RNA id: XM_022672008.1


Basic Information

Item Value
RNA id XM_022672008.1
length 1917
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC103035351
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5844641 ~ 5859370 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGTGATCCggcatctgctgctgctgttgcggGAGGAAGAGCCGCTTTACTCTCTCTGTGCTTTTTAGCCGAGCTGCCCCTTTCAGTTTCGCCTTGAGAAAAAGACGTTTTCTCCCCGTATCGACCGGCTCCATCAGGCCGCCTTGATCCGAGGGACTGTCAGGTTTAGGTTGCGAGGTGGTCGGTGTCGGTTTAGAGGGAACCAGTCGGCGTTTTGGCCTTTTTAAATCGAGCGTAGTTCGGTTTCGGTGACAGCAGCACAGGAACAACAATGGCTCTGAAGAGAATTCATAAGGAACTGCACGACTTGGGCCGTGACCCACCTGCTCAGTGCTCAGCAGGGCCAGTAGGGGATGACATGTTTCACTGGCAGGCCACAATAATGGGACCAAATGACAGTCCTTACCAGGGTGGGGTGTTCTTCTTGACCATTCACTTTCCCACAGATTACCCCTTCAAACCGCCAAAGgttgcaTTCACCACAAGAATCTACCACCCAAATATCAACAGCAATGGCAGCATCTGTCTGGATATTCTAAGGTCTCAGTGGTCACCTGCCCTCACCATCTCCAAAGTACTCTTGTCAATCTGCTCTCTGCTGTGCGACCCCAATCCGGATGACCCCTTAGTACCCGAGATTGCCCGCATCTACAAGACTGACAGGGAAAAGTACAACAGAATAGCTCGGGAATGGACACAAAAGTATGCAATGTAGTTTTGGAGTTAGAATCATGGCGGGAAAAAAATTTACACCTCTCCATCTTAAGGTTAGGGGAGATTTGAAAGtttaagagataaaaaaaaaaaaaaaaagctaaagaaaaaaaaacagatcttgTTGGTTTCCATTGGAGTGCTTTCTTTAAGCCACGCCTCCCCTCACCAGAGCACCTCCCCCCCACTCCCCACCTTACCCCACCCTCCTGGTAGCCATGGTGTACATACTTTCAAACTTCGACTGTAGCTCAAATCCAGCTGTTTTCCCTCCACCCCACCAACTCCCCCACccgaaaacaaacaaacgaaaaaTCTTCGCTCCATGTCTCTTGCTTTACCGTCTCCGTCGCAGCAATGGTGACGTGCCTGCTGCTTAGGGTCAGCCAGTCTCAATTTTTGCAGTTGAAAATCTTCATGACTCTAAAAGCATTCCTTGTTTTTAAGCACTGGGGAGGGAGGgaaattctttttctttttgtttttcttttttttcttatctccCCTGTTTTGTGATTATAGTGGAAATTGAGGGATACgttctttacatttttccatttattcCGTTTCCTGGGCTTCCAGATGTATCTTGGATCAGGAAaagggtttattttttttatttttattttttgttttgttccttTCTATTGACTGAGGGGGGAGGGGTGTATGCTGGCTATCTTTTGTATAAAATCTATAAGGAATTCTTTTAAAATCATAGCAGGTTTATTAATGGCAAAATGTCGGACCTTTGGGTCCTCTCTTCTGGATCATTCTAAAGGACTTGAATACTATGAATATAagttactttttgtttttccatttgCCATAACCAAGACTGTCTTTACCCCTTCCCTTAGCCACGACCAATTCAGCATCATTCTCACTGTTCTCGAGAATTTTGGACCAGTTATTTAAAGCAGAATCTTAGTTAAGCACGTGTTATGagtttacttttttgttgtttttcttctccTGCCCCCCCCAATAACTCTTAGTTCCATTttagctgcattttttttgtttcccctCTGCTCTTGTTGAAATTAGATGCTAACATGGCTGAGACAGACTCGATTGGGTCCCCGGGTGAGAGGACACAACTCCTCACAGACAAActtctgtatatttaatttccTGACAGGCTCGTTGAGCTTTGTGTGTTGATTAAAACTGTGTAATAAAATGATTACTAAAGTCTGA

Function

GO:

id name namespace
GO:0061418 regulation of transcription from RNA polymerase II promoter in response to hypoxia biological_process
GO:0035666 TRIF-dependent toll-like receptor signaling pathway biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0034138 toll-like receptor 3 signaling pathway biological_process
GO:0034142 toll-like receptor 4 signaling pathway biological_process
GO:0005829 cytosol cellular_component
GO:0000151 ubiquitin ligase complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K06689 UBE2D, UBC4, UBC5; ubiquitin-conjugating enzyme E2 D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96453 lncRNA downstream 164531 5679805 ~ 5680110 (-) True G71501
TU96448 lncRNA downstream 165768 5642890 ~ 5678873 (-) True G71496
TU96437 lncRNA downstream 244689 5599714 ~ 5599952 (-) True G71488
TU96415 lncRNA downstream 316767 5527659 ~ 5527874 (-) True G71472
TU96407 lncRNA downstream 352700 5490363 ~ 5491941 (-) True G71464
TU96531 lncRNA upstream 6935 5866305 ~ 5866528 (-) True G71554
TU96568 lncRNA upstream 95250 5954620 ~ 5967921 (-) True G71577
TU96623 lncRNA upstream 227469 6086839 ~ 6087111 (-) True G71612
TU96669 lncRNA upstream 294521 6153891 ~ 6178020 (-) True G71636
TU96681 lncRNA upstream 412881 6272251 ~ 6288998 (-) False G71644
XM_007253616.3 mRNA downstream 2934 5830089 ~ 5841707 (-) False LOC103035656
XM_007253617.3 mRNA downstream 2957 5830089 ~ 5841684 (-) False LOC103035656
XM_022672006.1 mRNA downstream 43917 5770787 ~ 5800724 (-) False LOC103036182
XM_007253618.3 mRNA downstream 45967 5770787 ~ 5798674 (-) True LOC103036182
XM_022672007.1 mRNA downstream 48549 5770787 ~ 5796092 (-) False LOC103036182
XM_022671905.1 mRNA upstream 152849 6012219 ~ 6036754 (-) True LOC103032061
XM_022672013.1 mRNA upstream 302285 6161655 ~ 6221853 (-) True LOC103043333
XM_007253597.3 mRNA upstream 434314 6293684 ~ 6315841 (-) True hars
XM_007253598.3 mRNA upstream 434314 6293684 ~ 6315832 (-) False hars
XM_022672025.1 mRNA upstream 662687 6522057 ~ 6538782 (-) True LOC103036141
TU96529 other downstream 2954 5829621 ~ 5841687 (-) True LOC103035656
TU96400 other downstream 368266 5471666 ~ 5476375 (-) True G71458
trnaw-cca_42 other downstream 920570 4924000 ~ 4924071 (-) True trnaw-cca_42
TU96095 other downstream 960153 4882170 ~ 4884488 (-) True G71235
TU96020 other downstream 1431630 4411948 ~ 4413011 (-) True G71175
TU96859 other upstream 917869 6777239 ~ 6824756 (-) True G71771
TU96917 other upstream 1197740 7057110 ~ 7057643 (-) True G71826
TU96981 other upstream 1450405 7309775 ~ 7312926 (-) True G71862
TU97555 other upstream 2780168 8639538 ~ 8645601 (-) True G72336
TU97699 other upstream 3306508 9165878 ~ 9174309 (-) True G72449

Expression Profile