RNA id: XM_022672079.1


Basic Information

Item Value
RNA id XM_022672079.1
length 2326
RNA type mRNA
GC content 0.38
exon number 1
gene id LOC111193083
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 8881863 ~ 8884188 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttcagtattcgTTAGTGCTTCTGTACTATTGTGGAATCCACAGGTAGTACATTTGTGTCCACCACTTAAAATCATGTTTCCTTAATACAAACCGAACATTGCACACCTCCTTAGTAAACCATTTTACAATTGTTTGGGACAACAAAGTTGTCTGGCTGGAGATTTAAAGCAAGCGGTCTGACGTTCAAGGTATGAAAAATTCTGTAGCAAAGTAAAAAATCCGCACAAATACTAGTTGCGAATAGGAAGAACtctctaatataaaaaaaacgcaAGTAAAACCAAATGTTATTTTGGTCGTGTCTAAGTTATTAGTGACCACTCGGCGTCAGTGttgttttaaaattgaaaaGATTGTTGTAAGCCCTCCTCTAAAAGCAGACATGCGTAGTTCTGTTTTGTTTCGGACGAACGTGGATATACAGCCTGAGAAAATGTAGCTCTGTAGAGTCTATGTCTGATTTGATAAACCGATTATTTGCTTTTAGTATGTAGTGCTAATTATGAACCTTGATTTGACGCAGTACTGCATTTTTTGAAAGTAgaggattttttattttctgttggaAGAGGTTTGGAGTAGTCGTATACAATGGAATATATCAAAGAGAGACGCAAATGGAAGTACTGCGGGATTTTTCTCGGCTTTTCTTTGCTGCTGTGCTTTGCGGATCAAGCGTCATCTCACATAAGGTACTCTGTTCCTGAAGAAGTCAAAGAGGGATACATTGTGGGAAATATTGCTAAAGATTTGGGCCTTGATGTAGGAACTCTGATGGACCGAGGATTTCGTCTCGTTTCTGGATCTAACGACGCCTATTTTCAGGTGAATCAGAACAATGGCATTCTGTCTGTTCATAAGAAAATCGACAGAGAAGAAATATGTGATGGCATGAACACCTGCATAATAGATATTAAAATCGTCGTCGAAAACCCTCTGGAGATCCATTACGTGGCAGTGGAAATTACAGACACGAATGATCATGCTCCAGTATTTCCAGATAAGCAACAAAGAATGGAGATAGCAGAAAACACTCTACCGGGCGCGCGCTTTCAGCTACGAAGTGCAAGGGATCCAGATATCGGGGTATATTCTGTGCGAGCCTACAAATTAACTCAAAACGAGCATTTTGATCTAGAAATAAGAGACAGGGGTGACGAGAAAGTACCCTTTCTCGTTTTACAGAGAGCAGTAGATAGGGAACGTAAAGCTGAACACAAATTACTACTGACAGCAATAGATGGTGGGAATCCACCAAATTCTGGTACTTTAAATGTTATTGTTACTGTTCTGGATAATAATGACAATCGCCCAGTGTTTAGTCATGAAGTGTACACGGCACAAATACATGAAAATATTCCGATAGGGACCATGGTCATCAAGGTTAATGCAATCGATTTGGATGAAGGGTTGAACGGAGAAGTTCTGTACTCTCTTGGAAACAACTATGGTATGtttgatttaaataatgttacagGTGAAATTTGGGTGAAGGGTGAAATAGactatgaaaaaaatgatgtataTAGACTAGATGTATTGGCTTCTGATAAAGGCACACCTCCAATGACAGTTGATTGCAGGGTCATTGTGAAAATTTTAGATGTTAACGATAACAATCCAGAAATAGAAGTTACATCACTTTCTAACTTAGTGCCAGAAAATTCCAAACCTGGAACTGTTATTTCATTAATCAGTATCTTAGATAAAGACTCCGGTGTAAACGGGAAGGTGTTATGCACGTTATCACCCAATATACCATTTGAACTTAAACCGTCTATAAAAGACAATATGTATTCCTTAGTCACAAAAACGCAATTGGACCGAGAGGAAACTTCACTTTATGAAATCAAAATCAAAGCAACAGATCTTGGTCAACCTCCCCtaactgcagaaaaaaatattagcgTTCAGGTGTCCGATGTGAATGATAATCGTCCGGAGTTTTTCCAAAATCCACTTGAACTTTATTTAATGGAAAATAACTCACCAAGTGCCTCAATGTATTCTATTGCTGCAGTGGATAAAGATATACATGAAAATGCAGCAATTTCATATAGAATTCTTAAAGAGAGTAgtttgcaaaacaaaatggctTCATTCCTCAATATTAATTCTGAAACAGGCGTTATTTATGCACTGACGAGATTTGACTTTGAAGTAACCAAGTCTTTTCAGTTCCACGTGCTCGCTACCGATTCTGGAACTCCACCACTGAGCAGCAACTCACAGTCAATGTGTTCATTCTAGATCAGAACGACAACGTTCCAGTGATCTTATATCCAGTCATCTCTAACGGATCTGCAGAAGGTGTGGAGGAGGTT

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650234.1 lncRNA upstream 88687 8784572 ~ 8793176 (+) True LOC111193079
TU97390 lncRNA upstream 397100 8483923 ~ 8484763 (+) True G72209
TU97383 lncRNA upstream 443768 8437870 ~ 8438095 (+) True G72202
TU97373 lncRNA upstream 461558 8420064 ~ 8420305 (+) True G72192
TU97364 lncRNA upstream 480385 8401246 ~ 8401478 (+) True G72183
TU97464 lncRNA downstream 71167 8955355 ~ 9036026 (+) False LOC103030246
TU97484 lncRNA downstream 205688 9089876 ~ 9090618 (+) True G72278
TU97469 lncRNA downstream 258174 9142362 ~ 9151966 (+) True G72263
TU97492 lncRNA downstream 343327 9227515 ~ 9227886 (+) True G72285
TU97515 lncRNA downstream 708119 9592307 ~ 9639931 (+) True G72305
XM_022672081.1 mRNA upstream 8206 8872650 ~ 8873657 (+) True LOC111193085
XM_022671908.1 mRNA upstream 12908 8862120 ~ 8868955 (+) True LOC111193048
XM_022672069.1 mRNA upstream 24347 8844403 ~ 8857516 (+) False LOC103031822
XM_022672054.1 mRNA downstream 4399 8888587 ~ 9035761 (+) False LOC103030246
XM_022672057.1 mRNA downstream 7377 8891565 ~ 9035761 (+) False LOC103030246
XM_022672077.1 mRNA downstream 10023 8894211 ~ 8896818 (+) True LOC111193081
XM_022672061.1 mRNA downstream 14920 8899108 ~ 9035761 (+) False LOC103030246
XM_022672080.1 mRNA downstream 18096 8902284 ~ 8904094 (+) True LOC111193084
TU96877 other upstream 1996322 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 2343069 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 2844115 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 2844989 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 3376225 5499908 ~ 5505638 (+) True G71414
TU97487 other downstream 258711 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 1194391 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 3719164 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 3987296 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 5764641 14648829 ~ 14649551 (+) True G73533

Expression Profile