RNA id: XM_022671992.1


Basic Information

Item Value
RNA id XM_022671992.1
length 3547
RNA type mRNA
GC content 0.48
exon number 23
gene id cfap69
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5048506 ~ 5067507 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCTAGGTTACTGTTGTGTATATGGGTTGTATCTAGCGGTATAAAGCGGTACTCGGACAGAGAGCTGTGTTTTAACTCCGGTTTAACTCGGTTATCTTCGTTACTGCAGGTTTTTAATGCGGTTTAAAGTGAGAACAGCGCTGTCGGGATGTTCTCGGTGGAGGCGCGGGTGACGGGCAGAGCGCAGAAAGGCTTCAGGACCGGGAGAGCCGCGCCACACTTCCCCTCCATAACCCAGCTCCACACCCACACCTCCCCCGAGCAGCCGGAGGCTGCTAGGCATCCAGACCTGCCTCGTGTGATTCGCCTGCTGGAAGAGCCAGTTTCAAGCTCACTAAAGGAGAGGCACATATTTGCGTTGAAGAAAGTGGTGAAAAGATGTCAAACAGGATTTCTTCTGAAAGATCTGGCAGATCTTTTCAGAATTCTGAACATCTGTGCTGAAAGATCTAAAGATCATCCTGAGTATGCTCCTGTACTGTGTGACCTGCTACATATATGCAGGCTTCCTTTCTTGAAGGAGAAGGCTTCTGATGAGCCGAACTATGCCAGCGTTGTGACAGACTCTCTGTCTCAGCTGGGTTTATTCATGAGGGTGCCAGACTGTAAAATCAGAGAGCAGATCAGCACTTCCATCATATCCCTGTACAGCACAGACAAGGCAAGACAATATGATGGTGTGTGTCCCATAAGCCTGGGTTACAGGCAAGAGCTGGTGGAGTGCAGTGGTCTGGCAGAGACTTTGACGATGTCTCTGGCTCTTCTGGAGAACCAGCTGCCTGCCAAACATCAGGTCCTAAGGGCTCTACAGATGCTCTCCAGCTCCTCTTTCAACTGTAGCTTGATCCTGAAGGCAGAAGGAGCCCAGAAAATCTGCTTCCACATGAACGAGCCGGACCCATCCGGGCAGGTGTTGTTTCGCTCCTCCGAGATCTTGTGGAACCTTCTGGAGAATGGCTCCAGGGAGGAGGTCACTAGCCAGCTCAGCAACATGGACTGCATCATGTTCTTGAAAGAGGCTTTTTTGCATCATCTTCTTGATGGCTACCGTCATTATGACCAGCAGCTCCGAAATGACCTTCTAGTGATTATAACCCTGATTGCTGAAAACCCCAGTGCCCCACTAATTGAGAGTGGATTTGCCAAGCAACTTATTCTTTTTGTCACTTTTCCTGAAcTGAAGAGCCACAACCCACTGATCCGAAAACTCAAGCTGGCCTTCACCAATGAGGACTTTGAGATGAAGAAGTTACTGCTGAATCTGGTTGTGGTTCTGTCCAGAGACCTTTCAGCGGTTCAGCTGTTTAAAGAGAGCCGTGTGATGCTGGCCCTGATGCTACTGGTGCGGCCCAGTTCGTCTGACAGCCGGCCCAGTGGAAAGGGCAGACGCAGCTGGACTCCTGTTCAGCaggaggagctgcagctgcaggctTTAGCCACCTTGGCTACGGTGGCACCGCTCATGATAGAGGAGTATATATCGTGCCAAGCCAACGTCTgcctgctgatgctgctggagTGGTGCACTCAGCAAGATGGTTATTTTGGCCAGGGTCATGCTTTCCACGGGGCTGGAGGACGGGGTGGGAAGAAGGCTCAGATGAGGTACTGCGTTCGCCTCCTCAGGTGCATGACATCCCTTAGCAACAACATCATCAACCAGGATCTCTGTGACCAAGGAGCCATCAGCCAACTTCTTGGGTTGCTAAGGCGATTCcaggaaagagaggaagaggaagatgcaGTGTGTGTTGAGATTCAGACAGACGTGCTTCTCACCCTGACTACCCTCTGTGAGGAAGACATGCACAGGAAGGAGCTGTTTGGTTCTGAGGGAGTGGAGATGGTGATCCGCTATCTGAAAATGAACCCGGCTCAACTCCAAAGCGGCCTGGGACACAACAGACTGTTTGCATCCAcagtggactgtgtgtgGTCCTGCATTGTTGGCTGTTACTTAACAGAGGATTTATTTCTGGAGAAGGAAGGAGCTTTTCTCTTACTTGACTTTCTCCATTTAAGCCCCAGGAGCATGAAGGGGGTGCTGCTGGGGACCCTGCTGGAGCTGTGTGACAACCCCAAGACCCTGGCACATGTCACAGCCTGGAGGGGAGAGAAGGAGCTCACTGCCCCTGCACTGCTGCTTCAGATGTGGCGGCAGGAGGAGGCAGAGCTTGGAGTTAAAAGAGACCAGCACAGCAGAATCACTGATGTGAAGAAGCCTATTCTTACACGGTATCAGGAGGAGGAGCCACTAGTGTCTGTACCTGCGAACACACCAAGTTCCGCGGTTATCGATGTGTCCGAGAACCTCCGCTCAAAAATCTACGCTCTGTTCCTCAGACTGGGCTTTCAGGACCTGCAAGGTTTAACTGCAGAGGACTACATCACCTTAAGCATAGTGAGCAGATACTTGGACTTTAAGATAGGAGAGGTGTGGGCTGAGATTTCAGCTGAGCTGGAGTTGGAAGGGGTCAGGCCCATTACTCCGGATGCAGAGGCTCTCAGAACCATCATCCAGGCCAGTGAAGACACGGCCAAACATGTCTGCTCACTGCAGCAAAGCATTCTGGGCCAACAGGAACAGGAGGAGCTCAAAGAAGAGAAACGTGCATACGAAGAGATGAGCCTAAACCGCAAGCAACATGAGCTGACCATGAAGTCCAGGCAGCATTATATCGCTAAGACATCAGACTATGAGATcttaaagGAGTCGAAGCGACTGCAAGAAAGGTCTATTGAATCTTCACGGCCGAAGGACAGACCAGAGGGATTTATTTTTCACTCCACTCAAATCCACGGCCTGCAGACCACTAATTTCTACAGTCGTGTGGTGACGATAGAGAGCACCCCTGCAGCTCTGACTGGAGGACCTCTGGCAAATACAGATTTAGCCCTGGAGAGGGTCCCTATTCAGGGAGGTGCACTGAGAAAAGTTAACCCTACAAATGCTGAGCATGAGCTTCCCAATTCAGTCACTGTCAAATAAACACCATAGTAAAGACTATTAACCTCAAATACCCAATCCATCAGCTATGAAGCCTCCTGGGAGCAGAGTGTACTCCTGTGCactctgactgactgactgtgtGTAGAATGATTGTAAGTAACTGTGAGTAGATCCTATAGAGATTATGCTCATCTCTCAGGTGTATCCCAGCATTCCTAaaatagattatatatattttttgttaagctCAAAAAGTGTCCAGTGAAACTGATAtggttcatgtttattttatgtaataagCTTTTTTCTTTATGCTTTAGTCTTGCAAATAcccatctccatttttgtcatgtTTTGCTTGTTGACATCATTTGAATCTGTAAATTGTGTGGAAATTTAATAATAcattgaattatttttatttagttgtaataaaatattttataatataatataatataatagaaacCCATCAGATTCGCGTTatgtcaaaatgtgaaaatcagcaaaatggagatacaaggtttttgcctGACAGGGTCATTATGTACACTGTGGCACAGCTCatctataattaaaataaaatgtgacatAGAA

Function

GO: NA

KEGG:

id description
K24227 CFAP69; cilia- and flagella-associated protein 69

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96138 lncRNA upstream 4748 5001091 ~ 5043758 (+) True G71260
TU96119 lncRNA upstream 42281 4958156 ~ 5006225 (+) True G71248
TU96132 lncRNA upstream 55327 4990852 ~ 4993179 (+) True G71256
TU96110 lncRNA upstream 79587 4963971 ~ 4968919 (+) True G71246
TU96107 lncRNA upstream 106389 4941409 ~ 4942117 (+) True G71244
TU96175 lncRNA downstream 66228 5133735 ~ 5137567 (+) True G71287
TU96186 lncRNA downstream 137709 5205216 ~ 5207077 (+) True G71294
TU96198 lncRNA downstream 228171 5295678 ~ 5298321 (+) True G71304
TU96333 lncRNA downstream 256162 5323669 ~ 5324887 (+) True G71397
TU96347 lncRNA downstream 341524 5409031 ~ 5410313 (+) True G71411
XM_007239848.3 mRNA upstream 93617 4943206 ~ 4954889 (+) True dnajc8
XM_007239845.3 mRNA upstream 113441 4929177 ~ 4935065 (+) True hnrnpr
XM_015603236.2 mRNA upstream 113441 4929181 ~ 4935065 (+) False hnrnpr
XM_007239846.3 mRNA upstream 113441 4929183 ~ 4935065 (+) False hnrnpr
XM_007239844.3 mRNA upstream 126687 4915821 ~ 4921819 (+) False atpif1
XM_022671993.1 mRNA downstream 1394 5068901 ~ 5082606 (+) True LOC103041177
XM_007253633.2 mRNA downstream 24371 5091878 ~ 5117839 (+) True LOC103040455
XM_007253634.2 mRNA downstream 24374 5091881 ~ 5112015 (+) False LOC103040455
XM_007253631.3 mRNA downstream 56447 5123954 ~ 5130557 (+) True ccng1
XM_007253630.3 mRNA downstream 76258 5143765 ~ 5173256 (+) True gabra6
LOC111193046 other upstream 68484 4979467 ~ 4980022 (+) True LOC111193046
TU96113 other upstream 68495 4956298 ~ 4980011 (+) True G71247
TU96114 other upstream 68495 4956298 ~ 4980011 (+) False G71247
TU96122 other upstream 80599 4963702 ~ 4967907 (+) True G71249
LOC111193076 other upstream 91480 4956279 ~ 4957026 (+) True LOC111193076
TU96351 other downstream 432401 5499908 ~ 5505638 (+) True G71414
trnaa-agc_14 other downstream 969295 6036802 ~ 6036874 (+) True trnaa-agc_14
trnaa-agc_15 other downstream 970169 6037676 ~ 6037748 (+) True trnaa-agc_15
TU96736 other downstream 1458134 6525641 ~ 6538794 (+) True G71682
TU96877 other downstream 1814080 6881587 ~ 6885541 (+) True G71788

Expression Profile