RNA id: XM_022671989.1


Basic Information

Item Value
RNA id XM_022671989.1
length 1720
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC103041488
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 4958105 ~ 5013867 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGGGTGTGCGGGTCTGGGGTAGAGGCGGGGTTCCGGGTCTCGGCCGCGGTTCTGGTTCTGGGTTAAAGCCCGGGTTTAACCTGCAGCGGCGGCGGCGTATACGCGCAGGAGCATGTTTGGGGAGAGGCTAAGTGACTAGCCGGCTGCTACATCTGCATCAGGCCGGACTGCAGACACTTCACCCCGGCCACAGAGCCGCCGGCCCCCCGCTGCCCTAACTCCGCTCCGGAGCTCCGGGTCAGGCTGTGGGGTCTTCTGTACATCTCCTGCTTTACTACAGCTGTGTTTATTACCCGCACAGCTGCTGCACTGATGGCCTGAGCTGGGCTGGAGGATGCTGTGGCTCAGCTGATCCATCTTTAATCATCTGTGTTTTTAAACCGAGAGGAGCTTCTGAGGAACCCCAGCCCAGGTGACCAGCTGTAGGTCCCAGAGCAGGAGCTGCTGCCATGACTGACACTCAGCCCAGAGATGGGTCAGCTGGAAACAGCTCAGACGATGATGAACCTTTGAGTGAAATGGCGAAGAGGAAAAAGGCACCCGAGAAGACTCAATATTCAGAGGAAGCACataaAAAAGAGCTCTCCAAATCAGAGGATGATGAATCGCTCCTGACGCTGATGAAGaggaagaacaaaaaaacaggcaCAGAGGAGACAGCAGTGCTAGATTCCAACAAGACAAGAAGTCCAAGAAAGCAAAAAACAGAAGTAAAGACCGAAAAGCACAGACAGGCATCACCATCACAAAAGACCTCCcaaaaaagagcaagaaaaggtaaacGGGAAACAAGGAAAACGGCATCAGCACCACCTAAAAAAAGAGGGTGTGCTAAACAAAAGGACACACAGAGACAAGCGCCCTCTTGTGACAGCTCTGATAATGAGCCTTTGGTTGAGCTGGTGAAGAAGAAGAGGCAGCCGGAGATGAAGCGGGCGGTGGTTGCTGCTGAAGCGGATGTCTAACAGAGACATTATTAACATGATTACACAGGGACACGAATGCAGCCAAGTGCAGAAGAGCACAGTCAAAGTGGATGAGAAGAGTAAAGCAGAAAGTTCAGATGAGGAGCCGCTGAGTCACAAAGTGAAGAGACTGAAACAGCACAGTAAACCTGTGAGAGGCAGAGCAACCACAGATGTGAAAAGTGAGGCAGACAGCTCGGACGAAGAGCCACTGACTCACAGAGTGAAACAGCACAGTAAGCCTGTGAGAGGCAGAGTGGCAGCAGGTCTGAGTGTGAGAGCATAACTGAGAAGTGGATTtgttaatatttgcattttactGCAATCATGAAGCCTGttagaaaaaagaaatagatttttattaatgtattatgtaCTGACGTAGATCATTGTTCatcattttatattgtttaaacatttatatcagctgattttttttgtgttttttttatgttgcacatgCTGATGTTttgattttaatgtgtttgtagTAAAACACTGCACTAAATGAAATGCAGAGACTGAGCCTTACTCAGGGTTTCTAACGAGGAAAGACATGAGTaacatatgatttaaaaaaagtctaGAAAATGATGAGATGAGTGTAAAACTGAGGAAAATTGtagtttaaacatgtttaaagtaatcagtgttttgtatttttgatggATATATGCTTCCTGCTTctttaatgtgttttccttaGAGCCCCTTTCCTGTATATGAATTAAAATGGTGTGTTTAATTAAGGCAA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006813 potassium ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96216 lncRNA downstream 3232 4943303 ~ 4954873 (-) True G71316
TU96214 lncRNA downstream 16325 4940908 ~ 4941780 (-) True G71315
TU96202 lncRNA downstream 18730 4936637 ~ 4939375 (-) True G71308
TU96199 lncRNA downstream 23060 4933457 ~ 4935045 (-) True G71305
TU96201 lncRNA downstream 25938 4911620 ~ 4932167 (-) True G71307
TU96243 lncRNA upstream 5185 5019052 ~ 5020681 (-) True G71327
TU96246 lncRNA upstream 14701 5028568 ~ 5089461 (-) False G71328
TU96267 lncRNA upstream 55032 5068899 ~ 5075605 (-) True G71338
TU96244 lncRNA upstream 68306 5082173 ~ 5089461 (-) True G71328
TU96253 lncRNA upstream 68306 5082173 ~ 5089461 (-) False G71328
XM_007236447.3 mRNA downstream 495133 4447172 ~ 4462972 (-) True LOC103026470
XM_022671978.1 mRNA downstream 1047576 3862118 ~ 3910529 (-) False LOC103042532
XM_022671977.1 mRNA downstream 1047576 3862118 ~ 3910529 (-) True LOC103042532
XM_022671903.1 mRNA downstream 1109481 3736626 ~ 3848624 (-) True LOC103042226
XM_022671976.1 mRNA downstream 1316224 3633716 ~ 3641881 (-) True LOC103023864
XM_022671991.1 mRNA upstream 1005 5014872 ~ 5046137 (-) True kdm1b
XM_007253632.3 mRNA upstream 116735 5130602 ~ 5137613 (-) True nudcd2
XM_022671998.1 mRNA upstream 397849 5411716 ~ 5422882 (-) True LOC103044536
XM_007253626.2 mRNA upstream 486148 5500015 ~ 5511729 (-) True gstp1
XM_022672001.1 mRNA upstream 518004 5531871 ~ 5596025 (-) True trpc3
trnaw-cca_42 other downstream 34034 4924000 ~ 4924071 (-) True trnaw-cca_42
TU96095 other downstream 73617 4882170 ~ 4884488 (-) True G71235
TU96020 other downstream 545094 4411948 ~ 4413011 (-) True G71175
TU95798 other downstream 1151006 3769161 ~ 3807099 (-) False LOC103042226
TU95670 other downstream 1604506 3347800 ~ 3353599 (-) True G70924
TU96400 other upstream 457799 5471666 ~ 5476375 (-) True G71458
TU96529 other upstream 815754 5829621 ~ 5841687 (-) True LOC103035656
TU96859 other upstream 1763372 6777239 ~ 6824756 (-) True G71771
TU96917 other upstream 2043243 7057110 ~ 7057643 (-) True G71826
TU96981 other upstream 2295908 7309775 ~ 7312926 (-) True G71862

Expression Profile