RNA id: XM_022672013.1


Basic Information

Item Value
RNA id XM_022672013.1
length 1979
RNA type mRNA
GC content 0.57
exon number 8
gene id LOC103043333
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6161655 ~ 6221853 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACGAGCGGGCACGCACAACTCAAGCCGGAGCGCGAGAGTTGCGCGAGCGGGCGCGCGGCTGCTTAATTATCTACCTTAATTTGCACGCGCTGATTTTAAGTTTAATTGCATTTGTATTATCATTAGATTcgtgtttttatttaaagtattttttttactaacacAAAAACAGCACCGGCTCGTGCAAGTTTGAATAAGGATTTTGGGTTTTCTAAGGATTTGGCTCCGTGCGCGCgagtgcgtttgtgtgtgtgagggaaggagactgagtgtgtgtgaagtgtgtgttgagagagagagaaagagaaaaagaggacaGAAGGGGGAACCTGGACCTTTCCACAGCAAGTCCAGCAGCAAGACCCTGGCCCAGTGTGGATGCATGTAGTGGACGCACGCGCGCCCGTGCGTAGGACTCAACCGCTGTCCAGAAGTGTCCAACTCCGCTCGCGCCACCTTCAGCATCCCAGCCCCGGGTGCCTCGAGCTCCGGGGGGTGACGGTCTCGACCATGATCTCTGTAGGAATACTCCTGAACCTGGTCTTCATTAGAGGTTCGCTGTCCTCAGTGGTTCCTCTGTTTCCGGGGACGCTGGACTGTGAGGAAGCCGTGCAGGAATGTATATCTGAGCCCAAGTGCGAGAGACTGTACAGGCAGCTGGATTACTGTGTGGACGAGGAGGCGGTGGCACCGCTGGGTCCTGACACCAGGCAGGCCTGCAGCGATGCCCAGAATGCCCTGCTGCACTACCACAACCTGCAGGAGTGCAAGTGCCAGCGCGGCTCACGCAGAGAGCTCGTCTGCCTCAGAGTCTACTGGACCGTCCGGTTCCCACAAGggTACGATGACATTGAGACGTCCCCTTATGAGGACATTGAACTGGAGCTGGTGAGAAATGCGGAAAACTCCAAACTGGCCTCAATCGTGGCAGTCTCCTCATTTTCTCTGGATGGACAGAACCGGTGTCTGAAGGCGGCGCAGGACTGCGGTCTGTTTGAGAAGTGCGGGGCGCTGCGCTCCGAGTACGTGCTGGCCTGCACTAAGCGCGCGGTGGGCTCGGAGCGCTGTAACCGGCAGAAGTGCCACAGGGCGCTGCGGCGGTTCCTGGAGCGCGTGCCGGAGGAGTACAGCTTCAGCCTGCTCTTCTGCTCCTGCACCGACCCGCTGtgtggagagaggaggaggaagaccATTGTCCCCTCCTGCTCCTACGAGGAGAGAGAAACTCAGCCCAACTGCCTCCACCTGGAGATCTACTGCCTGAGGGACGACCTCTGCAGGTCGAGACTGGCTGATTTCCAGCAGAACTGCCAGCCCTCCCCTCACTCACCCTCAGGCTGTCTGCGCGAGAGCGGCGCTGTGTGCCTGAAGGCCTACGCCGGACTGATCGgtACGATCATGACGCCAAACTATGTGAGTAACAGCAGTACGGAGGTGTCTCAGTGGTGTAACTGTGAAGGCAGTGGTAACCAGTGGCAGGACTGTCTGCGTATTCTCCACATGTTCAACAGCAACGCCTGCCTGCGTAATGCCATTGATAACATGGGGAGCTCTAACCCTCGGCCTGTGGAGGGCACGCCCCTGCCCCCGCCTCGTCCCTCCCCTCACCTCCAGCACGACGAACTCCACGTTAACCTGCTGTCAGACCTCAACTCGgtGGAGGAAAGTGAGGAGGAAAagcaggaagaggaagaggaggaggaggagcaggaagAGATGGAAGCAGCGGAGGAGTTCAACGTCATCCCTCCGTTCTCGGACAAGGCCACAGTCACTAACCTGGGCGGCTCAGAGACGGGCAGGGTCCACAGCCGGGCCTCCAGCACCCTGGCTCCAgcgccaatgctaatgctaatgctaatgctgcaacTGCTGCTACTAACTACCCTCAGCCGGGGGTAgacatcacacacatacacgtacataaacatatacatagacacaaaaacacactctttctcgcatatgtacacacacac

Function

GO:

id name namespace
GO:0014707 branchiomeric skeletal muscle development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96623 lncRNA downstream 74544 6086839 ~ 6087111 (-) True G71612
TU96568 lncRNA downstream 193734 5954620 ~ 5967921 (-) True G71577
TU96531 lncRNA downstream 295127 5866305 ~ 5866528 (-) True G71554
TU96453 lncRNA downstream 481545 5679805 ~ 5680110 (-) True G71501
TU96448 lncRNA downstream 482782 5642890 ~ 5678873 (-) True G71496
TU96681 lncRNA upstream 50398 6272251 ~ 6288998 (-) False G71644
TU96682 lncRNA upstream 50398 6272251 ~ 6291512 (-) True G71644
TU96690 lncRNA upstream 96376 6318229 ~ 6320682 (-) True G71646
TU96708 lncRNA upstream 127850 6349703 ~ 6350020 (-) True G71659
TU96717 lncRNA upstream 146903 6368756 ~ 6374213 (-) True G71665
XM_022671905.1 mRNA downstream 124901 6012219 ~ 6036754 (-) True LOC103032061
XM_022672008.1 mRNA downstream 302285 5844641 ~ 5859370 (-) True LOC103035351
XM_007253616.3 mRNA downstream 319948 5830089 ~ 5841707 (-) False LOC103035656
XM_007253617.3 mRNA downstream 319971 5830089 ~ 5841684 (-) False LOC103035656
XM_022672007.1 mRNA downstream 365563 5770787 ~ 5796092 (-) False LOC103036182
XM_007253597.3 mRNA upstream 71831 6293684 ~ 6315841 (-) True hars
XM_007253598.3 mRNA upstream 71831 6293684 ~ 6315832 (-) False hars
XM_022672025.1 mRNA upstream 300204 6522057 ~ 6538782 (-) True LOC103036141
XM_022672026.1 mRNA upstream 300204 6522057 ~ 6538781 (-) False LOC103036141
XM_007253587.2 mRNA upstream 348963 6570816 ~ 6583742 (-) True LOC103027842
TU96529 other downstream 319968 5829621 ~ 5841687 (-) True LOC103035656
TU96400 other downstream 685280 5471666 ~ 5476375 (-) True G71458
trnaw-cca_42 other downstream 1237584 4924000 ~ 4924071 (-) True trnaw-cca_42
TU96095 other downstream 1277167 4882170 ~ 4884488 (-) True G71235
TU96020 other downstream 1748644 4411948 ~ 4413011 (-) True G71175
TU96859 other upstream 555386 6777239 ~ 6824756 (-) True G71771
TU96917 other upstream 835257 7057110 ~ 7057643 (-) True G71826
TU96981 other upstream 1087922 7309775 ~ 7312926 (-) True G71862
TU97555 other upstream 2417685 8639538 ~ 8645601 (-) True G72336
TU97699 other upstream 2944025 9165878 ~ 9174309 (-) True G72449

Expression Profile