RNA id: XM_022672083.1


Basic Information

Item Value
RNA id XM_022672083.1
length 3578
RNA type mRNA
GC content 0.39
exon number 1
gene id LOC103034588
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9171322 ~ 9174899 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttattattgttattattaatagtttCATCATTTTATTAATACACATTTCACTTCTTGTTGTCGAGTTGACTAACAGTTATGTGAAATTTAATGCTCACTTAGTGTCTTAAGCCTCTGTCCTTGGTGCTGAAATCGACGTTATTCCTTCCAGATGCAGTTCATGGCATGGGTCTCTGTAAATTGTTAAAAGAATTGTCTGTTTAAGTTCGATActatttatgtaaatattaagtTTCATTATTAAGCATGTCTCTAACTTTCGTCATGGTTTAGAAATAATTTATATGCTtgcctttttaaataatttagctGTAATCCTACACGGTAATTCAAAGTTTACAGAAATGTATTTCGTTTTTTTTGCTCCacgtttttatatttatgttgcaGTAACAATTTTGCACTCTGTGTGACGCTGTTGGTTAGTGTGTGAAGGCTTTAAATTCTCAGGGAATGATCCTCCCTATATTGTGACATCACTGAGACTTCGCACTCTCTCGTTCATTCGGGATAAACTATACAGACCGAGAACACGTACGTTTTAACAGAAGAttcctattttttttgctgaatgaaGAAGCTCTGTTCGTCCCATGATTATGACATCACTGAAGAAAATAAATCGTCTTGTCCTTTTTTCCTTTGTCCTGGCGGTTGCACACGGGCAGGTCCGTTATTCTATTCCTGAGGAGATGAATAAGGGATCTGTTGTGGGAAACATCGTGCAGGATCTCGGGTTGGATGTTAAAAGACTGAAATCTGGTCGAGCGCGGATCTTTACAGAGGATAGTCGTGAGTACATCGGTCTAAATGTAGATAAAGGGACTCTGGTAGTGAGAGACAGGATAGATAGAGAGGAGCTGTGCGCCCAGGTTACTCCGTGCTCTTTACATTTTCAGATCATTCTAGAAAGCCCAATGGAGCTGCATAGAATCGATGTTGAAATATTAGATGTTAATGATCATTCTCCTGTGTTTACAAGAAATGAAATTAATTTCCAAATTAGTGAATCGGCTATGCCTGGTGCAAAATTTTCTTTAGATAATGCACATGATCCTGATGTAGGAATGAATGCTCTCCAACGATACACTCTCAATCCCACAGAATATTTTTCTCTGAAAGAAATCATTGGTAATGATGGGCTGAAATACGTAGAAATGGTGTTACAAGCATCACTTGACAGAGAGGACCGAGAGGAGCATACGctgtccttaatggcatttgATGGAGGCAGCCCACAAAAATCTGGTACTGTTAAAATAACCATTACAGTACTGGATGCAAACGACAATGCTCCTGTGTTCAGTTTGCCTGTATATCGTGTTACAATGCAAGAGAATTCGCCCAGAGGCACATATGTAGCAACAGTAGCCGCTACAGATAAAGATAAAGGGACAAACGCCCAGGTGACTTATTCATTTTCACAGAGTACAGGAAAGAATTTGGATTTGTTCAATATTGATTCAAAAACGGGCGATATCACTGTTACCAGTGAGCTGGACTTCGAGAAGTCAAAgcattttcaaataaatgttgAAGCAACAGATAAAGGAGGGCTAACAGATTCTTGTAAAGTAGTGATTGAAATCACTGACGTTAACGACAACGCACCCGTCATAAGCTTGATttctttttctaattcagtACCAGAAAACTCCCCTCCAGAGACAGTGATAGCCATGGTTAATGTAAAAGATTTAGATTTTGGGAAAAATGGACAGGTAAAATGTTCAATTGATCCAAATTTACCGTTTAAAATACAATCGTCCTCATCCAATTTCTACAGTGTTGTAACTGATCAGGTTTTGGATCGAGAGACTAAACCTgagtataatataacaataagaGCTACTGATGATGGTTCTCCTTCATTTTCtaccaataaaacattaaatctgaAAATATCTGATGTGAATGACAACGCCCCTCTGTTTCAGCATCAGTCATACACTGCTTATGTGCTGGAAAATAACACACCTGGAGTGTCTATATTCGCAGTGACAGCAGCTGATAAAGATTCTGGTAACAACGCGCGTATTTCCTATTTTCTTGAGGATGTTCTCGTGAATGGAGTTTCAGCCTCGACTCATATTTCAGTGAATGCAGAGTGCGGAGCAATTCTTGCTGTTCGCTCTTTTGATTACGAGCAAACCAAAGAGTTTCATATTCGTGTAAAAGCGCAAGACGGAGGAAATCCTCCTCTCAGCAGCAATGTGAGTGTGAAAATAGTGATTCAGGACCAGAACGACAACGCGCCTCAGGTTCTGTATCCAGTGCAGACTGGTGGCTCTGTGGTGGCTGAAATTGTGCCTCGTTCAGCAGAGGTGGGATATCTCGTGACCAAAGTGGTGGCTGTTGATGTGGACTCTGGACAGAATGCCTGGCTCTCATATAAACTGCAGAAAGCTACAGACAGGGCGCTGTTTGAAGTGGGCTTACAGAATGGAGAAATAAGAACTGTGCGCCAGGTGACCGATAAAGATGCTGTGAAGCAGAAGCTCACTGTTGTAGTGGAGGACAACGGACAGCCCTCTCGTTCAGCTACAGTCAATATTAACGTGGCGGTGGCGGACAGTTTCCCTGAAGTGCTCTCGGAGTTCACTGACTTTACGCATGACAAGGATTACAACGACAACATGACTTTTTATCTAGTCTTGGCCTTGGCTGTTGTTTCCTTTCTGTTCATCGTGTCCATCATAGCCATACTTTTAGTTAAATGCTACAGATGGAGGCGCGAGAGGATGTTTTACAAATCCGGTGCCAATCTGCCAGTTATTCCATATTATCCACCTCTTTATGCAGACGTAGGGAGTACAGGAACATTACAGCATGTGTATAATTATGAGGTATGCAGGACGACTGACTCCAGAAAGAGTGATCTGAAATATGTAAGACCTTCCAGTGAGAGCATAATGAGTTTGGATACCAGcggaacacacacactcaggcatGCGCAAAGAGACAATCTGATAAATGACTGTGAAGATCAGGTAAGATTTGGTCACTAATGAGAATTTCAAATGTACTGTAAGTAATTTAATTCCATTTAGAATTGATCGGTCTATATTAAAATGCCATTGATGTCCTCGCCACAATACAAAtttgttgattttattttattttgaatcattATATTCTCAAACGTTTGTTTTGTTGCTGTTGGTGTTGttatgccccccccccccctttcttcATTTAAGCTTATGATTGTTGTATTTACTTCTCTATAATTATAATAcgattatattttaaaatatcaaaatgttattatgtaatttattgGTAATAAATCGAGGTTTATCTCTAAGTTCCATTTTAACAATTACAAAAAGattcttttctcttttgttgTAGTATTATTTTAGAACTCTGGTCGACGCTGTTGGTCAGTGTGTGCAGGTTTTAAAGATCAGTTGTGGATCCTCCTCCACATTCTGACATCGTGCATGAAGCAGTATTACTCTGCAGTTCTGACTGAGGACCCAATGTAGAACCATAGACAAGTATTTCTTACCAGttatttcaaatatattcacATTATTTAATAGTGATAAGAGTAATTGACGCTCAATCGAATA

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K16495 PCDHGA; protocadherin gamma subfamily A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97469 lncRNA upstream 19356 9142362 ~ 9151966 (+) True G72263
TU97484 lncRNA upstream 80704 9089876 ~ 9090618 (+) True G72278
TU97464 lncRNA upstream 135296 8955355 ~ 9036026 (+) False LOC103030246
XR_002650234.1 lncRNA upstream 378146 8784572 ~ 8793176 (+) True LOC111193079
TU97390 lncRNA upstream 686559 8483923 ~ 8484763 (+) True G72209
TU97492 lncRNA downstream 52616 9227515 ~ 9227886 (+) True G72285
TU97515 lncRNA downstream 417408 9592307 ~ 9639931 (+) True G72305
TU97519 lncRNA downstream 423050 9597949 ~ 9651534 (+) False G72306
TU97521 lncRNA downstream 423050 9597949 ~ 9651534 (+) False G72306
TU97518 lncRNA downstream 474248 9649147 ~ 9651534 (+) True G72306
XM_022672084.1 mRNA upstream 8579 9158954 ~ 9162743 (+) True LOC111193086
XM_022672087.1 mRNA upstream 12924 9156733 ~ 9158398 (+) True LOC111193089
XM_022671909.1 mRNA upstream 18062 9134449 ~ 9153260 (+) True LOC111193051
XM_022672088.1 mRNA upstream 29240 9137787 ~ 9142082 (+) True LOC111193090
XM_022672085.1 mRNA upstream 41092 9127307 ~ 9130230 (+) True LOC103033934
XM_015608812.2 mRNA downstream 12345 9187244 ~ 9194515 (+) True LOC107197946
XM_015608793.2 mRNA downstream 21554 9196453 ~ 9225559 (+) True LOC111188173
XM_022672093.1 mRNA downstream 101647 9276546 ~ 9348427 (+) True pcgf3
XM_007228037.3 mRNA downstream 616372 9791271 ~ 9799463 (+) True LOC103043406
XM_022672096.1 mRNA downstream 652388 9827287 ~ 9853057 (+) True tbc1d2
TU97487 other upstream 21903 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 2285781 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 2632528 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 3133574 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 3134448 6036802 ~ 6036874 (+) True trnaa-agc_14
TU97933 other downstream 903680 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 3428453 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 3696585 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 5473930 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 5716635 14891534 ~ 14921003 (+) False rpgrip1l

Expression Profile