RNA id: XM_022671999.1


Basic Information

Item Value
RNA id XM_022671999.1
length 9380
RNA type mRNA
GC content 0.47
exon number 24
gene id atp7a
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5430689 ~ 5476431 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcaGCTCTGCGCAGTTTGTGGCAGCTCTGCGCAGTTGGTGGCGGGTGTTGAGTCTCCTGAGCGcggtgtgtgtggatgtgggcAGGTCTGATTAATCTGTTGTGAGAGGAGACTCGGGCAGTGTGACAGCTCCACACGTACCGCCGGGCTCTGCTCTCTCACTGCGGGGGAATGGTTGACCCGGTGTCGGCGTGGTTTCAGCCTTCAGCCGGCGGCGAGGAGGAGCGCGGAGCTCCGCGGGTACTGAGCGCTGTTAGCCGTGGAGGCTAGAGTTAGCTAGCCTAGCtctgttagctaactaactctcTCTATCAGAGGATTTACATCACATACCAGCCCGAAGAAATCTCTACAGGGCTCTCACACTAAGAGTAAATGATGGCTCAGAGCGGTGGCCTGTGTTCTGTGACCCTCACTGTTGAGGGGATGACCTGTGGCTCCTGTGTCCAGACCATAGAGCAGCAGATTGGTGGGCTTTCAGGAGTTATTCATATAGAgGTTTCCTTGGAACAGAAGAACGCCACTGTGATATTTGACCCAGCCAGCCACAGCCCAGAGTCTCTAGCAGATGCCATTGAGGACATGGGTTTTGAGTCAGACGTGACCAACGCTTCCCCGACCACCCCTGTACAGACAGAAACCCGGGTGTACCCCACGACTGGCTGTAGCGCAGAGGCTCAGCGGCAAGCTCACACCCAGCTGGCCCAGCTGAAGGGTGTGGTGGAAACCCAAGAAAGTATTGAGGGCAAGGGCCTGGCTGTCACCTTTATTCCGACAGTGGTGAGTCCAGAGCGGGTCCGTGAGGCGGTGAGTTGCCTCGTTCCGCAGCCTGCGAGTACCTCAGAGCGGTCGACAGGCCGTGGCTCCGGCAATGTGGAGGTAGTGAAGATGCGGATTGATGGAATGGTCTGCCTGTCCTGCACCACAACCATTGAGGGCAAGATTGGGAAGTTAAAAGGGGTGGAGAAGATTAAAGttgGTCTCGAGTCTCAGGAAGCCACGGTGCTCTACTTACCTTACCTCATCACAGTGGAGGACATAGTGAACCAGATTGGGGTGGCAGGATTCAAGGCCTCTGTGAAATCCAAACCCCGCCAGCTGCAGCTCTCCTCAGTGGAGCGGTTGCTGAATGCCTCACAACTGAGTAGTCCCACCTCACCAGAGGAGAAGACCTCCACACAGGCCCTCGAgtccactaccaccaccactatcACTACTCTGATTAATGTGTCAGGAATGCACTGCAACTCCTGTGTGGTGAACATCCAGGACAATATAGGCAAAGTGCGGGGGGTCAGCTCTGTGCAGGTCTCTCTGGAAAAACGACAGGCTGTAATCCAGCACAACCCAAGTATTGTGACTGTAGCGGCACTGCAGAGGGCTATTGAGGCTCTTCCTCCTGGGAAATTTAAGACCCAGTTAGACGGCCAAGACGCCACCTTGCCCTCGTCTCTCTCAGAACTGTCCTTGCTCCAGCTTTCTGAACAGCCGCTGGCCTCCACGGTGCAGATCCACATAGAGGGCATGACCTGTAACTCCTGTGTTCAGTCTATTGAAGGAACCATTTCTCAAAGGAAAGGTGTGAGATCTGCACAGGTGTCCCTGGCCAACCATCAGGGTACGTTTGAGTTTGACCCACTTCTGACCGCACCGGAAGAACTGCGCGCCGCCATTGAGGAAATGGGGTTTGATGCTTTTCTGCCCGAGACTAATTCACTAATTCCAGTGAAAAGCCCTCCGTCTATAAGGAGCTCACCCTCCTCCCCTGCGCTGTCCACCAtaaaggagaaggagaaggagctGGAGAGTGACACAGAGGCAGGGTTGAACACACATTCCAAATGTTTTATCCAGATCGGGGGCATGACCTGCGCCTCCTGTGTGGCCAACATCGAGAGGAATCTGAAAAACGAGCACGGAATACACTCAGTGCTGGTGGCACTAATGGCCAGTAAAGCAGAGGTGCGTTACAACCCTGCAGTCATGGACCCTCTCAAGATTGCGGAGTGCATCAGAGAGCTGGGCTTCACCGCCTCCGTCATGGAGAACTACGATGGCTCCGATGGCGCTCTGGAGCTTGTGATCAGAGGTATGACGTGTGCCTCCTGCGTCCACAAAATCGAGTCTAGCCTGATGAAACAGAAGGGAATCGTATATGCCTCGGTTGCCCTGGCAACAAATAAAGCCCACGTTAAATATGACCCAGAGGTGACCGGCCCAAGGGACATAATCAGACTGATTGAGAATTTGGGGTTTGAAGCTTTGCTGGTGAAGAAGGATCGTTCAGGAAGTCATCTGGATCACAGTATAGAGATACAGCAGTGGAAGAAATCCTTCCTCATCAGCCTGGTGTTCTGCGTTCCTGTTATGGGAATGATGATCTACATGATGGTGGTCGACCACATGATCGTAATGTCCCACCATCACAACGCCACACGAGAAGACAGACAGATGTACCACTCCCACATGTTCCTGGAGAGGCAGCTCCTACCCGGCCTGTCCATCATGAACCTGCTCTCCTTCCTCTTCTGTGTGCCTGTGCAGTTCATTGGAGGCCGTCACTTTTACGCCCAAGCATATAAAGCTCTAAAGCACTGGTCAGCCAATATGGACGTGCTGATAGTCCTGGCCACGTCCATCGCTTTTACTTACTCCCTGGTCATTCTGATGGTTGCCATGATTGAGAAAGCGAAGGTGAACCCCATCACCTTCTTTGATACGCCACCGATGCTCTTCGTCTTCATCTCACTGGGCAGATGGCTGGAGCAGATAGCCAAGAGTAAAACGTCTGAGGCTCTGTCCAAGCTGATGTCCTTACAGGCGACTGAGGCTACTGTTGTGACTCTGAATGGAGATACAATGGCCGTGTTAAGtgaggAGCAGGTGGATGTGGAGCTGGTACAGAGGGGTGATATAGTCAAAGTGGTTCCAGGAGGAAAGTTCCCAGTAGATGGGAGAGTCATTGAAGGACATTCAATGGCAGATGAGTCGCTCATCACAGGTGAAGCCATGCCAGTAACAAAGAAACCCGGGAGTACAGTGATCGCTGGTTCCATCAACCAGAACGGATCTCTGCTCATCCGAGCCACGCATGTAGGCACAGATACCACTCTCTCACAGATCGtcaaactggtggaggaggcgCAGACCTCAAAgGCTCCTATTCAGCAGTTTGCAGATAGGATCAGTGGCTACTTCGTCCCCTTTATAGTAGCGGTCTCCGTCCTCACCCTCCTCGCCTGGATAGCGATTGGATTTGTAAACTTCCGTCTGGTGGAGATGTACTTCCCTGGCTATGATAAGAGTGTGTCTCAGGCAGAGGCCATCATTCGCTTCGCCTTCCAGGCCTCCATTACAGTGCTGTGCATCGCCTGCCCCTGCTCTCTGGGTCTGGCAACTCCCACAGCAGTGATGGTGGGTACAGGAGTCGGAGCTCAGAACGGAATTCTTATCAAAGGAGGCGAGCCTCTAGAAATGGCCCATAGGattcAGTCTGTGGTTTTTGATAAAACTGGCACCATCACATATGGAGCTCCTAAGGTGGTGCAGGTGAAGATTTTGGTGGAGGGAAACCGAATGCCTCGCTCCAAACTTCTGGCCATTGTTGGCACGGCGGAGAACAACAGCGAGCATCCACTCGGGGCAGCAATCACCCGCTTCTGTAAACAGGAGCTGGGCACAGAGATGCTGGGCACCTGCACAGATTTccaggctgtgccaggctgtggCATCAGGTGTCATGTGAGCAACACTGAGAACCTGGTAAAGAGGGAGGACAGTGATGGGGAGGAGAACCAGCGCAATGCCATCCTGGTGCAGATCAGTGACCCCAGAGCCAGTTCCAACGCACATCCCCTCATTATGGACCCGGAGCCACTCACTCTGGTCCAGTCAGCCTCGTACACAGTGCTGATTGGGAACAGGGAGTGGATGAGACGCAATGCTCTGCACATTCGGCCTGATGTGGACGAGGCCATGACGGAACACGAGAGGAGGGGCCGCACTGCTGTACTTGTTGCTGTGGACGGTGAGCTGTGTGCCATGGTTGCTATAGCGGATACAGTAAAGCCGGAGGCTGAGCTAGCTGTTCACACTCTTACCTCCATGGGTCTGGAAGTGGTGCTGATGACCGGCGACAACAGCAAAACTGCACGAGCCATCGCTGCACAGGTTGGCATCAGGAAGGTGTTTGCGGAAGTGCTGCCCTCTCACAAGGTGGCTAAAGTAGAGCAGCTGCAGCAGGCTGGGAAGCGGGTGGCCATGGTGGGCGATGGAGTGAACGACTCTCCTGCACTAGCAATGGCAGACGTGGGCATCGCCATCGGCACAGGCACTGATGTGGCTATTGAAGCAGCTGACGTTGTGCTAATCAGGAATGATCTTCTTGATGTTGTTGCGAGCATTGATCTCTCAAAAAAGACAGTCAAGCGGATCCGTATAAACTTTGTATTTGCACTAATCTACAATCTTGTGGGAATTCCTATTGCAGCGGGTGTTTTTATGCCAATAGGTCTGGTGCTGCAGCCCTGGATGGGCTCTGCTGCCATGGCAGCCTCTTCAGTCTCTGTGGTCCTCTCCTCCCTGCTGCTCAAATGTTACAACAAACCCAGTGCGGAGAAGCTGGAGCTGCAGCTAGCCGGGCTTCGCAGGCAGGGCAGCCTATCAGACGTCAGCGTTCACATCGGCATGGGGGAGCTGCGGCGCCAGTCGCCCAAACTGAGCCTGCTGGACAGACTGGTCAACTACAGCCGAGCCTCCATCAACTCCCTGCGCTCGGACAAGCACTCGCTCAACAGCATGGCCCTGAGCGAGCCCGATAAACACTCGCTGCTCATCGCCGGAGCCCACTGTGAGGAGGAGATGGTctgagggggcggggctccgaGCAGCAGTGCTCCAATGATTCATCAACAGGAGCTGCATGGCTTCTTTTCACACCTCAGTGCCTGCAGAGCAGTGGAGAGACCAAAGCTCAGTCCCTGGAGTCTCATCCCCAGATCTCATCCACCTGCCCACCTGTCCTGTCCACCATATCCGCCAGTACCACTGCGCCAGCCAGTCCCTCCCAAGGCCTGGTGGGAGCTGGGAGGTCGGGGGTTGTGAGGCTGTGGAGAATATGCGAGAATATCAGTGTCTTTTTCGTCTTCTCAGtgcaaatttaatttatttgcgtCGCTCAAGCATTAGAGAAGCGTGTGTGAGCGCATGTGCAATGGTCACGTGGCTGTTTTGTAATGACAATCTACTACTTACCGACCAAAAGAAATGGGACGTGCCGTGGGCTGATACGGAAATCTTGTAGTCTTTTATTTCtgtggagagagaaaaatgacttcgtttattattctgttttagGATTGTAATGGAAAGTATATTTATGATATcctttatttatactttatcaTGTTAGTAATGGAACAAAGGATGTTATTAAgagatattattataattttattatttatccaAATATTTTCCACTTCCTTTCTCTCCGTACTTGAATGGGAGTGATGTAGTACAGTAGGAAATGAGAGAATTGCCTAGAGTATCAATCAATCAGTAGAATAATAGCTACAGTAagtaattaaaacacacacacacacatacatacacacatacagtagttACACTTGCCATTGCCAGGGTTCTTAACCTGGTGCTCTCTATCGCTCATTCACCATTGGGacttttataataaattatctgacaaaaaaacaaacaaaaaaaacattccaaagAAAGCATCCTGCCTCACGTCTTACATCTCAGAGGAGGAAGCGGAGGTTCTGGACACAGAGCAAGAGATAGCCTGGATAATTAGCATGGAAAAAATATCCTGCAAGTCCTGCAAGGGTTCTCTCTTGAGCATTTATGTGCACACGCGGAACGTGGACCTCTCTGATGAGCCGATTGATGCAGGAGAAGAGTGAAAACAAATATATCTTGATGTTTAGAGCTGATATTTAGTGGATTTCCATCAGCTATGCCTTCCAGTTCAGCGGGTCagctgtaaatgtgtaaatgacaatatggcAGCATCAATATAGCAATCTCAAGTGCTTCAGACATTCTTAAGGTTGCTTTCTAAGTGTTTTGGCAACATAGTGCATCAGAACACAGATAGGTCTAAGAGAGTGGTCAGAAAGAAAATCTGACTTACTTGTTTGTGCTGGTGCCAATttgtgaagaaagaaaaagtaatgAAACTTAAGATTCTTAAGATTCAGACCCCttccacactttttttttttttttttaagaaaattgattttctgcattttttttttattattattttcttttcaattcacacaaaattaaaaatgcttGTATGAGCAGACTACCCCTGTATGGGCTGACAGTACCGCTAAAAAGAGAGATCAACACACCATGAAAAAAGTAGAAAATGTTCATAATATAACAGTATTACATTTATTCAAATGTGTAAATCTGACATCTATTTTTATCTGTATGTAGGCACTTTAATTTTATGACTTATATCATTCATTATTTAAAGAGTTAGGAGACTTTTGAGATTCAGCCAGAAACATGCTTGCATGCATTATGACGTCAGCATTTTCATAAACCTCTCTTTTCCCTCTCCACTCGATAATGCTGAAAACTGAGTTATAAAGATATCTCCACTTTGAAAAGGGCATTATCaaaaagctctgtttttagTATGTGGATAAACTCTCCTCactaaataatgacttactgatTACTTggtgatcacacacacacactaaagaggCTGACTGGGAGCATTGTGAAAGACAGATAAGAAATGTATAAGATACTTATGACATTGTCAAAAGCTAAATATGATGTGTTTTGTGGTGTTGTAATGGATAAATGAGAGGAAACTGGCGAGACACAAAGGGGGTTATGTGACATAAAACACTAATAAGCCATAAATAGCTTTTAAATCACTCAGCCAAAGACGCTGGCATGATCACTGCTTAAATGAACTCAGTTgacttaatttatattataataatttgaaTTTGTTGGACTTGGAGAATGCAGGCTCTCAAAGTTCACTGTGTAGACAGTGTAACCTAACAGGTGGCTCTACTGTACCACTCTGAGGTAAAATTGTCTGCAGGAGAGCTAGTTCTACACTGCTaggcccaatcctatttcaccCACCatgtacccctaccccttcttttctaGTGTAACCCTTCCCATTGGAACAGAGTTAGAAGGGAAGGGAGTGAAATCCTCTACCTAATAATTGGGACAACCATTCAAGCCCCCGATAGATACATCAGCAGGAGTGCTAAAGTTAAAGCATTTTAGCAttatatgtcttcagaaagtggGGAGATGgtacagaaattaattattattgtccatttcttaattcctctgtgatggggagctgaaattagctttgattagcttttatttatttaatttttccatttccattttcaccatttaaggtggaactggaaagttagctagctagctatctagcttcTAATACAAACTAAGACAAAGTGATCTTTTtcatgcttgttatgaagaattcggccataaaacattgaaaccacacattaaactatggcaatatagtgctaatcgtcacttttaacaaggaaaatacttacatttgtgggcTTCTAACCAGGGATTCTTATACCCCTcagtttgaagtgtgcatctgaaaaatctctgtatgaagggCTTACAAGCCCTATCTGTTTCCCTAACCTACCCCTTCAGCCTAAAGAAAATAAGGACATCCCTACCCCTCGGCGTGCACACTCAAATCAGAGGGGTAGGGCCAATGGGTGAAATGAGATTGGGCCCTGGACTTGTAGACCTCTGGGAATTGTTCCTCATTTGGCTAGAACTGTTTTAATTGATGGGACACTGTTAGGCAGTTGTGCCACTTAGTAGCcctgacttatttatttacattaaatattagcATAGTTAGCATTTAGCATATTCAGTTATTCTGTTCCTTTTCATTTCTCTTAGTAAAGGATTTTAGGGCATTTAGTGTTAAGCtcacatacactatatacacactatatgtccaaatgtttgtggacaccaaatgcacacatgcacacacagaatGTTTAGTCACTGTagagtattgccaatagaaaagGACTCTCTGGAGAAGATTAACATGAACCTACTGGCACTTTGCCTAaagaagcagtggaactgtgttctctgaagtgatggagctccattcagTAATATTGGGATGAGTTGTAGGGGAGTTGGGATGgggatcatccaacatccagaCCTTACTAACCTTAAACCCATCATATCCAGAACCAAGCGTCAGTTAGagtagtggaactgtgttctctgaaatgatagagctccatccagtacatTGTGAGTAGGATAAGTGGGGGTGGTAGAACTAATTCAACATCAGAACCTACCTGACATCAGTGATGCTCTTGTtttggctgaatgcaatcaaatcctgacAGCCATGTTTCAGCATCTATGTGGATGATACATTAGCAAATTTATCAGTCTACAGGACTTGTCTCCAAAATGCATCAGGCTTGTTTAGATGCTTCTTTGAAAACGTCTTTATTGGCTGTTCCATGAAGGTCATATTCGTGCAGGTATCACTGCACGgtagaacagtgcaccaccaCCACTCCTGAGTCTACTAAACCTTCCTGAAGGTCTTATAAAGTCACACAGGTTAGAGTTCCACTGTGTAGCAATTTAGTTTGTGAGTATTTAGTTTGTAAAGTACCGAATACATTGATTTGATTTCAGAGAAACCCTGAagtcacacatacacactttgtGAAGTATATAGAGAACTTCTCAAGTACAAGCTTTAAGCTATATTGGCTGCAGTGTGTAAGAAGCAAGTCTATTTTATGAGGTCTCTCAGCCCTACAGTGCGTATTCTCTCCACTCGCTCATTGTCTCCGAACCTTTCCTTCAGAATCGGATGAGTATTGATGGCGGACTTTCCTCTGGGATATGTGCCTTTGTTAAAAAACAATGACCTCGTGAAACGCGGCCGCTCCTCACAGCGCCGTGTTCTCACATTACCCtgtgtgaagaagaagaaggagaaaatgGGAGTTAGAAGAGGGGAAGCGGTGTTACTGTGCCTTTTATACTGTGTTCACTGTTTTGAAGGATTTTTTGGAAGGCCACAGAGGAGCAGGTTTACTGAAGTAGGCCTCCCTCCTTCTGCAGAGTCAATGCATTTATGAGTTAGTCTACCGTGGCTTCACTGCACTCGGCTGTTATTTATTGCTCTTCTTGccgtgtatgtgtttgtattttCGTATGCTGAAGTCTGACTGAAgctgtgtgttttatagttgTAATGCAACAATCTTTCAATAAACTGCAGCTTATCAGCTtca

Function

GO:

id name namespace
GO:0046688 response to copper ion biological_process
GO:0006825 copper ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005507 copper ion binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function

KEGG:

id description
K17686 copA, ctpA, ATP7; P-type Cu+ transporter

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96347 lncRNA upstream 20376 5409031 ~ 5410313 (+) True G71411
TU96348 lncRNA upstream 20666 5409031 ~ 5410023 (+) False G71411
TU96333 lncRNA upstream 105802 5323669 ~ 5324887 (+) True G71397
TU96198 lncRNA upstream 132368 5295678 ~ 5298321 (+) True G71304
TU96186 lncRNA upstream 223612 5205216 ~ 5207077 (+) True G71294
TU96416 lncRNA downstream 51565 5527996 ~ 5532969 (+) True G71473
TU96417 lncRNA downstream 52024 5528455 ~ 5532295 (+) True G71474
TU96438 lncRNA downstream 126689 5603120 ~ 5603321 (+) True G71489
TU96439 lncRNA downstream 131287 5607718 ~ 5607946 (+) True G71490
TU96445 lncRNA downstream 198370 5674801 ~ 5678827 (+) False LOC103037414
XM_022671997.1 mRNA upstream 22674 5339650 ~ 5408015 (+) True atp10b
XM_022671995.1 mRNA upstream 117031 5182599 ~ 5313658 (+) True gabrb2
XM_022671996.1 mRNA upstream 118699 5182503 ~ 5311990 (+) False gabrb2
XM_007253630.3 mRNA upstream 257433 5143765 ~ 5173256 (+) True gabra6
XM_007253631.3 mRNA upstream 300132 5123954 ~ 5130557 (+) True ccng1
XM_007253628.3 mRNA downstream 3957 5480388 ~ 5485164 (+) True LOC103038898
XM_007253644.3 mRNA downstream 14991 5491422 ~ 5494564 (+) True LOC103044251
XM_015606961.2 mRNA downstream 196287 5672718 ~ 5678874 (+) True LOC103037414
XM_015606960.2 mRNA downstream 196301 5672732 ~ 5678874 (+) False LOC103037414
XM_007253622.3 mRNA downstream 220488 5696919 ~ 5731315 (+) True LOC103037091
LOC111193046 other upstream 450667 4979467 ~ 4980022 (+) True LOC111193046
TU96113 other upstream 450678 4956298 ~ 4980011 (+) True G71247
TU96114 other upstream 450678 4956298 ~ 4980011 (+) False G71247
TU96122 other upstream 462782 4963702 ~ 4967907 (+) True G71249
LOC111193076 other upstream 473663 4956279 ~ 4957026 (+) True LOC111193076
TU96351 other downstream 23477 5499908 ~ 5505638 (+) True G71414
trnaa-agc_14 other downstream 560371 6036802 ~ 6036874 (+) True trnaa-agc_14
trnaa-agc_15 other downstream 561245 6037676 ~ 6037748 (+) True trnaa-agc_15
TU96736 other downstream 1049210 6525641 ~ 6538794 (+) True G71682
TU96877 other downstream 1405156 6881587 ~ 6885541 (+) True G71788

Expression Profile