RNA id: XM_022672030.1


Basic Information

Item Value
RNA id XM_022672030.1
length 2326
RNA type mRNA
GC content 0.52
exon number 13
gene id LOC103042411
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6678596 ~ 6719028 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATTCCCTTGGGAGTACGGAGTGTTATCTCTGAACATCTGTCACCTGCAGAGCAGACAATTAAACATCAGCTGTTTCTCAGGTCCTTAAGGAAACAGCATGTCCTCCCGGCCAATCAGAATCATCTCATCTAACCCAGGACAAGTGGGCAGCTACAATgGGATGGATCTCCACAGCTCCAACTCCacagagtgtgtagagtgtgacATGGGCTCCACCGTGGATCTCATCTGCAGCTGCTCTCATGCAGACCCCAACAGACTCGGCTCTACATCCCACGATGCCTGGGAAGGAGGAAGACCTCCAAAAGTacaagTGCTTCCTAATGCTCCCACtggagaaaaggaaaaaatgaaatCGCTCTTCATCAGTGTGATGAAAATTCCAGCGCTCTTCTTCCTCCTGTATTGCTTCGTCTGCTCCCTGGACACATTGAGCTCTGCATTTCAGCTTGCTGGGGGTAAGGTGGCGGGAGATATCTTCCAAGACAATGCGATTCTCTCTAATCCAGTGGCTGGGCTGGTGGTTGGAATTCTGGTCACTGTGCTCGTTCAGAGCTCCAGCACCTCCACATCCATCATCGTCAGCCTGGTCTCTTCCGGACtgttggAGGTGAAGTCTGCTGTTCCTATAATCATGGGTTCAAACATTGGCACTTCTGTTACCAACACCATTGTGGCTCTGATGCAGGCCGGAGAGAGGAACGAATTTAAACGGGCATTTGCTGGAGCTACCATTCATGACTGCTTTAACTGGTTATCTGTGTTGGTACTTTTGCCACTGGAGGTGGCCACTGGGCTGCTGAGCTTTCTGGCCCGGACTGTGGTCGGCAGCTTCCATCTGCAGAGCGGAGAGGAAGCACCAGAGCTGCTGAAGGTCATTACTGAGCCTGTTACCAAACTCATCATACAGCTGGATAAATCCGTGATAACAGGCCTCGCTTTGGGAGACGAGCGGATGAGGAACCGCAGCCTGGTGAAAGTGTGGTGCGGAAGCAGTGGCCTCATGCCATCTGTGAATGATTCTCAGAATTGCTCCTCTGGGTTTGATTGCTGGAAGGACGCTGACCACAGCAGTGCAGAGAGATGCTGGCATCTGTTTGCGAACACACACATGTCAGACCTGACTGTGGGGTTAATTCTGCTGGGTGTGTCTCTGCTGGTGCTGTGCTCCTGTCTGATCCTCATCGTCAAAGTCCTCAACTCGGTCCTCAAAGGACAAGTGGCCAAAGTCATTCAGCTCATCATTAACACAGATTTCCCCTACCCGTTCAGCTGGCTGGCAGGATATCTAGCCATGTTCATCGGAGCAGGAATGACGTTCTTAGTTCAGAGCAGTTCCGTCTTCACCTCTGCCATGACGCCACTTATTGGGCTTGGAGTGATCACACTGGAGAGGGCATACCCTTTAACACTGGGCTCCAACATCGGAACAACCACCACAGCCATCCTTGCCGCTCTGGCCAGTCCAGGAGACAAGCTGCCCTCTGCCTGCCAGATCGCTCTCTGCCACTTCTTCTTCAACGCGTTTGGGATTTTGCTGTGGTATCCGCTGCCCTTGACAAGATTACCCATTCGCATGGCCAGGGCGCTGGGCGAGCGGACGGCCAAGTACCGCTGGTTCGCCGTGCTCTACCTGCTGCTGTGCTTCCTGTTGCTTCCATCGCTCGTCTTCGGCCTGTCTCTCGCCGGCTGGCAGGCCATGGTGGGCGTGGGGGCACCTTTCGCCGGGGTTGCAACCTTCATCATCCTAGTGAACCTCCTGCAGACCCACAGCCCTCGCCACCTGCCCAGAAAACTGCGCAACTGGGACTTCCTGCCCACATGGATGCACTCCCTCAAACCTATGGACAAGCTCATCACCAGCACCACGGCCATGTGCTGCAGCCCTGCCCGGTCCCCTCCCACCACTGACCCAGAGGCCACCGGAGGACCTGACGCCACCGCGGTTAAGCCAGAATCAGTGGCGTCCAAGAGGAAAGCTCAACTAGCCTTCGACAACCCCATACTGTCCTATCAGGACGAGTCTCACACACAGCCACGAGTGTTCAAGCTGAAGGGTCTGGAGCGGTGCAATAGTACACCTCTGTAGAAAAGATAAATACCTCCAGTTACAGACCCACAGACTGTTGCCTGCTTACCAAAGTCAAAAAACGTCAACCATTGACATATTTCAGATCTGTGTGGACCTTTTAACACCTTGGTTTTAAAGCTGTGTATGTCCATGCCATCATGAGTACATTTGAGGGTACTGATGTCCATTCTTTGCCACATTTTGTAaagcaaaattattttattataaagtgtatGTACATTTTTCTAAACTAA

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006817 phosphate ion transport biological_process

KEGG:

id description
K14683 SLC34A, NPT, nptA; solute carrier family 34 (sodium-dependent phosphate cotransporter)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650233.1 lncRNA upstream 16593 6656680 ~ 6662003 (+) False LOC111193077
TU96785 lncRNA upstream 16599 6639666 ~ 6661997 (+) True LOC111193077
TU96786 lncRNA upstream 16599 6656560 ~ 6661997 (+) False LOC111193077
TU96648 lncRNA upstream 332881 6345234 ~ 6345715 (+) True G71628
TU96624 lncRNA upstream 521178 6153881 ~ 6157418 (+) True G71613
TU96826 lncRNA downstream 148020 6867048 ~ 6868404 (+) True G71747
TU96876 lncRNA downstream 153120 6872148 ~ 6872364 (+) True G71787
TU96898 lncRNA downstream 333995 7053023 ~ 7053324 (+) True G71808
TU96900 lncRNA downstream 338706 7057734 ~ 7058275 (+) True G71810
TU96894 lncRNA downstream 342664 7061692 ~ 7100725 (+) True G71805
XM_022672027.1 mRNA upstream 44721 6605304 ~ 6633875 (+) False LOC103026234
XM_022672028.1 mRNA upstream 44721 6608340 ~ 6633875 (+) True LOC103026234
XM_007253586.3 mRNA upstream 118861 6541416 ~ 6559735 (+) True LOC103027224
XM_022672024.1 mRNA upstream 158125 6509961 ~ 6520471 (+) True LOC103042719
XM_022672023.1 mRNA upstream 169578 6482021 ~ 6509018 (+) False LOC103043030
XM_007253581.3 mRNA downstream 214362 6933390 ~ 6940362 (+) True bnip1
XM_007253575.3 mRNA downstream 420008 7139036 ~ 7173548 (+) True LOC103023840
XM_007253577.3 mRNA downstream 420008 7139036 ~ 7173548 (+) False LOC103023840
XM_022672032.1 mRNA downstream 420008 7139036 ~ 7173548 (+) False LOC103023840
XM_007253576.3 mRNA downstream 420008 7139036 ~ 7173548 (+) False LOC103023840
TU96736 other upstream 139802 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 640848 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 641722 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 1172958 5499908 ~ 5505638 (+) True G71414
LOC111193046 other upstream 1698574 4979467 ~ 4980022 (+) True LOC111193046
TU96877 other downstream 162559 6881587 ~ 6885541 (+) True G71788
TU97487 other downstream 2423871 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 3359551 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 5884324 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 6152456 12871484 ~ 12897931 (+) False LOC103043719

Expression Profile