RNA id: XM_022672080.1


Basic Information

Item Value
RNA id XM_022672080.1
length 1811
RNA type mRNA
GC content 0.40
exon number 1
gene id LOC111193084
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 8902284 ~ 8904094 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGGATGTTTTTATACGGCGCATCGTCTCATACAAGGAGCGTTTCTATGTTGATCAGATTGTTCGTTTTAGTTCAATAAGATTAATTTATTGAGCACTAATATGGGAATTCAGTGTGTGGATTATCACTAGTAACGTGGACGGACTCAGGACTAATTTCTCGAAAAATGGAACAAAGGCGTTGTGCATCATGGCGACTGAAGCTGGCTTGTGCAGgattgttacttttattttggaaaGGGGTCTTTGCACAGATTCGATACTCGGTTCATGAGGAGCAAATGAATGGCACTGTTGTTGGAAACATCGCAAAGGATTTGGGTATTGATCAGAGAATTTTAAAAGAACGAGGATTTCGTATCGTATCAACGACAGAGGAGCCCCTGTTCAGGTTAAATCGGAATGACGGAGCCTTACATGTCAATGGGAAGATAGACAGAGAGGAGGTGTGCGAGAGAAGCAGTTCGTGCCTGATTAATCTAAAAATTGCTCTTGAGAATCCTCTGGAGATTCATTATGTAACAGTTGAGATAGTTGATATAAATGATCATGCACCGATATTCCCGGAGAAAGAAAAGCGATTGGAAATATCAGAAATCGCCTTAGCTGGTGCGCGTTTTCAGCTTCAAGGTGCACGCGATGCAGATAGCGGAGTAAATTCagtgcaaatatataaactcaGTCAAAACGAACATTTTAGAATCGAGATTAAAGAGCGCGGATTGGATCGAAAGATGCCTTTCTTAATTTTACAGAAACCACTAGATAGGGAAACCAACTCAAGGCATAAGCTTCTACTTACCGCGCTGGACGGTGGGAGACCCCAGAAATCGGGCACAATGGATATATTTGTGGATGTGATAGATGTGAATGACAACGTGCCGGTATTTACTAAAGACTCTTACTCTGTAAAGCTAAGTGAAAACGCCCCAGTTGGTACAACAGTGATTCATGTAAATGCAACTGACGTAGACGAGGGTGCAAATGGTGAGGTATTTTATAGTTTTGGGCAAGATATGGACAGTGACCTGCTTAGAATTTTTGCCCTAGATCCTGTTACAGGTGAAATAGTTGTGAAAGGACCAATAGATTTTGAACAAAAGGAACAATACGAGATTGATATTCAGGCATCAGATAAGGCATTGGCACCACTGACCACAGATAAGAGCATTCTTATCCAAATTGTAGACGTAAATGATAATGCGCCGGAAATTGAAGTGACATCATTTTCAAGTGCAATACCAGAGAACTCAAAGTCTGGAACAACAGTGGCACTAATTAGTGTGAGTGATTTTGATTCTGGAATGAATGGGAAGGTGTTCTGCTCAGTACCTGAAGATATACCTTTCAGTTTAATTAAGTCATCACAGGAGAACATTTACTCATTAACAACTACTTCATCACTGGATAGAGAGAAAACATCCCAGTATGACATTACATTAACTGCTAAAGATGCAGGGCATCCACCATTATGTTCCATTAAAACTGTTACTGTGCTTGTTTCTGATGTAAATGATAACAGCCCAGAGTTTTCTGTAAACCCTTACACTTTTTATGTACCTGAAAATAATGTACCAGGTATGTCGCTGTTCTCTGTCTCTGCTCATGATCTTGATTTAGATGAAAATGCTGTAATAAGCTACCACATTTGGAGAgaccctgctgaagaaaataaGCATTCATCTTTTCTAAACATAAACCCTGAAACAGGGGAGATATATGCACTGAAAGTTTTGACtttgaaaatattaaatcattcaaGCTCTTTACTGTAGCATCAGATTCAGGAACTCCATCACTGAGCAGCAATGT

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650234.1 lncRNA upstream 109108 8784572 ~ 8793176 (+) True LOC111193079
TU97390 lncRNA upstream 417521 8483923 ~ 8484763 (+) True G72209
TU97383 lncRNA upstream 464189 8437870 ~ 8438095 (+) True G72202
TU97373 lncRNA upstream 481979 8420064 ~ 8420305 (+) True G72192
TU97364 lncRNA upstream 500806 8401246 ~ 8401478 (+) True G72183
TU97464 lncRNA downstream 51261 8955355 ~ 9036026 (+) False LOC103030246
TU97484 lncRNA downstream 185782 9089876 ~ 9090618 (+) True G72278
TU97469 lncRNA downstream 238268 9142362 ~ 9151966 (+) True G72263
TU97492 lncRNA downstream 323421 9227515 ~ 9227886 (+) True G72285
TU97515 lncRNA downstream 688213 9592307 ~ 9639931 (+) True G72305
XM_022672077.1 mRNA upstream 5466 8894211 ~ 8896818 (+) True LOC111193081
XM_022672079.1 mRNA upstream 18096 8881863 ~ 8884188 (+) True LOC111193083
XM_022672081.1 mRNA upstream 28627 8872650 ~ 8873657 (+) True LOC111193085
XM_022671908.1 mRNA upstream 33329 8862120 ~ 8868955 (+) True LOC111193048
XM_022672069.1 mRNA upstream 44768 8844403 ~ 8857516 (+) False LOC103031822
XM_022672059.1 mRNA downstream 1641 8905735 ~ 9035761 (+) False LOC103030246
XM_022672058.1 mRNA downstream 6027 8910121 ~ 9035761 (+) False LOC103030246
XM_022672060.1 mRNA downstream 18957 8923051 ~ 9035761 (+) False LOC103030246
XM_022672078.1 mRNA downstream 22937 8927031 ~ 8930241 (+) True LOC111193082
XM_022672065.1 mRNA downstream 54350 8958444 ~ 8961828 (+) True LOC103029169
TU96877 other upstream 2016743 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 2363490 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 2864536 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 2865410 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 3396646 5499908 ~ 5505638 (+) True G71414
TU97487 other downstream 238805 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 1174485 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 3699258 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 3967390 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 5744735 14648829 ~ 14649551 (+) True G73533

Expression Profile