RNA id: XM_022672025.1


Basic Information

Item Value
RNA id XM_022672025.1
length 1243
RNA type mRNA
GC content 0.51
exon number 6
gene id LOC103036141
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6522057 ~ 6538782 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTCCAGGGCCAGTCTATACAAGCACTTTCCATCTCCATCCAGTCCAAGATCCAGCAGGACCTTCAGCACCATCACAGCTTCCccttcagcacacacactcacacacagaggAGAGAAGATGCAGAATTCACACAATAGCCTCGCCaaacagcggcagcagcaggcACTGGCCCTCAGCAGAGAAGTCAGaggagAGGGCCTGAACCTGGGGAAGAAGGTCAGCGTGCCCAGAGATGTGATGATGGAGGAGCTGAACCTGACGTCAAACAGAGGCTCCAGAATGTTCCAGGAGAGGCAGAAGAGAGTGGAGAAGTACACAGTGGAAAGCTGTGCTGACGCGTCTACTATCATATACGACAATCATTTTCAGAGCCAGCTCCAGAACCAGGATCAGACAGCCGAACACCTACATGGAGGGAAGGAGAACCTGGTGTACCCCGTACCTGGTAAACACAGTCTGGTTACCACTCTGAAGAAAACTGTGGCCAAGAAAGGCAGCCCCAGCGTCCTTGCTCCAGGTTACTCTGGTCCTCTGAAGGAAATTCCACGTGAGAAGTTCAACACCACAGTAATTCCCAAATCCTACTGCTCACCCTGGAGACAGGCACTGGGAGACAACGAGGAGCTCCTGTCCTCCTTAAACACAGAGCTACCTCCACCAGAGAAACTGCAGCCTGCTAACTACAGATGCTTCAACAGAGTTGCCATGCCTTTTGGGGGTCCCATGCACAGCACCAAGAGAGTGATCCCAATCATCAACTTTGAGGCTCTGGAATCCCAAAACCTGCCTGGCCTGGCGCTGAACAGGATGTCCAAAAGACGCGACTTCAACAGAGCACCTCGAGGATGGGGCACCGACTTTGCACCTGAATCAAACGAACTCTGAACCCACCTGCCTGCTGTTTACCTGCGGCTGAGAGCCTGTAGCACCTGCCTGTTGATGTGTCTGTCCCAAGATCTTGAACAAAACCCCTGGAAATGCTGCTGTAGTTGGCAGAGCAGAGGAGGCCAGTGTTCTCCACCAGGGTGTTCTCCCAAACATACTGGATACTTAGCATCAGTGCTAGCCAGCAATGTACACAGAGCAGAGAAGATTCTAGTGTGAAACAGATTTATGCTGGTGGTTTAAGTAGCTTTTAAAAAGTAGAGGTGTAAAACCGGTCTCCACAGTGTGGCTGCTGGTTTTCATTGCAGAAATTTAGAAGCTCATCTGAACAATTGATTAAACAAGTAAAATCAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96758 lncRNA downstream 23759 6493631 ~ 6498298 (-) True G71697
TU96727 lncRNA downstream 62426 6455555 ~ 6459631 (-) True G71675
TU96717 lncRNA downstream 147844 6368756 ~ 6374213 (-) True G71665
TU96708 lncRNA downstream 172037 6349703 ~ 6350020 (-) True G71659
TU96690 lncRNA downstream 201375 6318229 ~ 6320682 (-) True G71646
TU96767 lncRNA upstream 22342 6561124 ~ 6566115 (-) True G71704
TU96771 lncRNA upstream 66489 6605271 ~ 6612945 (-) True G71708
TU96776 lncRNA upstream 88285 6627067 ~ 6633649 (-) True G71712
TU96836 lncRNA upstream 175359 6714141 ~ 6732589 (-) True G71755
TU96852 lncRNA upstream 216650 6755432 ~ 6863292 (-) True G71766
XM_007253597.3 mRNA downstream 206216 6293684 ~ 6315841 (-) True hars
XM_007253598.3 mRNA downstream 206225 6293684 ~ 6315832 (-) False hars
XM_022672013.1 mRNA downstream 300204 6161655 ~ 6221853 (-) True LOC103043333
XM_022671905.1 mRNA downstream 485303 6012219 ~ 6036754 (-) True LOC103032061
XM_022672008.1 mRNA downstream 662687 5844641 ~ 5859370 (-) True LOC103035351
XM_007253587.2 mRNA upstream 32034 6570816 ~ 6583742 (-) True LOC103027842
XM_007253585.3 mRNA upstream 46892 6585674 ~ 6593124 (-) True LOC103026932
XM_007253582.3 mRNA upstream 325242 6864024 ~ 6868262 (-) True LOC103025929
XM_007253580.3 mRNA upstream 410794 6949576 ~ 6956193 (-) True LOC103025318
XM_007253579.3 mRNA upstream 446436 6985218 ~ 7006934 (-) True LOC103024994
TU96529 other downstream 680370 5829621 ~ 5841687 (-) True LOC103035656
TU96400 other downstream 1045682 5471666 ~ 5476375 (-) True G71458
trnaw-cca_42 other downstream 1597986 4924000 ~ 4924071 (-) True trnaw-cca_42
TU96095 other downstream 1637569 4882170 ~ 4884488 (-) True G71235
TU96020 other downstream 2109046 4411948 ~ 4413011 (-) True G71175
TU96859 other upstream 238457 6777239 ~ 6824756 (-) True G71771
TU96917 other upstream 518328 7057110 ~ 7057643 (-) True G71826
TU96981 other upstream 770993 7309775 ~ 7312926 (-) True G71862
TU97555 other upstream 2100756 8639538 ~ 8645601 (-) True G72336
TU97699 other upstream 2627096 9165878 ~ 9174309 (-) True G72449

Expression Profile