RNA id: XM_022672024.1


Basic Information

Item Value
RNA id XM_022672024.1
length 2183
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC103042719
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6509961 ~ 6520471 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGATGTGACGCAGCTGCTGGTCTTCGCGGTTCCTACCTGAGCAGCTGCAGCGATGGCGACGTCTTTAGGATCGAATACCTACAACAGACAGAACTGGGAGGATTCGGACTTTCCTATTCTCTGTCAAACATGTTTAGGGGAAAATCCTTACATTCGCATGtccaaGGAGAAATATGGAAAAGAATGCAAGATCTGTGCAAGGCCCTTCACTGTGTTCCGCTGGTGTCCGGGGGTTCGGATGCGCTTTAAGAAGACGGAGGTTTGTCAGACGTGCAGTAAGATGAAGAATGTGTGTCAGACCTGTCTACTGGATCTGGAGTACGGTCTTCCTATCCAGGTTAGAGACACTGGCCTGTCCATCAAAGATGATGTACCAAAATCAGATGTCAACAAggaatattacacacagaacatGGAAAGAGAGATCCAGAACTCAGACGGTACACGGCCGGTGGGCATGCTTGGTAAAGCGCCCAGCTCCAGTGATATGCTGCTGAAACTTGCCCGCACCTCACCCTACTACAAGAGAAATCGCCCCCACATCTGCTCCTTCTGGGTGAAGGGAGAGTgtaggagaggagaggagtgcCCTTACAGGCATGAGAAGCCTACAGATCCCGATGATCCTCTGGCGGATCAGAACATTAAAGACCGATTTTATGGCATCAATGACCCAGTTGCTAATAAACTGCTGCAGAGAGCCTCTACCATGCCCAGACTGGATCCACCTGAGGACAAGACCATCAGCACCCTCTACATCGGGGGTTTGGGTGAGAACATCACAGACTCAGAGCTCAGGAGCCATTTCTACCAGTTTGGTGAGATTCGCACCATTACTCTAGTGCAGAGGCAGCAGTGTGCCTTCATTCAGTTCGCTACGAGACAAGCGGCTGAACTGGCTGCAGAGAAATCCTTCAACAAGCTCATCGTCAACGGCCGCCGGCTCACCGTCAAGTGGGGCCGCTCACAGGCAGCCAAGAGCAAGGAGATTAAAGAAGGCTACAGTGAGATGGGCACCAGACTGGAGCCTGTTCCTGGTCTGcctgcagCTCTGCCCCCGCCTCCAGCTTTGGAAGATGAGACCCCAGCTAACTACTTTAATCTGGACCCCAGCAGCTCTTCAGCAATGTTGAATCTTAACCTGCCCCTCCCACCTGGCCTAGCCAACCCACCACCTCCAGGTTTTGGCCCTCCAGTGTTCCACCCCATGGGcccacctcctcctcccccaATGGCCTTGAGACCCCCAGGGCACATCCACTACCCATCTCAGGACCCTCAGAGAATGGGCACTCACGCTGCAACACGCCACGGAGACTAGAAGCTTCATCCTTACCAGATTCTGGGTTCATTGGTCGACTTCAGCTGAGACTGAAGAACTGCTGAGAGTGATCGTCTGATGAAAGGCCAGAGTGACGTCGTGCAGAGCATGACTGCCTCTGTTTATAAAGCTTATGGCTCTAGCTGATGAGATGACCCTTATTTTACTGACCCATAATTAGACTGACCCTGATGACCTTTCAGATAGAGGGAGGAGTTAGGGTAGAGGCACTGTTGGATTTTGAGAAATGGAGAGTGATGTCAATGTTAACAGCACAGGGTTTAGAGCTCATGTTTAAGTTTACACAGGAGCACAGCAACACGATTAACAGTGTCTGCCTAATTTGCTTAATTAGCCGTACAGAAAGTAACGAAATAAAACTGTGAACTAATCAACGTTTTCAATTGTTTGTCAGGTTGTTTACAGTAAAGGAGTTCTTCACACCCTTGCTGTTTGAGTGACTCTAATAGTTGATCTCTTTTGTATTATGTCAAAACCTCATGATTATTGGACTAATATAATGCTTTTATCTATTAGCCAGATTTTTTTAGGTTgacattttgaacatttttgtaATGTACCTGTTTATTACACTTTCAaatatattgggaaaaaaaatcttactctTATATACCTAGTTCCACTTACAGAATATTTTGAAACACATGATAGAAGCGGGGAAATGATGAAACGTTTAGGCAGCTATAGTCCTAAAGGTCTAGATTCCTGCACTTTTGTACGTTTCCTGTTTATTCACACTTGATTAAACTCAcccaataattattatatagcTCAGGAAATCTGACTCTGGCCCTGCTTTCCACTCGTGTTTAAATCTATCATTAAACCTTGTATTTGCGA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12872 RBM22, SLT11; pre-mRNA-splicing factor RBM22/SLT11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96648 lncRNA upstream 164246 6345234 ~ 6345715 (+) True G71628
TU96624 lncRNA upstream 352543 6153881 ~ 6157418 (+) True G71613
TU96622 lncRNA upstream 422974 6086574 ~ 6086987 (+) True G71611
TU96619 lncRNA upstream 473302 6032185 ~ 6036659 (+) True G71608
TU96550 lncRNA upstream 495579 6012222 ~ 6014382 (+) True G71566
TU96785 lncRNA downstream 119195 6639666 ~ 6661997 (+) True LOC111193077
TU96786 lncRNA downstream 136089 6656560 ~ 6661997 (+) False LOC111193077
XR_002650233.1 lncRNA downstream 136209 6656680 ~ 6662003 (+) False LOC111193077
TU96826 lncRNA downstream 346577 6867048 ~ 6868404 (+) True G71747
TU96876 lncRNA downstream 351677 6872148 ~ 6872364 (+) True G71787
XM_022672021.1 mRNA upstream 943 6472178 ~ 6509018 (+) False LOC103043030
XM_022672023.1 mRNA upstream 943 6482021 ~ 6509018 (+) False LOC103043030
XM_022672019.1 mRNA upstream 943 6487054 ~ 6509018 (+) False LOC103043030
XM_022672020.1 mRNA upstream 943 6487253 ~ 6509018 (+) True LOC103043030
XM_022672017.1 mRNA upstream 47511 6374604 ~ 6462450 (+) False LOC103028894
XM_007253586.3 mRNA downstream 20945 6541416 ~ 6559735 (+) True LOC103027224
XM_022672027.1 mRNA downstream 84833 6605304 ~ 6633875 (+) False LOC103026234
XM_022672028.1 mRNA downstream 87869 6608340 ~ 6633875 (+) True LOC103026234
XM_022672030.1 mRNA downstream 158125 6678596 ~ 6719028 (+) True LOC103042411
XM_007253581.3 mRNA downstream 412919 6933390 ~ 6940362 (+) True bnip1
trnaa-agc_15 other upstream 472213 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 473087 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 1004323 5499908 ~ 5505638 (+) True G71414
LOC111193046 other upstream 1529939 4979467 ~ 4980022 (+) True LOC111193046
TU96122 other upstream 1542054 4963702 ~ 4967907 (+) True G71249
TU96736 other downstream 5170 6525641 ~ 6538794 (+) True G71682
TU96877 other downstream 361116 6881587 ~ 6885541 (+) True G71788
TU97487 other downstream 2622428 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 3558108 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 6082881 12603352 ~ 12603424 (+) True trnar-ucg_4

Expression Profile