RNA id: XM_022672081.1


Basic Information

Item Value
RNA id XM_022672081.1
length 1008
RNA type mRNA
GC content 0.40
exon number 1
gene id LOC111193085
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 8872650 ~ 8873657 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGTGTCAGTGTTGTGCTAACTTTTTTGTAAATCAGACGTCCTGCCCTAATGCTGACGTACACAGTCTATTTTCCTTCAAGATGAACTTGGGGGCAGTCTAAGCTGAGCTAATGTGACCATTTTAATGATTAAAGGCGTTTTAAATACTAGCAGTATTTGAAAATAGACATGCTGCTCATGCTTTATTGAAGTATCTAAAATCTGGAGTTTTCCTATTGTTTGGATATTCGCTTTGGAGAACTCATTTATGATGGATGACGGCAGACAAAGGCGAAGATGGGTGTATTGGATTATATCTTTACATTTCTCTATACTGCTGTTCTTCGAGGAGCAGGTTTTGGCTCAGATAAGGTATTCTTTACAAGAGGAGGTAAAAGAGGGATTCGTCGTAGGAAACACTGCTAAGGATTTGAGTATTGATGTCAACACTATGGTGGACAGACGGATTCGTATTGTCTCCGGATCTAATGACGATCTTTTTCGGGTAAACCAGAACAATGGCGTGTTGTATGTTCACAAGAAAATAGACAGAGAAGAAATATGTGAGAGCAACAATCCTTGTGTGGTTAACCTCAAAATCGTTGTAGAAAACCCACTGGAGATTCATTATGTGCGGATAGAAATAATGGATATAAATGACCACGCGCCTATTTTTTCCGAAGAGCAACAAAGAGTGGAGATAGCTGAAACCACGCACCCGGGGGCGCGCTTTCAGTTGCAGAGTGCACGTGATCCAGATATCAGTGTAAACTCCGTGCGCTCATACACATTGAGTCAGAATGAGCATTTTGATTTAGAGATCAGAGATATGGGAGATGAAAAGGTACCCTTTTTGGTTTTACAAAGAGCCTTGGACAGGGAGCATAAAGCTAAGCACGAAATAAAACTGACAGCAACAGATGGAGGAAATCCACCAAATCTGGAacattaaatatcactgtggtCGTTTTAGACAATAATGACAACCGTCCAGTGTTTAGTCAAGATATTTACACATCACAAATCCA

Function

GO:

id name namespace
GO:0045202 synapse cellular_component

KEGG:

id description
ko04727 GABAergic synapse
ko04723 Retrograde endocannabinoid signaling
ko05032 Morphine addiction
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650234.1 lncRNA upstream 79474 8784572 ~ 8793176 (+) True LOC111193079
TU97390 lncRNA upstream 387887 8483923 ~ 8484763 (+) True G72209
TU97383 lncRNA upstream 434555 8437870 ~ 8438095 (+) True G72202
TU97373 lncRNA upstream 452345 8420064 ~ 8420305 (+) True G72192
TU97364 lncRNA upstream 471172 8401246 ~ 8401478 (+) True G72183
TU97464 lncRNA downstream 81698 8955355 ~ 9036026 (+) False LOC103030246
TU97484 lncRNA downstream 216219 9089876 ~ 9090618 (+) True G72278
TU97469 lncRNA downstream 268705 9142362 ~ 9151966 (+) True G72263
TU97492 lncRNA downstream 353858 9227515 ~ 9227886 (+) True G72285
TU97515 lncRNA downstream 718650 9592307 ~ 9639931 (+) True G72305
XM_022671908.1 mRNA upstream 3695 8862120 ~ 8868955 (+) True LOC111193048
XM_022672072.1 mRNA upstream 15134 8844403 ~ 8857516 (+) True LOC103031822
XM_022672048.1 mRNA downstream 2210 8875867 ~ 9035761 (+) False LOC103030246
XM_022672056.1 mRNA downstream 5282 8878939 ~ 9035761 (+) False LOC103030246
XM_022672079.1 mRNA downstream 8206 8881863 ~ 8884188 (+) True LOC111193083
XM_022672054.1 mRNA downstream 14930 8888587 ~ 9035761 (+) False LOC103030246
XM_022672057.1 mRNA downstream 17908 8891565 ~ 9035761 (+) False LOC103030246
TU96877 other upstream 1987109 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 2333856 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 2834902 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 2835776 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 3367012 5499908 ~ 5505638 (+) True G71414
TU97487 other downstream 269242 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 1204922 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 3729695 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 3997827 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 5775172 14648829 ~ 14649551 (+) True G73533

Expression Profile