RNA id: XM_022672039.1


Basic Information

Item Value
RNA id XM_022672039.1
length 4087
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC103027052
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 7612712 ~ 7652490 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGGACAAAGGAGGTCTAAAGGACGTCATGAAGAGAGATGAGCGTCTAATCACCCTGAATTACAGCGACGGCCCAGCTGAGGGAGTTTTACAAAACGGAACACGCAGCACTATGTCTATCGCCTCCACTTCTCTAGTTCCTCCACCCAGCCCCTTGATGCAGCCTGTGACTGGGGACCTCCTAAATGGACTCAGCAGCTCCCCCACTCCGGAGGAGCTCACCACACCGGCCACACTGGACCTCTATATGGAAGATCTGGACATGAAAACAGTCGGGAGGGACCCGAGAGCCCAGCAGGCCTTCCAGCAGCAGTCGTCGCTGGGCTACTGCGGTGTGGGGGACAGCTTGTCACGGCTGGAGGCCAGCATTGCAGATCTCAGCAGCTCCTCTCCGTCTGTGGACTCTTTAATCGGAGGAGTGGATCCCAGCCTCTTCACACTGAAACATGAGGACTTCTCACCCATGGGCAAAGGGGATATAGATGTGGAGCCAGATCCGTTCGGGCCTATCGGAAAAGACATGGACTCGAGTACTCCGAAATTATTCAGCGAGAACACCCTGGACCTTCTGAATGATTTTGAGATTGAAACATCACCAGATTTCTATGTGGTAGATGAAGATTTCCCCCCATTGGGTGAGGACTCTCTACTGGGAGTCATTGGCCCAGAAAGGGACTTGAAGCCTGCAGCTTCTGTGAGTGACATCAATGGCACtagcaacagcagcaacaacatCAGCAGCAACAACGTCGGGAGTAACAGTGCAACCAGCTGTGCTTCTACCGGTCTGACTACCGCCAGCGCTCCCCTTGTGGTGAAGGTGGAGAAGGATCCAGTGCTCCAGCTCTGCACTCAAGGAGTGATCAAGCAGGAGAACACCGGTGGACGGAGCTTCTGTCAAATGGCGGGGAACGAACTGTCGAGCCCTCTTACTGCCCCATCGATCTCCATCTGTGGCGTCAGCACCTCCAGTGGGCAGAGCTACCGCTTCGGAAGTCCTGCCGCCACCAGCACCATCAGCATCCAGCAGAAAGATCAGAAgcccatttttaatgtttataccCCACAGCCCCTTGTTGGGGATGGCTGGGGAAGGAGTCTTGGGATACAGCAAAGGCCTGGGGATGGCTTCGCCAGCAACCAGAGCTTTACAACCAGCTATGCCAGcGGCACAAACAGGCCTGAGGCTACATCCACTGGCACAGGGAAATCCAGTGGCGCCACACACAAAATCTGCCTGGTGTGTTCAGACGAGGCGTCGGGCTGCCACTACGGTGTTCTGACCTGCGGCAGCTGCAAGGTCTTCTTCAAAAGAGCTGTGGAAGGATGGCGATCGAGACAAAACACAGATGGGCAACACAACTACCTGTGTGCTGGGAGGAATGACTGCATCATCGATAAGATCCGCCGGAAGAACTGTCCGGCCTGCCGCTTCCGCAAGTGTCTCATGGCCGGGATGAACCTAGAGgCACGCAAAGTCAAGAAACTAAAGGGCTTAAAGGGTGTGCAGCAGCCAAACGCAGCTGACCTGAGCCCAGCTCCAGTGCAGGAGGTGCGGGCGCTGGTGCCCAAGGCCATGCCACAGCTCGTGCCCACCATGCTGTCCCTGCTCAAAGCCATCGAGCCAGAGACCATTTATGCTGGATACGACAGCACACTGACCGACACATCCACTCGCCTAATGACCACCCTCAACAGGCTGGGCGGCCGCCAGTTCGTCTCCGCAGTCAAGTGGGCCAAAACTCTGCCAGGTTTTAGGAATCTTCACCTGGATGATCAGATGACTCTACTGCAGTCCTCCTGGCTCTTCCTCATGTCCTTCGGCCTGGGCTGGAGGTCCTACCAGCAGTGCAATGGAAACATGCTCTGCTTTGCTCCAGATCTGGTGATCAATGAGGAGAGGATGAAACTGCCCTACATGGGTGATCAGTGTGCACAGATGCTGAAGATCTCCAATGAGTTTGTCAGGCTGCAGGTGTCCAATGAGGAATACCTGTGCATGAAGgtcctgctgctgctcagcACCGTGCCAAAGGACGGTCTGAAGAGCCAGGCTGTGTTCGATGAGATCAGGATGTCCTACATTAAAGAACTGGGCAAAGCCATTGTCAGGAGAGAGGAGAACTCCAGCCAGAACTGGCAGCGATTTTACCAGCTCACTAAGCTACTCGACTCCATGCACGATATGGTGGGTGGACTGATGAATTTCTGCTTCTACACATTTGTGAACAAGTCTCTGAGCGTGGAGTTCCCCGAGATGCTCGCCGAAATCATCAGCAACCAATTACCAAAAATAAAAGCCGGGAGTGTCAAACCGCTGCTCTTTCACCAGAAATGAAACGAAAAACACACCCTTCCTCCAGCAACGGGACACCATGCCTTAAAAATACACCCCATCACCAACCGTTCCTCACTGAACATgcagagggacagagagacacagtaaaaagaatggaaagagagagaatgagagagtgagtgaatgaacgAATGagtaaatgaaagaaagaaagaaagagatggaaagagactAACTGAGGTCATTGTGGGACAATGGGACAGTGGATGGATGGGGAACAGTATGCAACCAACCCAATCTaatccaacccaacccaacacagAACCACGGTGGACAAGTGTTGACGGTGTTTAAAGACGGGTAAAGAAAGCATAATAGATCAGACAATTAAAAGCtaatacagacagaaagatacTGTATTAACTATACAGTAAGATAACTATGAAATTCTatggtggaaaaaaaattataccatAAATGTTGTCTCAGGTGTTTGATTCTCAACATTAAAATAAGTAGATAAACTAGCTATTTCTCAAAAATCTACGTTTGTATAGGTTTCAcataccttttttttgtttgtttgttttattaaattttcttttccttttgttttcttttttttttttttttgaacaaaGGAAACACCTTAGCACTTACTGTCTCAGATTATACAGTTCTATCTACCTATTATAGTAGGTTTTAGATTTTCAGAACTTCTCATTTTTATGTTGGTgagatataataatacaaagaGTTTATTACTTCATCTGATGATCTCATACTGATACACACGTTTTGTTTGAAATAATCATTTCAataatatgtacagtaaaatGGCTTTGGCGATGTAAGAAGTCGAACAGAGAAAATTTAATACTTACACATAACATATCTTTACTATTTTCAAGCTCACGTTTTTTGCTAACCTCTGTCGGAATTACACGATTATAGCAAAAGGGAAAAtatgtgcctttttttttagctcctcccattttAGCCATCTTCTTCTGTAACTGTGCGTACTGAGCGTTTTTGCATCCATCATGTTAGATAttgtatttgattgtatttttataCCCACTTGCACTGGCGATTTTCCTTTTTACCATGGCCGCCGTGTATTTGTTCTTGGCAGCTCCATGATTGCGTAgtgttaatttttaaaaagtggtcCTTATTGCTTTGGTATTGAAATTAGGAGTCTAATCTGTAACCCGCATCCTTTCCccattttgttgttgttctatAGAACTTTAGACTAAAATGCTGTTCGAGCACCTTCACTCCTattattaaatgctttaaagaGAACGAGAAAAGTGAGACGGAAGACGCTGGTGTTTACGcatttttagtctttttaatTCGTTGAGTTGAATTGAATGGAATAGGAATGAGTTATGAGGCTATGTGAATCATGGTTCTGATCGGAACGCAGTTCGATTTGGTCTTTTTGTTCTTGTGTaactgtgtatgtttgtgtgtgtgtgtgtgttttctccttGCTCACAATCATTCATCTATACAGCCATAACCATAAGCATAAGCATAGCATCAGGTACCAGTTTCGTTTTCATCACTGTAGCCAGACTAGTTAGTACTAGAAAAGCAATGCCAGAAGCCACGGTTCCCCAAAAGCCAAGAATACCCTCCACCCTACATCCTACACACTGTCCATTAACAAGAAGAATggatattattactatattattaataCTGTGCAATCAATTCTCACATTTACGCTCCAAAACATACAGAAATAggtatagaaatagaaaaaaataaa

Function

GO:

id name namespace
GO:0071548 response to dexamethasone biological_process
GO:0051414 response to cortisol biological_process
GO:0070509 calcium ion import biological_process
GO:0036367 light adaption biological_process
GO:0043402 glucocorticoid mediated signaling pathway biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0042921 glucocorticoid receptor signaling pathway biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004883 glucocorticoid receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97050 lncRNA upstream 84921 7527329 ~ 7527791 (+) True G71917
TU97043 lncRNA upstream 114442 7497778 ~ 7498270 (+) True G71910
TU97028 lncRNA upstream 126302 7486170 ~ 7486410 (+) True G71895
TU97027 lncRNA upstream 128561 7483663 ~ 7484151 (+) True G71894
TU97025 lncRNA upstream 134988 7477466 ~ 7477724 (+) True G71892
TU97065 lncRNA downstream 23053 7675543 ~ 7675776 (+) True G71931
TU97066 lncRNA downstream 23902 7676392 ~ 7685337 (+) True G71932
TU97074 lncRNA downstream 47392 7699882 ~ 7711858 (+) True G71936
TU97076 lncRNA downstream 59121 7711611 ~ 7718943 (+) False G71936
TU97086 lncRNA downstream 80952 7733442 ~ 7736160 (+) True G71944
XM_007253574.3 mRNA upstream 400216 7206477 ~ 7212496 (+) True LOC103023202
XM_007253577.3 mRNA upstream 439164 7139036 ~ 7173548 (+) False LOC103023840
XM_007258578.3 mRNA downstream 19068 7671558 ~ 7674663 (+) True LOC103027348
XM_007258573.3 mRNA downstream 67390 7719880 ~ 7725813 (+) True mars2
XM_022672043.1 mRNA downstream 787647 8440137 ~ 8641348 (+) True spock1
XM_022672044.1 mRNA downstream 1022359 8674849 ~ 8687469 (+) True LOC103031395
XM_022672045.1 mRNA downstream 1039460 8691950 ~ 8726635 (+) False LOC103028966
TU96877 other upstream 727171 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 1073918 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 1574964 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 1575838 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 2107074 5499908 ~ 5505638 (+) True G71414
TU97487 other downstream 1490409 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 2426089 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 4950862 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 5218994 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 6996339 14648829 ~ 14649551 (+) True G73533

Expression Profile