information


Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 4961589 ~ 4975625 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


tgtaactctTATTTTGTAGAGTCTGCTGGAAACAGCTCAGACGATGATAAACCTTTGAGTGAAatgatgaaaagaaaaaaggaacccGAGAAGAATCAATCTTCAGAGGAAGCACATACAAAGAAGCTCTCCGATTCAGAGGATGATGAAACACTCTTGACAGtgatgaagaagaggaagaacaagaagaagtcAGACACAGAGGAGACAGCAGTGCTGGATAAAAAAGAGCTCTCTGATTCGGAGGATGATAAACCGCTCCTGACGCTgatggagaagaagaagaacaagaaaaatccaGACACAGAGGAGACAGCAGTGCTTGATTCCAGCAGGACAAGAAGTCCAAGAAAGCAAAAAACAGACGCAGAGACCGCCAAGCACAGACAGGCATCACCATCACCAGTGAAGACTCCCcaaaaaagagcaagaaaaggtaaacGGGAAACAAGGAAAACGGCATCAGCACCACCTAAAAAAAGAGGGTGTGCTAAAAAACAGGACACACAGAGACAAGCGCCCTCTTGTGACAGCTCTGATAATGAGCCTTTGGTTGAGCTGGTGAAGAAGAAGAGGCAGCCGGAGATGAAGCGGGCGGTGGTGCTGCTGAAGCGGATGTCTAACAGAGACATTATTAACATGATTACACAGGGACATGAATGCAGCCAAGTGCAGAAGAGCACAGTCAAAGTGGATGAGAAGAGTAAAGCAGAAAGTTCAGACGAGGAGCCGCTGAGTCACAAAGTGAAGAGACTGAAACAGCACAGTAAACCTGTGAGAGGCAGAGCAACCACAGGTAAGAATGAATAGGGTCAGATTATGTCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU96216 lncRNA downstream 6716 4943303 ~ 4954873 (-) True G71316
TU96214 lncRNA downstream 19809 4940908 ~ 4941780 (-) True G71315
TU96202 lncRNA downstream 22214 4936637 ~ 4939375 (-) True G71308
TU96199 lncRNA downstream 26544 4933457 ~ 4935045 (-) True G71305
TU96204 lncRNA downstream 39770 4919555 ~ 4921819 (-) True G71309
TU96234 lncRNA upstream 17068 4985007 ~ 4986652 (-) True G71324
TU96237 lncRNA upstream 22982 4990921 ~ 4993129 (-) True G71325
TU96232 lncRNA upstream 33137 5001076 ~ 5043758 (-) True G71322
TU96243 lncRNA upstream 51113 5019052 ~ 5020681 (-) True G71327
TU96246 lncRNA upstream 60629 5028568 ~ 5089461 (-) False G71328
XM_007236447.3 mRNA downstream 498617 4447172 ~ 4462972 (-) True LOC103026470
XM_022671978.1 mRNA downstream 1051060 3862118 ~ 3910529 (-) False LOC103042532
XM_022671977.1 mRNA downstream 1051060 3862118 ~ 3910529 (-) True LOC103042532
XM_022671903.1 mRNA downstream 1112965 3736626 ~ 3848624 (-) True LOC103042226
XM_022671976.1 mRNA downstream 1319708 3633716 ~ 3641881 (-) True LOC103023864
XM_022671990.1 mRNA upstream 35403 5003342 ~ 5013867 (-) False LOC103041488
XM_022671991.1 mRNA upstream 46933 5014872 ~ 5046137 (-) True kdm1b
XM_007253632.3 mRNA upstream 162663 5130602 ~ 5137613 (-) True nudcd2
XM_022671998.1 mRNA upstream 443777 5411716 ~ 5422882 (-) True LOC103044536
XM_007253626.2 mRNA upstream 532076 5500015 ~ 5511729 (-) True gstp1
trnaw-cca_42 other downstream 37518 4924000 ~ 4924071 (-) True trnaw-cca_42
TU96095 other downstream 77101 4882170 ~ 4884488 (-) True G71235
TU96020 other downstream 548578 4411948 ~ 4413011 (-) True G71175
TU95798 other downstream 1154490 3769161 ~ 3807099 (-) False LOC103042226
TU95670 other downstream 1607990 3347800 ~ 3353599 (-) True G70924
TU96400 other upstream 503727 5471666 ~ 5476375 (-) True G71458
TU96529 other upstream 861682 5829621 ~ 5841687 (-) True LOC103035656
TU96859 other upstream 1809300 6777239 ~ 6824756 (-) True G71771
TU96917 other upstream 2089171 7057110 ~ 7057643 (-) True G71826
TU96981 other upstream 2341836 7309775 ~ 7312926 (-) True G71862

Expression Profile