RNA id: XM_022672078.1


Basic Information

Item Value
RNA id XM_022672078.1
length 3211
RNA type mRNA
GC content 0.39
exon number 1
gene id LOC111193082
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 8927031 ~ 8930241 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGCCAATATTATTATTGTCTAATAGCAATTTTGGTAAAGTGCAGAAAATTTGCACTGCTTTTAGCATGAACTCATGAAGATAATGTAAGGGAGCTGTCCAGAAATGTGGTTCTGAATGTTATGGGCTGTATATGGTCTTGAAAACTCAATACTCTTTCCGTGTTGGGGTTTAACCTAATCTACATTGCTTGAGTCAGAACATTAATATATCTTTAAGATATGTAATCTGGGTGAAAATATGAGTAGCAGCCGAACTGCAGAAATGGGTTTACTAGACTTAGTAAAGATTTATTAATAGCATAACCTCAAAGTTAGAGAAGTCTCTTTTAGGTActatataatactttatttgCTAACTTGCATAAATATGATCTTGTGcatagaatttaaaaaatgttttccacTACCTGTTTGGATCACTGCTGTGGTCTCGCAAAAAATCGTATATCTTCAAAACGTTTTAGGTTAGAGAAAAaggcattttagcattttaacttctaaacatatttataaagatgTATATGAAAATAACaactgatctattttaaataggATTACTCGCTACatagttttcttgttttttcttgtaGTAAAATGTGGAATCGCACGGTGTCAGTGTAAACtaaaagaacgcttctgacgcGTTTGACTCCCAAACTGAACCACCTCATCATTTTGTGGCACATCTTTTTACACGGCTCATCGTCACACAGGCAGTGCATTTCAGTGTTCATCGGATtagtaatttaaatttaatgtgATGAAGTGAATGAGAACTAATATGGGAATTCACTGTGTGGACTGTCTCTGCTAACGTGGACGGACTCTGGAATAATTTCTCTTAAAATGGAACAAAGGCGTTCCGCATCATGGCGACTGAAGCTGGCTTGTGCAGgattgttacttttattttggagAGGGGTCTTTGCACAGATACGATACTCGGTTGTTGAGGAACAGAGGAATGGCACTGTTGTTGGAAACATCGCAAAGGATTTGGGTATTGATCAGAGAACTTTAAAAGAACGAGGATTTCGTATTGTATCGACGACAGGGGAACCTCTGTTCAGGGTAAATCGGAATGACGGAGTCTTGCACGTGAATGGGAAGATAGACAGAGAGGAGGTGTGCGAGAGGAGCAGTTCGTGCTTGATTAATCTAAAAATCGCACTTGAAAATCCTCTGGAGATTCATTATGTAACAGTTGAGATAGTTGATATAAATGATCATGCACCGATTTTCCCTGAGAAAGTAAAGCGATTGGAAATCTCAGAAATCGCCGTAGCTGGTGCGCGTTTTCAGCTTCAAGCTGCACGCGATGCAGACAGTGGAGTAAATTcagtacaaatatataaacttagCCAAAACGAACATTTTCGTATCGAGGTTAGGGACCGTGGTGAGGATGGAAAGATGCCCTTTTTCATTTTGCAGAAATCATTGGATAGGGAAACCTGCGCTAGACATAAGCTCCTCCTTACCGCACTAGACGGCGGGAGACCCCAGAAATCGGGTACTATGGAGATAATTGTGGATGTCATAGATATAAATGACAACGCGCCCGTTTTTACAAAAGACACGTATTCTGCAAAGCTTAGCGAAAATGCTCCTATTGGCACAAGAGTGATTCAAGTTAATGCAACAGACTTAGACAATGGTCCCAATGGTGaggtgttttatatttttggccAGGACGTGGACAGTAATTTGCGTCGAGTTTTTGACCTAGATCCAGTTACAGGCGAGATAGTTGTGAAAGGACCAATAGACTTTGAACAAAAATACCAATATGAGATTGATATCCAGGCATCAGATAAAGCAACAGTACCACTGACCACAGATAAGATTATCCTTATCCaaattgttgatgtaaatgacaATGCGCCGGAAATTGAAGTGACGTCATTTTCAATCGCAGTACCTGAGAACTCACATTCTGGAACAACAGTGGCATTAATTAGTGTAAGTGATGTGGATTCTGGAATGAATGGGAAAGTGTCCTGCTCAGTACCTGAAGATATACCTTTCAGTTTATTGCAATCCTCACAGGAGAACATTTATTCATTGGTAACTAAGTCATCACTGGATAGAGAGAAAACATCCCAGTATGACATCACATTTATTGCTAAAGATGCAGGACATCCACCATTATCCTCCATTAAAACTCTCACTGTGTTCGTTTCTGATGTAAATGATAACAGCCCAGAGTTTTCCTTAAACCCTTACACTTTTTATGTACCTGAAAATAATGTACCAGGTATGTCGCTGTTCTCTGTGTCTGCTCATGATCTTGACTTAGACGAAAATGCTATAATAAGCTACCACATTTGGAGAGACCCTGCTCAAGAAAATAAGCATTCATCTTTTCTAAATATAAACCGTGAAACTGGGGCGATATACGCACTGAAAAGTTTTGACTTTGAAACTATTAAATCATACCAGTTCTATattgtagcttcagattcaGGAACTCCATCACTTAGTAGCAACGTCACAGTAAATGTGTTCATACTGGATCAGAACGACAACGTTCCAGTGATCTTGTATCCAGTCAGCTCTAATGGATCTGCTGAAGGTGTGGAGGAGATTCCCCGCAATGTGAACGCAGGACATTTAGTGACCAAAGTGAGAGCCTATGATGCAGATATAGGATACAATGGCTGGCTATTATTTTCACTACAGGAAGTGAGTGACCACAGTCTGTTTGGTTTGGACCGctatactggacagataaggACCCTCCGCTCATTCACAGAAACTGATGAAGCTCTGCATAagctggtcatactggtcaaagACAATGGCAATGTGTCACTTTCAGCTACAGCGACTGTGATGATCAAAATTGTAGAACCCAAAGAGGCTTTTGCTGCTTCTGATGTTAAAAGCTCAGTACAAGATGAGGAAGACAATGATGTTACATTTTATCTGATCATCACTTTGGGCTCGGTCTCAGTGCTTTTTGTCATCAGCATCATTGTCCTGATCGTGATGCAGTGCTCTAAATCTACAGactattcctccaaatatttaCAAGATACAAATTATGATGGGACACTGTGTCACAGCATCCAATACAGATCAGGAGATAAACGTTACATGTTAGTTGGACCCAGAATGAGCATTGGTTCTACTATTGCCCCAGGCAGTAATAAGAATACTCTGGTCATGCCAGATTGCAGAAGAAGATTATCTGGAGAGGtaagataa

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650234.1 lncRNA upstream 133855 8784572 ~ 8793176 (+) True LOC111193079
TU97390 lncRNA upstream 442268 8483923 ~ 8484763 (+) True G72209
TU97383 lncRNA upstream 488936 8437870 ~ 8438095 (+) True G72202
TU97373 lncRNA upstream 506726 8420064 ~ 8420305 (+) True G72192
TU97364 lncRNA upstream 525553 8401246 ~ 8401478 (+) True G72183
TU97464 lncRNA downstream 25114 8955355 ~ 9036026 (+) False LOC103030246
TU97484 lncRNA downstream 159635 9089876 ~ 9090618 (+) True G72278
TU97469 lncRNA downstream 212121 9142362 ~ 9151966 (+) True G72263
TU97492 lncRNA downstream 297274 9227515 ~ 9227886 (+) True G72285
TU97515 lncRNA downstream 662066 9592307 ~ 9639931 (+) True G72305
XM_022672080.1 mRNA upstream 22937 8902284 ~ 8904094 (+) True LOC111193084
XM_022672077.1 mRNA upstream 30213 8894211 ~ 8896818 (+) True LOC111193081
XM_022672079.1 mRNA upstream 42843 8881863 ~ 8884188 (+) True LOC111193083
XM_022672081.1 mRNA upstream 53374 8872650 ~ 8873657 (+) True LOC111193085
XM_022671908.1 mRNA upstream 58076 8862120 ~ 8868955 (+) True LOC111193048
XM_022672065.1 mRNA downstream 28203 8958444 ~ 8961828 (+) True LOC103029169
XM_022672050.1 mRNA downstream 37356 8967597 ~ 9035761 (+) False LOC103030246
XM_022672076.1 mRNA downstream 40337 8970578 ~ 8973406 (+) True LOC111193080
XM_022672052.1 mRNA downstream 43669 8973910 ~ 9035761 (+) False LOC103030246
XM_022672055.1 mRNA downstream 47394 8977635 ~ 9035761 (+) False LOC103030246
TU96877 other upstream 2041490 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 2388237 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 2889283 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 2890157 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 3421393 5499908 ~ 5505638 (+) True G71414
TU97487 other downstream 212658 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 1148338 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 3673111 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 3941243 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 5718588 14648829 ~ 14649551 (+) True G73533

Expression Profile