RNA id: XM_022672084.1


Basic Information

Item Value
RNA id XM_022672084.1
length 3790
RNA type mRNA
GC content 0.38
exon number 1
gene id LOC111193086
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9158954 ~ 9162743 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttaatattgtcatTATATTATTAACACAAATTTCATTGTTTCGAGTTGACTAAAAGTCGTAAGATATTTAGTGCTTATTAGATTAGTGAATCCTCTGGACGTGGTGCTGAAATTGACTTTAGTCCTTCCAATAACAGTTAATTACATGGATCtctttaaactgttaaaacaaTGGTCTGTTTGAAttctttactatttatttaaatactatATTACATTGTTAAGCATGTCTCAAACTTTTGTCCCGTTATAGAGatcatttatattttcattttttcataaaTTTAGCTGTAGTCTTACATGGTAATTCAAAGATCACAACAATGTATCTAGTTTTTCTTGCtccacttttttatatttatgttgtaGTAACATTTTTGGACTCTGTGTGACGCTGTTGGTTAGTGTGAAAAGGCTTTAATTTCTCATTGAATGATCCTCCCTATATTGTGACATCACTGAGACTGCGCATTCTCTCCTTCATTCGAGATAAACTCTTCAGACCAGAACACGTACAGACGTCGTTCTTGCTCaccttttgtattttttctgtagtttaacTATACTAAATCATGCAAACACTTTTTGATCTTTAATACTGGATCATAAACATGTCAATataatctcattttttttcctttttttcctgaaaGGAGAAGCTTATGTTTCCGTGATATTACATCGCTTAAAGAGATGAAgcttcttgtctttttttcctttgtccTGGTTGTTGCGCACGGGCAGGTCCGTTATTCTATTCCTGAGGAGATGAGTAAGGGCTCTGTTGTGGGAAACATCGTGCAGGATCTCGGGTTGGATGTAAAAAGACTGAAATCTGGTCGAGCGCGGATCTATACGGAGGACAGTCGTGAGTACATCGGTTTAAATGTGGATAAAGGGACTTTGGTGGTGAAAGAGAGGATAGATAGAGAGGAGCTGTGCGGCCAGGTTACTCCGTGCTCTTTACATTTTCAGATCATTCTAGAAAACCCTATGGAGCTGCATAGAATCGATGTAGAAATATTAGATGTAAACGATCATGCTCCGAACTTTACAAGAAAGCAAATAGATTTTGAAATAAGTGAGTCAGCCACCCCCGGTGCTCGATTTTCTTTAGATAATGCACGCGATCCTGATGTAGGTTTAAACGCATTGCAGAGATATACCCTTAACCCAActgatcattttaatttaaaagaattaTCTCGTAGTGATGGCACTAAATACGTTGAGATGgttttacaaatacatttgGACAGAGAGCAACAAGAAGAGCATAAATTAATTTTGACTGCTTTTGATGGAGGAAATCCTCAAAAATCTGGAACAGTTAAAATAACCGTCGTTGTTATTGATGCAAACGACAATCCTCCCGTGTTCAGTCAGCCTGTTTACCGAGTGTCTTTACCAGAAAATGCTCAAAAGGGCAGTTCAGTAGTGACTGTACGCGCTACCGACAAGGACAAAGGCTCCTATGGTGAGGTTTCATATTCATTTTCACAGAGCACTGGAAAAGCTATGGATTTTTTCACCGTTAATTCAGATACGGGAGACATTCGAGTTAATGGAATCTTAgattttgaaaaatctaaacagTACGAACTTAATGTAAAAGCAATGGACAATGGTGGATTAACTGACACCAGTAAAGTGCTAGTTGAAATCACTGATGTTAATGATAATGCACCTGTTATCAGTGTTATCTCATTTTCCAATCCCATACCAGAAGATTCCGCCCCGGAGACTGTTATAGCGATGCTCAATATTAAAGACATCGACTTCGGTAAAAACGGTCAGATTAGATGTTTAGTGGATTCAGATTTACCATTTCGCATCAAATCCTCTTCCTCTAATTTCTACAGTTTAATCACTAATCAGTTTTTAGACCGAGAGAAATGTtctgaatataatataacaataacagcTACTGATGAGGGTTTTCCTTCATTCTCTACCAATAAAACTCTCAATCTGAAAATATCTGATGTAAATGACAACGCCCCTCTGTTTCAGCATCAGTCATATACCGCTTATGTGCTGGAAAATAACACACCTGGAGTGTCTATATTCGCAGTGACAGCAGCTGATAAAGACTCTGGTAACAACGCGCGCATTTCCTATTTTCTTGAGGATGTTCTCCTGAATGCAGTATCAGCCTCAACATATATTTCAGTGAATGCAGAGAGCGGAGAGATTCTTGCTGTTCGCTCTTTTGATTACGAGCAAATCAAAGAGTTTCACATTCGTGTAAAAGCGCAGGACGGAGGAAATCCTCCTCTCAGCAGCAATGTGAGTGTTAAGATAGTGATTCAGGACCAGAACGACAACGCGCCTCAGGTTCTGTATCCAGTGCAGACTGGTGGCTCTGTGGTGGCTGAAATGGTGCCTCGTTCAGCAGAGGTGGGATATCTCGTGACCAAAGTGGTGGCTGTTGATGTGGACTCTGGACAGAATGCCTGGCTCTCATATAAACTGCAGAAAGCTACAGACAGGGCGCTGTTTGAAGTGGGCTTACAGAATGGAGAAATAAGAACTGTGCGCCAGGTGACCGATAAAGATGCTGTGAAGCAGAAGCTCACTGTTGTAGTGGAGGACAACGGACAGCCCTCTCGTTCAGCTACAGTCAATATTAACGTGGCGGTGGCGGACAGTTTCCCTGAAGTGCTCTCGGAGTTCACTGACTTTACGCACGACAAGGATTACAACGACAACCTGACTTTTTATCTAGTCTTGGCCTTGGCTGTAGTTTCTTTTCTCTTCATCGTGTCCGTTATAGCTATACTGTCAGTCAAATGCTACAGATGGAGACGTGAAAGGATGTTTTACAAATCAGGTTCCAATCTGCCAGTTATTCCATATTATCCACCTCTTTACGCAGACGTAGGGGGGACAGGAACTTTACAGCATGTGTATAATTATGAGGTCTGCAGGACGACTGACTCCAGAAAGAGTGACCTGAAATACATGAGACCAACTCAGAGCATCATTAGTCTTGATACAAATGGAACACAGACTCTCACACATGCGCAGAGGGAGAAATTAATAAGTGACGATTTTGAAGATCAGGTAAGGGttggttattattgttattaataatagtCATCATAATTGTCATCATTTATAGTTTTCATATTATTAATACACATTTCCCTTCGTGTTTTCAAGTTGACTaacagttctaaaaaaaaatgtaatattcactGGATGTGTTAAGCCTCTGTCCTTGGTGCTGAAATTGACGTTATTTCTTCCAAATACAGTTCATAGCATGGGTCtctttaaattgttaaaataattatCTGTTTAAGTTTAATAcaatttatgtaaatattatatttaattttaagcatgtcTCTAAATTTCGTCTCGTTTTATAGATCATTTATATAATTGCCTATTTAATACATGTAGTTCTAGCCTTACACGGTAATTCAAAGGTCACTACACGTATTCCGTTTTCTTGCTCCacgtttttatatttatgttgcaGTAACATTTTTGCACTCTGTGTGACGCTGTTGGTTAGTGTGTGAAGGCTTTACATTCTCAATGAATGATCCTCCCTATATTGTGGCATTACTGAGTTtgcgcactctctctttcattcgAGATAAACTCTACAGACCGAGAACACGCACAGACATCGTTCTTTCTCACCTTCTATTTTTCTTCTCAGTTTTATTATACTGAACCATGAACACCTTTTAGTCTGCAAGTTtggtttataaacatttcaACAGAAGATTTCTTTCGTATTTGTTTGCTGAAAGAAGAAACTTTCTTCTACCC

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K16495 PCDHGA; protocadherin gamma subfamily A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97469 lncRNA upstream 6988 9142362 ~ 9151966 (+) True G72263
TU97484 lncRNA upstream 68336 9089876 ~ 9090618 (+) True G72278
TU97464 lncRNA upstream 122928 8955355 ~ 9036026 (+) False LOC103030246
XR_002650234.1 lncRNA upstream 365778 8784572 ~ 8793176 (+) True LOC111193079
TU97390 lncRNA upstream 674191 8483923 ~ 8484763 (+) True G72209
TU97492 lncRNA downstream 64772 9227515 ~ 9227886 (+) True G72285
TU97515 lncRNA downstream 429564 9592307 ~ 9639931 (+) True G72305
TU97519 lncRNA downstream 435206 9597949 ~ 9651534 (+) False G72306
TU97521 lncRNA downstream 435206 9597949 ~ 9651534 (+) False G72306
TU97518 lncRNA downstream 486404 9649147 ~ 9651534 (+) True G72306
XM_022672087.1 mRNA upstream 556 9156733 ~ 9158398 (+) True LOC111193089
XM_022671909.1 mRNA upstream 5694 9134449 ~ 9153260 (+) True LOC111193051
XM_022672088.1 mRNA upstream 16872 9137787 ~ 9142082 (+) True LOC111193090
XM_022672085.1 mRNA upstream 28724 9127307 ~ 9130230 (+) True LOC103033934
XM_022672086.1 mRNA upstream 36163 9120530 ~ 9122791 (+) True LOC111193087
XM_022672083.1 mRNA downstream 8579 9171322 ~ 9174899 (+) True LOC103034588
XM_015608812.2 mRNA downstream 24501 9187244 ~ 9194515 (+) True LOC107197946
XM_015608793.2 mRNA downstream 33710 9196453 ~ 9225559 (+) True LOC111188173
XM_022672093.1 mRNA downstream 113803 9276546 ~ 9348427 (+) True pcgf3
XM_007228037.3 mRNA downstream 628528 9791271 ~ 9799463 (+) True LOC103043406
TU97487 other upstream 9535 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 2273413 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 2620160 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 3121206 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 3122080 6036802 ~ 6036874 (+) True trnaa-agc_14
TU97933 other downstream 915836 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 3440609 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 3708741 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 5486086 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 5728791 14891534 ~ 14921003 (+) False rpgrip1l

Expression Profile