RNA id: XM_022672014.1


Basic Information

Item Value
RNA id XM_022672014.1
length 4302
RNA type mRNA
GC content 0.49
exon number 30
gene id trappc11
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6318320 ~ 6344698 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGGTAGCACATCGCGACACAACACCGGTGGCTGTGGCGGAGGGTCATGGGGTGTGGGCCCGGCTGCTCTGGGAGATAAACACGGATATTAATCAGGGTTTAATGTAAATGAAGTGGATGTAGACGGATTTAACAGACTGCAGCAGTAAAAGtttttttttagttccccTCTTGAACGGCCAGTTCTTGGTAAGATGAGTCCGACGCAGTGGGATCTCCCCCCAGAGCTGTGCTGCAGGCCAATGGCCTTCGTGGCTCTGACCGGTCTGGATGTGGTGTATAACGCAGTGCACAGAGCCATATGGGATGCTTTCTGTGCAAACAGGAGGGCAGACAGGGTGCCCATTTCCTTTAAAGTCCTGCCAGGTGACCACGAGTACCCGAAGTGTAGAACTAAGAGGACCTCCTACGAGTGGTACATTCCTAAAGGCATCCTGAAGACAGGCTGGATGAATAAACACCTGAACCTGGTGCCTTCTCTGGTGGTGCTGTTCTATGAGCTTGACTGGGACGATGCTCAGTGGAAGGAGAAGCAGTCGGAGTGTGCCACTAAAGTGGAAATTGTCAGAACAAGTCTGCAGGGGAGGAACACTAAGGTTGCAGTTGTTCTAATCCAGAAGAAGACTCCTCTTCCTCCAGGAGAGGATGTGGTGGCATCAGAGAGGGCTGCGGCTCTGTGTAATGCCTGCGATCTCTCTGGAAAATCCCTGTTTGTCCTCCCCCATACGGACCACCTAGTAGGATACATCATCAGGTTGGAGAATGCGTTTTATGAGCATGCTCAAACATATTACTATAATGAGATAAGGAGAGTGAAATCGCACAAAGAGTTCCTGAATAAAACGACTCATCAGCTGCTGTTTGTGAGGCACCAGTTTAAAACCGGTTTCTTCAGTGAGCTGAAGCAGGACACGCAGAATGCCCtcaaACACTACAGAACCGCCTACAGTCTTGTTCATGAGCTCAGAGCCCATGAGACCAACATGCTGGAGATCAAGACTTTGGCTGGCTTCATCAACtacaagATCTGTAGGCTCTGCTTCCAGCACAACACCCCTCTGGATGCCATCGCTCAGTTCAGGAAGCACATCGATCTGTGCAAGAAGAAGATTGGGAGTGCTGAGCTGGCCTTTGAGCACACCGCCTGGATGTCAAAACAatTCCAGTCATTTGGTGATCTGTTCGATGAGGCCATCAAACTGGGCCTCACGGCGATCCAGACGCAGAACCCTGGCTTTTATTACCAGCAGGCTGCCTGTTATGCCCAGGAGCGCAAACAGCAAGCCAACCAGCTCTGCAGCCATGAGcCTAATGTGAGTTACCCCACTCCTGACCCTGTGGAAACGGCTTCAGGAGCTCTGGACTTCTATGGACAGAGAGCATGGAGACAAGGCCACcagaGTATTGACCCACCTGACCCTGAAAAGGAGAAGCAGGGCATACTCGCTCTTCAGCTGAAGGAGAAAGATGTGCCTCATTCGGAGCTGATCATTGCtttactcagcaatgctgttgCACAGTTTAAGAAATACAAGTGTCCTCGTATGAAGAGCCatttgaTGGTTCAGATGGGAGAGGAGTACTACCACGCCAAAGACTACACCAAAGCTTTAAAATTGTTGGACTATGTTATGTGTGACTATCGGACTGAGCGCTGGTGGAGTCTCCTCACCTCTATCTTGTGTACGGCTCTAAAGTGCTCGTATTTGATGGGCCAAGTCAAAGACTACATTACCTACTCTATGGAGCTGGTGGGCAGAGCCTCTACTCTACGTGAAGATCAGAAATCCAGGATTGAGAAGAATCTGATCAGAGTGCTCATGAATGAGGTTCCGGAGGCGGAGCTGGACTGTGACCCAGGCTCAGTAAAGGCAGCTCAAGTGCTGTGGACGGATCGCGTCTCTCTGGGTGGCAGTAACGAGTTCACCGTTGAGGTTCAGGACTATGTGCCATTCATCCAGTGTAAGGCCAAGTTCCTGTCTCCCAGTTTCCACGTGGATGAGCCAGTGCAACTGCATGTTTATCTCAGGGCCGACTGCCCCCACCCCGTCCGCTTCGCCAAGCTGTGTGTCAGCCTCAGCAACCAGGAATATAATCAGTACTGCCTGGTGGAGGAGGCGTGCAAGGGGAAGGACATTCTGGAAGCTTCTTCTCAGGGGAACATGTGTCTGGTGCCCGGAAAGACCCGAAAATACTGTTTCAAATTTGTAGCCAGGACTGAGGATGTTGGCAGAAAGATAGAGATCACCAGTGTGGACCTGATGCTGGGCAGTGAGAATGGCCGGTGTGTGTATCTGAACTGGAGGGGTGGAGGTGGTGATGCTGCCTCTGCTCAGGAGGCTCTGCAGGCGTCACGCTCCTTTAAGAGGAGAACCCGTCTCCCAGAGCAACAGGTCGACTGGGACGCTGTTTCCATCCAATCCAGCACCATGGTCATATCCCGAGTTCCCCGAATTACTGTCCAGTTGCAGCATGAGCCACCAGCCCTGAGCAATGAGATGTACTGCATTACGgtcactgtccaatcagaagAAGACACGGTGGCCAAAGATGTTACTCTTACTGCTGGTCTCAAACCagGTCAGGATGCAAATCTCACCCAAACAACCCACGTCACACTGAACAGCTCAGAGGTGTGTGATGATGCTCATCCTGCCCTGCTAACTGATATCGCTGTTGGAGACTTGCAGCCAGGAcagaagATTGAGAAGAAGCTGTATATCCGCTGTGTCAGCACTGGATCCAGAATCTTCCTTTTCCACGTCTCTTACGCCATGAGCACCACAGTGGAGGGCAAAGACATCACATGCAGGTGTCACAAGGATGAAACCGTCACAATAGAGACCGTCATTCCATTTGAAGTAGCTGTCAAGTTTGTGTCCACTAAGtTTGAGCATCTGGACCGTGTTTATGTGGATGTGCCGTTCTTGCTGATGATGGACATTTTGAGTGCGTCTCCGTGGCCTGTGCATCTGGTCAGCAGTGAGCTCCAGCTGGCCTCCAGTATGGCCGCTGTTGATCAGCCTCAGAGTCAGGTGGAGGGAGTGGTACTGCAGACGGgcgagtgtgcgagtgagtgtttCAGTCTAAAATGCCCTCCGGTTCAGAATGGCACCAGCACAGTGGCAGCAGGACAGTACCTCATCTCCTGGAAGAGGAAATCTGTGTCTGCTGAGACGCCAGTGGTTAAAACAACTGTGATCCTCCCTCATATTATTGTAGAGACTATTCCTCTGTATGTCCATGCAGAGTTGCCCTCGTTTGGGCGTGTACGTGAGTCTCTCCCAGTGTGGTATCACATTGAGAACCGAACCGGAGTGGTTCAGGATGTGGACATATCTGTGGAGCCCAGTGATGCCTTCATGTTTTCCGGACTCAAGCAGGTACGCATGAGGATTCTGCCGGGTACGGAGCAGGAGATGGTGTATAATTTCTATCCCTTGATGGCTGGCTATCAGAACCTGCCTCTGCTGAATATCAACCTTCTTCGATTCCCCAATGTCTCCAGTCAGCTGCTGCGCCGCTTCCTCCCCACACGCATCTTCATTAAGccGCAGGGAAGAAATGGAGATGCCTCCATTGAAGCTGCCTGAGATTAGCTGCGTAAAAATGGTTTTATAATCTGATCTCAGAGCATTGGTTATCAAACGGATTTGGATAGTGCTTTGTTCTTCTGTCATTTTGAAAGAGGTTCCAGAAAACAAGTTCTGAGGTGTTTCAAACAAGCATAACTTTTCTGAAACCTGCATTTAAGAGTTGGTGTAGCAACATCAGATGTTGCCTCGGGGTTAGCAGTAGAGTTTTCTGGCTGAAGGCATACTGAGCTCTCCTGTTGCACCATTTTATTTGGGTAAACTGGTCCTGTGGGATCTGAAGAATGAAGAGAAACATTCCTTTTCTCTTTGGCTGGGAGGCAGTCCGCTCATctactgtgtgtctgtgtgtgtgtgagaagaatATGTTCACAATGTGTAATTACTAAACACAACTGCTCTTATAATGATGATGTAACATTGCATTATTAAATATAGTATTAATGTGGTTGAACTGGACTGACCTACACTGACCGTAGATTGTTGTTTGCTGTGACATAAGCCTGAAGCAGTGAGCATCATGCCTTTGtttcatttctttgattttatttaatattacgCTGCAAAGTCTgatgctgcttctgctgctgttaaTACATCTTCATTAATCCTGTcactaaaagaaaaatgttggaTAATGTTTAAAGAATCTGAAGCGATACTCCTTGTCTGtcttaaatgaaattaaataaatgattgttaAAGTTTA

Function

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0001889 liver development biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0005794 Golgi apparatus cellular_component

KEGG:

id description
K20308 TRAPPC11; trafficking protein particle complex subunit 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96624 lncRNA upstream 160902 6153881 ~ 6157418 (+) True G71613
TU96622 lncRNA upstream 231333 6086574 ~ 6086987 (+) True G71611
TU96619 lncRNA upstream 281661 6032185 ~ 6036659 (+) True G71608
TU96551 lncRNA upstream 300217 5966554 ~ 6018103 (+) True G71567
TU96648 lncRNA downstream 536 6345234 ~ 6345715 (+) True G71628
TU96785 lncRNA downstream 294968 6639666 ~ 6661997 (+) True LOC111193077
TU96786 lncRNA downstream 311862 6656560 ~ 6661997 (+) False LOC111193077
XR_002650233.1 lncRNA downstream 311982 6656680 ~ 6662003 (+) False LOC111193077
TU96826 lncRNA downstream 522350 6867048 ~ 6868404 (+) True G71747
XM_007253600.3 mRNA upstream 26936 6272216 ~ 6291384 (+) True LOC103031423
XM_007253601.3 mRNA upstream 306919 6008561 ~ 6011401 (+) True LOC103031741
XM_022672012.1 mRNA upstream 330554 5962280 ~ 5987766 (+) True tmem173
XM_022672009.1 mRNA upstream 361305 5871090 ~ 5957015 (+) False LOC103043949
XM_007253596.3 mRNA downstream 8941 6353639 ~ 6372363 (+) True LOC103029834
XM_007253595.3 mRNA downstream 8944 6353642 ~ 6372363 (+) False LOC103029834
XM_007253591.3 mRNA downstream 29851 6374549 ~ 6462450 (+) False LOC103028894
XM_022672017.1 mRNA downstream 29906 6374604 ~ 6462450 (+) False LOC103028894
XM_007253592.3 mRNA downstream 62756 6407454 ~ 6462450 (+) True LOC103028894
trnaa-agc_15 other upstream 280572 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 281446 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 812682 5499908 ~ 5505638 (+) True G71414
LOC111193046 other upstream 1338298 4979467 ~ 4980022 (+) True LOC111193046
TU96122 other upstream 1350413 4963702 ~ 4967907 (+) True G71249
TU96736 other downstream 180943 6525641 ~ 6538794 (+) True G71682
TU96877 other downstream 536889 6881587 ~ 6885541 (+) True G71788
TU97487 other downstream 2798201 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 3733881 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 6258654 12603352 ~ 12603424 (+) True trnar-ucg_4

Expression Profile