RNA id: XM_022672003.1


Basic Information

Item Value
RNA id XM_022672003.1
length 2877
RNA type mRNA
GC content 0.54
exon number 12
gene id trpc3
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5531871 ~ 5596025 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGGAGAACGGCGGTGTGGATGCACATTACCTGAAGAGCGGGAAACCGGCGGGGGACGCGGCGCGAGGATACCGGTACAACATGAAGACACTGGACACCTTCCCCGGCCGGAGGATGACCCTGCAGCGGGAAAAAGGTCGCAGGCAGGCTGTCCGCGGTCCGGCGTTCATGTTCAACGCTCGTGGGAGCAGCCTGACCGCCGAAGAGGAACGCTTTCTCGACGCTGCGGAGTACGGCAACATCCCGGTGGTCCGCAAGATGCTGGAAGAGTCGGCCACCCTCAACGTGAACTGCGTGGACTACATGGGGCAGAACGGACTGCAGCTCGCCGTGGGGAACGAGCACCTGGAGGTGACCGAGCTGCTCCTGCGGAGAGAAAACCTGGCGCGAGTGGGCGACGCCCTTCTGCTGGCCATTTCCAAGGGTTACATACGCATCGTAGAGGCCCTGCTGGGTCACCCTTCGCTGGCGGGCGGAGAGCGTCTCACCCGCAGCCCCTGCGAGCTGCAGGACGACGACTTCTACTCGTACGACGAGGACGGCACTCGCTTCTCGCCCGACATCACGCCCATCATCTTGGCCGCCCACTGCCAGAAGTACGAGGTCGTGCACATGCTGCTGCTGAAGGGGGCGCGCATCGAGCGGCCGCACGACTACTTCTGCAAGTGCGCCGACTGCACGGAGAAGCAGAGGAAGGACTCCTTCAGCCACTCCCGCTCCAGGATCAACGCTTACCGAGGCCTGGCCAGCCCCGCATACCTCTCGCTCTCCAGCGAAGACCCCGTCCTCACCGCCCTGGAGCTCAGCAATGAACTGGCAAAGCTGGCCAACATCGAGAAGGAGTTTAAGGATAAAAAGAGGCATAAAAAAGAGACGACGCAGCACAATTGCTTCTCTCTgaATGACTACAGGAAGTTGTCGATGCAGTGTAAGGACTTTGTGGTGGGGGTGTTGGACTTGTGTCGGGACACGGAGGAGGTGGAGGCCATTCTGAATGGAGATATATcagcagagctggaggagggcCAGCATCACCGCTCTCTGCTGAGCAGAGTCAAACTGGCCATTAAATACGAAGTCAAGAAGTTTGTGGCTCATCCTAACTGCCAGCAGCAGCTGCTGACGATCTGGTATGAGAACCTGTCAGGCCTGCGGGAGCAGACCATCGCTGTGAAGTGtctggtggtgctggtggtggctCTAGGACTCCCTCTGCTAGCTGTGGGCTACTGGTTCGCTCCATGCAGTAAGCTGGGGAAAGTCCTGCGCAGCCCCTTCATGAAGTTTGTGGCCCACGCTGCGTCCTTCATCATCTTCCTCTGCCTGCTCATCTTCAACGCGTCTGACCGCTTTGAGGGCATCACCACTCTACCCAACGTCACGGTCACGGACTACCCGCTCCAGATCTTCAGGGTGAAGACCACTCGCTTCACATGGACTGAGATTCTCATCATGGTGTGGGTGGCAGGCATGATGTGGTCTGAGTGTAAAGAACTGTGGACGGAGGGACCCAGGGAGTACATCCTGCAGCTGTGGAACGTCCTGGACTTCGGCATGCTCTCCATCTTCATCGCTGCGTTCACCGCCCGCTTCCTCGCCTTCCTGCAGGCCATGAAGGCCCAAGAGTACGTCAACGAGAACATCCAAGCCCCTGACCTGTCTCTGGTCACGCTGCCCCCCGACATCAAGTACTTCACATacgCAAGGGACAAGTGGCTTCCCTCGGACCCCCAGCTCATCTCAGAGGGGTTATATGCCATTGCAGTGGTCCTCAGCTTCTCTCGCATCGCCTACATCCTCCCGGCCAACGAAAGCTTCGGGCCGCTGCAGATTTCCCTGGGGCGCACCGTTAAGGACATCTTCAAGTTCATGGTGCTGTTCATCATGGTCTTCCTGGCGTTCATGATCGGCATGTTTATCCTGTACTCCTACTATCTGGGAGCCAAGGTTAACCCCGCCTTCACCACagTTGAGGAGAGTTTTAAAACTCTGTTTTGGTCTATATTCGGCCTGTCTGAAGTCTCCTCAGTGGTACTAAAGTATGACCACAAGTTCATTGAGAACATCGGTTATGTTCTGTATGGGATCTATAACGTTACCATGGTTGTGGTTCTGCTCAACATGCTCATCGCTATGATTAACAGCTCCTACCAGGAGATCGAGGATGATGCAGATGTGGAGTGGAAGTTTGCCAGGTCTAAACTCTGGCTGTCGTATTTTGATAACGGTAAAACCCTGCCGCCTCCCTTCAGCATCGTCCCCAGCCCAAAGTCCTTCGTCCACTGCATCAGCAAACTCATCAGCCTGCTGcgctgccgccgccgccgccgcctcAACAAGGACGTGGAGCTCGGCATGGACAACTCCAAATCCAGACAAATAATGAAGCGGCTCATTAAGCGCTACGTCCTGAAAGCACAAGTGGACAAAGAGAATGATGAAGTTAACGAAGGTGAGCTGAAGGAGATAAAGCAGGATATCTCCAGTCTGCGCTACGAGCTGTTGGAGGAGAAGTCTCAGGCTACAGAGGAGCTCTCCATGCTCATCCAGAAACTCAGCGAAAAAGTCAACCTGGGTCCTGTTCATGCTCCATAAACTGACCCCGTCTCACATCTGTAAACACAGACATATCAAGCAGCCCTTAACATTACATTAGCACAGGGGTTTAGTTCAGTGTCATTTATTACTCTGCACAGTAAATATGaagagcactttttaaattatgatttcatttattaagggaacaaaaactatccaaacccatctagccctgtgtgaaagaATATTTGACCCCTCAtagattaactgtgattaatcacatttgttggaaagctgagttcaattttactactaaccacaaccaggcctgattactgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96415 lncRNA downstream 3997 5527659 ~ 5527874 (-) True G71472
TU96407 lncRNA downstream 39930 5490363 ~ 5491941 (-) True G71464
TU96332 lncRNA downstream 208229 5323344 ~ 5323642 (-) True G71396
TU96295 lncRNA downstream 301057 5156618 ~ 5230814 (-) True G71361
TU96253 lncRNA downstream 442410 5082173 ~ 5089461 (-) False G71328
TU96437 lncRNA upstream 3767 5599714 ~ 5599952 (-) True G71488
TU96448 lncRNA upstream 46943 5642890 ~ 5678873 (-) True G71496
TU96453 lncRNA upstream 83858 5679805 ~ 5680110 (-) True G71501
TU96531 lncRNA upstream 270358 5866305 ~ 5866528 (-) True G71554
TU96568 lncRNA upstream 358673 5954620 ~ 5967921 (-) True G71577
XM_007253626.2 mRNA downstream 20142 5500015 ~ 5511729 (-) True gstp1
XM_022671998.1 mRNA downstream 108989 5411716 ~ 5422882 (-) True LOC103044536
XM_007253632.3 mRNA downstream 394258 5130602 ~ 5137613 (-) True nudcd2
XM_022671991.1 mRNA downstream 485734 5014872 ~ 5046137 (-) True kdm1b
XM_022671990.1 mRNA downstream 518004 5003342 ~ 5013867 (-) False LOC103041488
XM_022672006.1 mRNA upstream 174840 5770787 ~ 5800724 (-) False LOC103036182
XM_007253618.3 mRNA upstream 174840 5770787 ~ 5798674 (-) True LOC103036182
XM_022672007.1 mRNA upstream 174840 5770787 ~ 5796092 (-) False LOC103036182
XM_007253619.3 mRNA upstream 174840 5770787 ~ 5796092 (-) False LOC103036182
XM_007253616.3 mRNA upstream 234142 5830089 ~ 5841707 (-) False LOC103035656
TU96400 other downstream 55496 5471666 ~ 5476375 (-) True G71458
trnaw-cca_42 other downstream 607800 4924000 ~ 4924071 (-) True trnaw-cca_42
TU96095 other downstream 647383 4882170 ~ 4884488 (-) True G71235
TU96020 other downstream 1118860 4411948 ~ 4413011 (-) True G71175
TU95798 other downstream 1724772 3769161 ~ 3807099 (-) False LOC103042226
TU96529 other upstream 233674 5829621 ~ 5841687 (-) True LOC103035656
TU96859 other upstream 1181292 6777239 ~ 6824756 (-) True G71771
TU96917 other upstream 1461163 7057110 ~ 7057643 (-) True G71826
TU96981 other upstream 1713828 7309775 ~ 7312926 (-) True G71862
TU97555 other upstream 3043591 8639538 ~ 8645601 (-) True G72336

Expression Profile