RNA id: XM_022672012.1


Basic Information

Item Value
RNA id XM_022672012.1
length 1718
RNA type mRNA
GC content 0.52
exon number 7
gene id tmem173
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5962280 ~ 5987766 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtgtgtgtgtgtgtgagagtgtgactAAGTCTAAGCGTATGGGGAGAGGAGAGGGTAGGCGAAGAATAGCTCCTGATACTGAGAGAGACTAAGAGATagaagtagaaagagagagagatagagagagaggaaagacaGTATAGGAGAGAGAAACCGTGAGGAAGTGAAGACAAAAAGCAAGATAATAAAAGATAAGGAAGGAAAGCAGAAGGCAGAGCTGGTGTATAGTCCGCTGAATTACTTTTTAGACTTCTGATAAGCACAGCTGCAGACTCATCCGTCCTCCCGTGATCTGAGACAGTGGTGCTGATGGGGGATGAGAGCGTGGTCCCGAGGCCTCGGGGGTGGGCTCCGGCTGTGTGTGCGGTGGGTTTGAGTCTCACAGCTCTGGCGCTGGTCAGCCTGGTGGACCCCAGCTCTATTAGAGGAGCGTGTGAACTGGCTGCGCTGTCTCTGAGTCTGGGCGCTCTGCTGCACAGCCTGTGTCTGCTTACAGAGGAGTGGCTGTTCCATTCACAACAAAGgtaTGGTGGGAGCTTCAAGCGGATTCTTCAGGCCTGTTTCAGCAGGGCTAAtgttggtggtgtgtgtgtggtgtttctgATGCTGCTGATGGGAGGCTTCAGTTACTCACCTCAGCAATGGGCTTTGGTGGTCCTAACCAGCTCTTTATACACTCTGTTCAAGACCATCGGAGTGCTGGGTCCTGCTCCAGTGGAGATTTCTGAGGTGTCTGAGAGCAGGAAGATGGATGTGGCTCATGGCCTGGCCTGGTCCATCTACCTGGGCTACCTGAAGCTTGTGCTGCCAGAGCTGGAGGGGCAGGTGAAGAAGCACTGTAACGAGACCAGAGAGGTGCTGAACTCCGCCCGGCTCCACATCCTGCTGCCTCTGAGTGCAGCAGCTACAGCCAGGCTGGAGGAGGTGGACCGTAATGTGCAGTACCACAAAAACCTGCCTGACCTGCAGCTGGACCGGGCTGGGGTCAGAGGCAGAGTCTACAAACACAGCATCTACAAAATCACCGACCAGAACCAAAAGgattattactgtgtgGCGGAGTACGCCACCCCTCTGCTGACTCTGTATCAGATGTCTCAGGATGGCATTGCAGGGTTCAGTGCATGGGACAGGAGGCAGCAGGTCCTGCTCTTCTACAACACCCTCACTCACATCCTGGAGAGTTCTCTAGAGTGCCGCAACCGCTATCGCCTCATTCTCCTGGAAGATGATCAGGCTGCTGAACCTCATTACCTGTCCCAGGAGCTCATCAAAAACCTGCAGCAGGAGGAGCACGAGATCCCCATGGAACAGGGGCGTGAATTCCCCCGTCCCGTGGCAGAAGTGGGGCTGAAGAGAGCTCCCGTTCAGCACAACGGTGTTCAGGAGCAGCCGGCCTGCTCCATGCCCAGCCTGGAGATCAGCGGCCCCATGTCCCTGAGGTCTTTGCCTGAAGAGAACACAGACTACACCCATCACTGAAACAACACAGGCAGATAGAGCTGCTCTCAGCACAGTTtactgctaccaaaaaaagacTGTAGAAATGGATTGTAGAAATGGGGAATGTTCTCTAGTTTTGGTTTAAAAATCGACAACAATTGAGCTGTTGATTAAAATTCTGTAACAACAGCAGCCTGGAGTGGCAAGTTATTAGTAgttgtttgtttacttgttcACTTGtcttttcggtaccactttaaaataggaCTACCatt

Function

GO:

id name namespace
GO:0032606 type I interferon production biological_process
GO:0039528 cytoplasmic pattern recognition receptor signaling pathway in response to virus biological_process
GO:0002230 positive regulation of defense response to virus by host biological_process
GO:0005783 endoplasmic reticulum cellular_component

KEGG:

id description
K12654 TMEM173, MITA; transmembrane protein 173

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96537 lncRNA upstream 5261 5903400 ~ 5957019 (+) False LOC103043949
TU96473 lncRNA upstream 102916 5800403 ~ 5859364 (+) False G71518
TU96474 lncRNA upstream 102916 5844617 ~ 5859364 (+) True G71518
TU96492 lncRNA upstream 120577 5828888 ~ 5841703 (+) True G71528
TU96489 lncRNA upstream 133458 5824434 ~ 5828822 (+) True G71527
TU96550 lncRNA downstream 24456 6012222 ~ 6014382 (+) True G71566
TU96619 lncRNA downstream 44419 6032185 ~ 6036659 (+) True G71608
TU96622 lncRNA downstream 98808 6086574 ~ 6086987 (+) True G71611
TU96624 lncRNA downstream 166115 6153881 ~ 6157418 (+) True G71613
TU96648 lncRNA downstream 357468 6345234 ~ 6345715 (+) True G71628
XM_022672009.1 mRNA upstream 5265 5871090 ~ 5957015 (+) False LOC103043949
XM_022672011.1 mRNA upstream 5265 5871251 ~ 5957015 (+) True LOC103043949
XM_022672010.1 mRNA upstream 5265 5872593 ~ 5957015 (+) False LOC103043949
XM_007253622.3 mRNA upstream 230965 5696919 ~ 5731315 (+) True LOC103037091
XM_015606961.2 mRNA upstream 283406 5672718 ~ 5678874 (+) True LOC103037414
XM_007253601.3 mRNA downstream 20795 6008561 ~ 6011401 (+) True LOC103031741
XM_007253600.3 mRNA downstream 284450 6272216 ~ 6291384 (+) True LOC103031423
XM_022672014.1 mRNA downstream 330554 6318320 ~ 6344698 (+) True trappc11
XM_022672015.1 mRNA downstream 330564 6318330 ~ 6344698 (+) False trappc11
XM_007253596.3 mRNA downstream 365873 6353639 ~ 6372363 (+) True LOC103029834
TU96351 other upstream 456642 5499908 ~ 5505638 (+) True G71414
LOC111193046 other upstream 982258 4979467 ~ 4980022 (+) True LOC111193046
TU96113 other upstream 982269 4956298 ~ 4980011 (+) True G71247
trnaa-agc_14 other downstream 49036 6036802 ~ 6036874 (+) True trnaa-agc_14
trnaa-agc_15 other downstream 49910 6037676 ~ 6037748 (+) True trnaa-agc_15
TU96736 other downstream 537875 6525641 ~ 6538794 (+) True G71682
TU96877 other downstream 893821 6881587 ~ 6885541 (+) True G71788
TU97487 other downstream 3155133 9142899 ~ 9149419 (+) True G72281

Expression Profile