RNA id: XM_022671998.1


Basic Information

Item Value
RNA id XM_022671998.1
length 1896
RNA type mRNA
GC content 0.53
exon number 5
gene id LOC103044536
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5411716 ~ 5422882 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agagagagtcagtcgGTCAGTCCATGTTTTCCCGCGCTCACGTGCCCGCGCGTGCACGCGTGTTGTTCAGTAGTGTGGCTCCGATGCCAGAAGCTCAGCTTAGCAACACtacagctgctgctgccgctgctgtcGGTGGCGTTGCTCTTATTATTCAGCGATTTTTTGGATCAAAATTACACAGTTTTGTCATGAGTCGAGTCCCAGCGGTGGAATAAACGCTCCCTTTGTTTATTGATTGGAGAAGATTATGAGATTTCATCGGAAAGGTTCCtaaaacaaGATGAAACGAGGCAGAGTAAACATTGCGGCAAAGTGCCAGAGCTTTAGCCCTACTCAAAGCAGAGCCAAGAAACAGAAGACTGGCCAGGGGGTGTTCACCTTACAGAGCTATGCCCAGGACTGGGGCAACCTGCCCCATCACATTGTTCTCCACATATTCCAGTACCTGTCGCTGGTGGACCGGGCGCGGGCCTCGTCCGTGTGCCGCCGCTGGAACGAGGTGTTTCACATCCCTGAACTTTGGAGGTGTTTTGAGTTTGAACTGAATCAGCCAGCCACATCCTACCTGAGGTCCACACACCCTGACCTCATTCAGCAGATCATCAAGAGACACGCTCAGCACCTGCAGTACGTCAGCTTCAAGGTTGACAGCTGCACGGAGTCCGCAGAGGCAGCGTGTAACATCCTGTCCCAGCTGGTGAACTGCACCATTAAAACTCTGGGCCTGATCTCCACGGCACGGCCCAGCTTTATGGATGTCTCTCAGTCACACTTCGTGTCTGCGCTGACGGTGGTGTTTGTGAACTCCAAGTCCCTGTCCTCCATAAAAATCGATGATACGCCTGTCGACGACCCCTCCCTGAAGGTTCTGGTGGCTAACAACAGTGACACCCTGAAGCTTTTAAAGATGAGCAGCTGTCCACACGTCTCTCCTGCAGGGATCCTGTGTGTGGCAGACCAGTGCCACGGCCTACGGGAGCTGGCCCTCAACTACCACCTGCTGAGTGACGAGCTGCTGCTGGCGCTCTCCTCCGAGAAGCACGTGCACCTGGAGCATCTGCGCATCGACGTGGTGAGCGAGAACCCGGGACAGACGCAGTTCCACAGCATCAAGAAGAGCAGCTGGGACGCCCTCATCCGCCACTCGCCGCAGGTCAACATCGTCATGTACTTCTTCCTGTACGAGGAGGAGTTTGAGCCGTTCTTCTGCGAGGAGACGCCCGTCACGCACCTGTACTTTGGCAGGGCTGTCAGTAAGGACATGCTCGGGCGCATCGGGCTGAACTGCCCGCGCCTGGTGGAGCTGGTGGTGTGCGCCAACGGGCTGGAGCCTCTGGACGAGGAGCTGATCCGCATCGCTGAGCGCTGCAAGAGCCTGACTGCCATCGGCCTGGGAGAGTGCGAGGTCACCTGCAGCGGGTTTATGGAGTTTGTAAAGATGTGTGGTGGACGCCTCAGCCAGCTGTCCATCATGGAAGAGGTGCTGATACCGGACAACAGCTACAGCATGGAGCAGATACACAGCGAGGTGTCCAAACATCTCGGACGCATCTGGTTCCCTGACATGATGCCCACCTGGTAGACACATACATGCATACgtatacatacagtactgtgcaaatgtttcaTCCAAATCAAGGGTATTTCTAGACCTCACCCTGCCCTTTAGCGCCCTCTGCTGCCCattacattactacatttttgtatgtttgttaaactaatatattaatttaactgtttttaataataaaaataaaagaatcaggCAGCTAAATGCACAAGCTGCTGAATCTGCTTTGGTTTGTGTGAATCAGGTTTCTAAATGAACCAAACTGACAGAAGAAGTAACATTTCACCAGTTTCCTGGTAAACTGTATGGTCACCATCagtctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96332 lncRNA downstream 88074 5323344 ~ 5323642 (-) True G71396
TU96295 lncRNA downstream 180902 5156618 ~ 5230814 (-) True G71361
TU96246 lncRNA downstream 322255 5028568 ~ 5089461 (-) False G71328
TU96244 lncRNA downstream 322255 5082173 ~ 5089461 (-) True G71328
TU96253 lncRNA downstream 322255 5082173 ~ 5089461 (-) False G71328
TU96407 lncRNA upstream 67481 5490363 ~ 5491941 (-) True G71464
TU96415 lncRNA upstream 104777 5527659 ~ 5527874 (-) True G71472
TU96437 lncRNA upstream 176832 5599714 ~ 5599952 (-) True G71488
TU96448 lncRNA upstream 220008 5642890 ~ 5678873 (-) True G71496
TU96453 lncRNA upstream 256923 5679805 ~ 5680110 (-) True G71501
XM_007253632.3 mRNA downstream 274103 5130602 ~ 5137613 (-) True nudcd2
XM_022671991.1 mRNA downstream 365579 5014872 ~ 5046137 (-) True kdm1b
XM_022671989.1 mRNA downstream 397849 4958105 ~ 5013867 (-) True LOC103041488
XM_007253626.2 mRNA upstream 77133 5500015 ~ 5511729 (-) True gstp1
XM_022672001.1 mRNA upstream 108989 5531871 ~ 5596025 (-) True trpc3
XM_022672005.1 mRNA upstream 108989 5531871 ~ 5596003 (-) False trpc3
XM_022672004.1 mRNA upstream 108989 5531871 ~ 5595947 (-) False trpc3
XM_022672003.1 mRNA upstream 108989 5531871 ~ 5595947 (-) False trpc3
trnaw-cca_42 other downstream 487645 4924000 ~ 4924071 (-) True trnaw-cca_42
TU96095 other downstream 527228 4882170 ~ 4884488 (-) True G71235
TU96020 other downstream 998705 4411948 ~ 4413011 (-) True G71175
TU95798 other downstream 1604617 3769161 ~ 3807099 (-) False LOC103042226
TU95670 other downstream 2058117 3347800 ~ 3353599 (-) True G70924
TU96400 other upstream 48784 5471666 ~ 5476375 (-) True G71458
TU96529 other upstream 406739 5829621 ~ 5841687 (-) True LOC103035656
TU96859 other upstream 1354357 6777239 ~ 6824756 (-) True G71771
TU96917 other upstream 1634228 7057110 ~ 7057643 (-) True G71826
TU96981 other upstream 1886893 7309775 ~ 7312926 (-) True G71862

Expression Profile