RNA id: XM_022671996.1


Basic Information

Item Value
RNA id XM_022671996.1
length 1518
RNA type mRNA
GC content 0.58
exon number 9
gene id gabrb2
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5182503 ~ 5313658 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGCATGCGCGCCTCATTGCCTCCACTGCGCTGGACTAAGTTGGACGTGCGCTGCCTTCGCCAGGTCCGCGAGCCCCGTTCAGCAGAACTGTTGCGATGGAGCGGCAGAGGAAAACACAGTGCATCTTCCTGCTGTGTCCCCTCATCATGACGGCCGTGTGCGCGCAAAGcAACAGAGACCCCAGCAACATGCCCGTGGTGAAAGACACGGTGGATAGACTCATGAAGGGATACGACATTCGGCTGAGGCCAGATTTCGGAGGGGCTCCGGTGGCGGTGGGGATGAACATAGACATTGCCAGCATTGACATGGTGTCCGAGGTGAACATGGACTACACCCTGACCATGTACTTCCAGCAAGCCTGGAGGGACAAGCGCCTCTCCTACTCAGAGATCCCCCTGAACCTGACGCTGGACAACCGCGTGGCCGACCAGCTGTGGGTCCCCGACACGTACTTCCTCAACGACAAGAAGTCCTTCGTCCACGGCGTCACCGTCAAGAACCGCATGATCCGCCTGCACCCCGACGGAACCGTGCTGTACGGACTGAGGATCACCACCACTGCGGCCTGTATGATGGACCTGAGACGCTACCCACTGGACGAGCAGAACTGCACGTTAGAGATCGAGAGCTACGGCTACACCACCGATGACATTGAGTTCTACTGGCGAGGAGGAGACGGCGCTGTCTCTGGAGTGGAACGTATCGAGCTGCCTCAGTTCTCCATTGTGGACTACAAACTCATCTCCAAGAACGTGGTCTTCTCTACAGgttcaTACCCACGGCTGTCCCTGAGCTTTAAACTGAAGAGGAACATTGGCTACTTCATCCTGCAGACGTACATGCCTTCCATCCTAATCACCATCCTCTCCTGGGTCTCCTTCTGGATCAACTACGATGCCTCCGCTGCCCGTGTGGCTCTAGGTATCACCACTGTGCTGACTATGACCACCATTAACACTCACTTGCGAGAGACCCTCCCCAAGATCCCCTATGTGAAGGCCATAGACATGTACCTGATGGGCtgctttgtctttgtcttcCTGGCCCTGTTGGAGTACGCCTTCGTCAACTACATCTTCTTCGGCCGAGGCCCTCAGAGACAGAAGAAGGCGGCGGAGAAGGCTGCCACCGCCAACAACGAGAAACTGAGGCCAGATCCCAACAAGATGAACCCAGATGACATCCGGCTGACCACGGTGGAGATGAAGAACGAGATGGGCCCGGGGGATCTGTCCCGGGGTCTGGGGGACccccgcagcagcagcatgctGGCCTACGACAGCTCCACGCTGCAGTACAGGCGGGCCGCCCTGGCGCGCCACAACTACGGCCACAGCGGCCTGGAGCGCCACTCCACGCAGAAGAAGAGCCGCCTGAGGAGACGGGCCTCGCAGCTCAAGGTCAACATCCCCGACCTGTCCGACGTCAACTCCATCGACAAGTGGTCCAGGATGATCTTCCCCACCGTCTTCTCCTTCTTCAACGTGGTCTACTGGCTCTACTACGTCCATTAA

Function

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96175 lncRNA upstream 44936 5133735 ~ 5137567 (+) True G71287
TU96138 lncRNA upstream 138745 5001091 ~ 5043758 (+) True G71260
TU96119 lncRNA upstream 176278 4958156 ~ 5006225 (+) True G71248
TU96333 lncRNA downstream 11679 5323669 ~ 5324887 (+) True G71397
TU96347 lncRNA downstream 97041 5409031 ~ 5410313 (+) True G71411
TU96348 lncRNA downstream 97041 5409031 ~ 5410023 (+) False G71411
TU96416 lncRNA downstream 216006 5527996 ~ 5532969 (+) True G71473
TU96417 lncRNA downstream 216465 5528455 ~ 5532295 (+) True G71474
XM_007253630.3 mRNA upstream 9247 5143765 ~ 5173256 (+) True gabra6
XM_007253631.3 mRNA upstream 51946 5123954 ~ 5130557 (+) True ccng1
XM_007253633.2 mRNA upstream 64664 5091878 ~ 5117839 (+) True LOC103040455
XM_007253634.2 mRNA upstream 70488 5091881 ~ 5112015 (+) False LOC103040455
XM_022671993.1 mRNA upstream 99897 5068901 ~ 5082606 (+) True LOC103041177
XM_022671997.1 mRNA downstream 27660 5339650 ~ 5408015 (+) True atp10b
XM_022671999.1 mRNA downstream 118699 5430689 ~ 5476431 (+) True atp7a
XM_007253628.3 mRNA downstream 168398 5480388 ~ 5485164 (+) True LOC103038898
XM_007253644.3 mRNA downstream 179432 5491422 ~ 5494564 (+) True LOC103044251
XM_015606961.2 mRNA downstream 360728 5672718 ~ 5678874 (+) True LOC103037414
LOC111193046 other upstream 202481 4979467 ~ 4980022 (+) True LOC111193046
TU96113 other upstream 202492 4956298 ~ 4980011 (+) True G71247
TU96114 other upstream 202492 4956298 ~ 4980011 (+) False G71247
TU96122 other upstream 214596 4963702 ~ 4967907 (+) True G71249
LOC111193076 other upstream 225477 4956279 ~ 4957026 (+) True LOC111193076
TU96351 other downstream 187918 5499908 ~ 5505638 (+) True G71414
trnaa-agc_14 other downstream 724812 6036802 ~ 6036874 (+) True trnaa-agc_14
trnaa-agc_15 other downstream 725686 6037676 ~ 6037748 (+) True trnaa-agc_15
TU96736 other downstream 1213651 6525641 ~ 6538794 (+) True G71682
TU96877 other downstream 1569597 6881587 ~ 6885541 (+) True G71788

Expression Profile