RNA id: XM_022672027.1


Basic Information

Item Value
RNA id XM_022672027.1
length 2387
RNA type mRNA
GC content 0.48
exon number 14
gene id LOC103026234
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6605304 ~ 6633875 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCCTCCTACACTCACTGGGAGCCTCATTATCCCAGTAAAGCACAGCACTCCACAGTTACTGGTGTATTTATCTGTCTGAGacccacacacagagagaatGGTGGCAGTTAGAGGGGTAGCTAAGGCTTTAGCTTCTCGTTGGTCTATGGGAGGGTCTTTTAAGGCAAAGGTCAGCAGGAGGTTGACCTCCAAACTGTTTCCTACCCAATATAAGACGCAGGCAGTTTCGGATGGGGagtTGAACATGTCCAGGTTGTCTGGTACAGGCAGCAGCCCCAGTCTAAACGGCAGCTCTTCTGGAGGCGCGGGTCTTCCTGGAGCGGACGGACCGGCCAGCAGGGTGGTTAGCTGGGCTGTGTGCTTCGAGCGGCTGCTGGAGGACCCAGTTGGAGTTCGTTACTTCACAGCTTTCCTCAAATCAGAAGTGAGTGATGAGAACATCCTCTTCTGGCAGGCCTGTGAGAAGTTCCAGAAGATTCCAGCCACTAATCTGGATGAGCTGAAGAGGGAGGCTCGCTCCATCTatgatctgtatctgtctgaAGCTTCCTTCAGTGCTGTGAACATAGACGACACGGCCCGCACTGCTGAGAGCGACCTGGAGAAACCCACACCCGACATGTTCAGCAAAGCACAGCAACAGATCTTTAAGCTGATGAAGTTTGATAGCTACGCGCGGTTCGTGCGCTCTCCGCTCTATCAGAActgcatgctggccagtgtggAGGGACGGCCGCTGCCCGACCTCCAGCCCCAGAACAGGGGCTCCAGAGAGTGCATCACATCCAACAACAATGACCGGAAGAGCATGGAAGTGAATGTATCTTTACTGGAtagcaaagcaaacaaaaagaagaggagagaagTGGAGAAGAGAGGATCATGGGGAGCGGACGTGTCGTACAGGCGGGTGACCGTGTCCAGACAAGAGTCTCAGATCTCAGTCAAGTCCAACAGCAGTGTAGAGCTGGGCTCCCTCTCCAGCAGATTTgagAATGGCAGTTCGAGTCCTGTAGGCTCAGATCCGGACTCCGCAGTCCGAGCGGATAAGTACTGCTGTGTGTATCTACCTGACGGCACGGCGAGCCTGGCTCCGGCCCGGGCTGGTCTGTCCCTGCGGGAGATGCTGAGCGGCCTCTGTGAGAAGAGAGGATTCCCTCTGAAAGACGTCATCATCTACCTCCAGGGCATAGACAAGCCTCTCTCTTTAGACCAGGACAGTTCTATACTCCGGGATCAGCAAGTCCACCTGGAACTCAAAGTGACATTTACGCTGGAGGTCGTGTTCACAGGGAAGACATCAGGAATCATGGCAAAGTCTAGTAAAACTGTGGGAGACGCTATCACGCCTTTTCTCCAGAAACACAACCTCCGACCGCAGGACGTTGTCGTCActatgAATGGATCAAAAGAACCGTTAAACTTGAGCACCAGCGTCTTACGTCTGGCCAACAAGACCCTCTGTCTGGACCGAGTCAAAAATGCTGGTGAGGTGAGAACAGGTCCAGCTCCAGACGTGGCCAGAACGAGTGCCAAGCCCAGAAGAATGCATGAAATGGATGGTCTGGTGGAGATGCTGAACCGAGCTCAGTGCAGTAGGGTGGATGACCAGCGTGGTTTACTGACCAAAGAGCAGCTGGAGCTGCCCCAGTTCCTCCAGCTCCCAGACGAGCAGAAAGAAGCAAAAAAACCCTCTGAGAATACGGACTGTGGTAACCAatcaggagaaaaagagaaacggGGCATTAATGGAGGTCAaagcataaacaaacagaagagTGAAGAAGAATGCCAGAAGGGGACATCATTGTGAGAGAATGTGCGTGTGTATGATTGTGTTGCACttttgtatattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgagagagaaagacatacaATATTACATACAATGTTTTTCACCAGCTGTCAAAAAGAGATCTATCATTAAAGACTGTGAACTGCCTTCTAATACTGTATTATCTTTTAAACGTTTAAACAGGAGGTTTTTCAAATATAGCTCTTCTTCACTGTGCTTTACTAATCTGtcatttttataaagaaaaaaagactacATGCAGAGAAGTCTCTgtagtgtgtatttatttttgtattgtgtgGAATGTTTTACTCTTATGATCAAGAATGAGAAAGCTTTTtcctatatttattatttagaacaTTTGATACACTTACACATGCCTTATGATGATTTGCATATGTTGCTCACTTATGAATTTGTTTCACTTGCATGAATTTGTTGTATTGAAAAGCatgagctgtgtttttttttaatgattttgtggtttttgttttgtgtaattTTGCCTTTGCTCTTATGGTGTAATATTGAAATATAGTTATGTATACTCCTGTTAA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96648 lncRNA upstream 259589 6345234 ~ 6345715 (+) True G71628
TU96624 lncRNA upstream 447886 6153881 ~ 6157418 (+) True G71613
TU96622 lncRNA upstream 518317 6086574 ~ 6086987 (+) True G71611
TU96619 lncRNA upstream 568645 6032185 ~ 6036659 (+) True G71608
TU96550 lncRNA upstream 590922 6012222 ~ 6014382 (+) True G71566
TU96785 lncRNA downstream 5791 6639666 ~ 6661997 (+) True LOC111193077
TU96786 lncRNA downstream 22685 6656560 ~ 6661997 (+) False LOC111193077
XR_002650233.1 lncRNA downstream 22805 6656680 ~ 6662003 (+) False LOC111193077
TU96826 lncRNA downstream 233173 6867048 ~ 6868404 (+) True G71747
TU96876 lncRNA downstream 238273 6872148 ~ 6872364 (+) True G71787
XM_007253586.3 mRNA upstream 45569 6541416 ~ 6559735 (+) True LOC103027224
XM_022672024.1 mRNA upstream 84833 6509961 ~ 6520471 (+) True LOC103042719
XM_022672021.1 mRNA upstream 96286 6472178 ~ 6509018 (+) False LOC103043030
XM_022672030.1 mRNA downstream 44721 6678596 ~ 6719028 (+) True LOC103042411
XM_007253581.3 mRNA downstream 299515 6933390 ~ 6940362 (+) True bnip1
XM_007253575.3 mRNA downstream 505161 7139036 ~ 7173548 (+) True LOC103023840
XM_007253577.3 mRNA downstream 505161 7139036 ~ 7173548 (+) False LOC103023840
XM_022672032.1 mRNA downstream 505161 7139036 ~ 7173548 (+) False LOC103023840
TU96736 other upstream 66510 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 567556 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 568430 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 1099666 5499908 ~ 5505638 (+) True G71414
LOC111193046 other upstream 1625282 4979467 ~ 4980022 (+) True LOC111193046
TU96877 other downstream 247712 6881587 ~ 6885541 (+) True G71788
TU97487 other downstream 2509024 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 3444704 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 5969477 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 6237609 12871484 ~ 12897931 (+) False LOC103043719

Expression Profile