RNA id: XM_022672085.1


Basic Information

Item Value
RNA id XM_022672085.1
length 2924
RNA type mRNA
GC content 0.42
exon number 1
gene id LOC103033934
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9127307 ~ 9130230 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGATGTTTAACTAGTGTTATTCCTTTACAATGTTACGATTAATGGGGCTGTGGGGACTTCCCCGTTGTCTCTGTCCAGGGTTCTGAAAGGTATTAGTGCTTGGAATGTCTTAAAATATCTTTGTTAAATCACATACCTTATTTGAAACTGGCTTTTGCCGACTCACTCTCACTTTCCTGTATGTGAAGCATTCTTGTTCACATTTCATCTTCGAAACTGAACTCTTTTTTTACTGATGACTGCTGTAAATAAGTTTTTCTATTGCTGTGGAACAAATGTTAAGAGGGATACTTTATATTGAGTGCAATACATACTTCTAAACTCTAAGTGCCGCTGTTGTCCAGTGTTTGTGGTTAATATGTAAATTGGTAGCAGCCCCTCCCAGCTATCTGAACATTTTATGTACGCAACACTCAGGGTTGAGATGAAACACGCCTGGACGAGTACAAATATCGATTTTTAAAGGACAtgctttaaacatttttgtttgtatCACAATTTTCtgtgaatcttttttttatcgAATATAGCACGCTTCCTCTCTTGACTGTCTGCCTATTCCACTGGATCTTTTTTAAAGTGTCGCAGAGGAAGAAATCGAAAAGAACAATGGCGCGGCAAGTACTGCTGTTTGtgtatctcctctctctcaatTCAGTGCGCGGACAGGTCAGTTACTCCATTCCTGAAGAAATGCCGAAAGGATCTTTAGTCGGTAACATAGCGCAagatttaggtttagatttaaagAGACTGAAATCAGGTAAAGCTCGTATTTATACAGGAGACAGCGCTGAATACATCGAGCTGAATAAAGAGAGGGGACTCCTCCTTATTAAAGAGAGAATAGACAGAGAAGCTCTGTGTGGACAGACAATGCCGTGCGCTCTACATTTTCAGATTATTTTAGAGAATCCGATGGAATTGTTCAGAGTTACTATTGAAATAACCGACATTAATGATAATTCACCAGTCTTCGAGAAATCAGAAATTAAATTTCGTATAAGTGAGTCAGCAGTGATTGGTAGTAAATTTGCGCTGGAAAGGGCTATGGACCCAGATGTCGGTGTGAACGACCTTCAGAGCTATGCTCTTAGTCCTAAAGAAAATTTCAAtctgaaaattaaaaatcaacctGATGGGACTAAACTGATTGAAATGGTTTTACAAACAGCGCTTGACAGAGAAAAACGGGACGAGATTTATTTAATTCTGACTGCCGTAGATGGTGGTGACCCCAAATTATCCGGTACTGCTCAAATCTATGTAACAGTGTTGGATGTAAATGACAACGCGCCTATTTTTTCACAGCCTCTCTATAAATCCACAGTGAACGAAAATGCTCTTAAAGGAACAATCCTTGGTCAAGTGAGCGCCTCAGATGCTGATCGCGATggtaacggtgatatcatttatAGCATAACCAATACAATGGACAATGTACGTGATATATTTGACGTAAATGCAAACAATGGAGAGATAATGGTAAGAGGACAAATTGATTTTGAAAAGGCTCGTCACTATGAAATACATATTCAAGCTACTGATGAGGGTGGGCTCACAGACTCGTGTAAAATGCTAGTTGACGTTTTAGATGTGAATGATAATATTCCATCAGTCAATGTGCTTTCGATGTCCAAAACAATAATTGAAAATTCTAAACCAGGTACAGTTGTGGCTATGTTGAATATTCAGGATCCTGATTCAGAACAAAATGGACAAATTACTTGTTCAATTAACGATAATCTTCCTCTAGCGTTGAAATCAGcatctgatcatttttatagCCTTGTCACAGACACCGACTTAGACCGAGAAAGAGAGTCTGGGTATAATATCAGTATCATGTGCTCTGATGAGGGGTCTCCGTCTCTCTCCAGCAGCGTCACTCTCACCTTACAGATATCAGACGTTAATGATAACGCTCCTGTTTTTGAGAGGAGCTCATATGTGGCCTCTATTTCAGAAAATAACACACCAGGTCTCTCCATAATCAGAGTCAAAGCCAGAGACGCAGACTGGAACCAGAATGCGCGTGTTTCTTACATTCTGCAGGACTCGTCCGTAAACGGTGTTTCTGTCTCCTCTTATGTTTCTGTCAGTGCTGATAGTGGCATTATCCACGCAGTGCGTTTTTTTGACTACGAGCAAATCAAGGATTTTCAATTTCGCGTAATAGCTCAAGATGGAGGCTCCCCTCCTCTCAGCAGCAATGTGAGTGTGAAGATAGTAATTCAGGACCAGAACGACAACGCACCTCAGGTTCTGTATCCAGTGCAGACTGGTGGCTCTTTGGTGGCTGAAATTGTGCCTCGTTCAGCAGAGGTGGGCTATCTCGTGACCAAAGTGGTGGCTGTTGATGTGGACTCTGGACAGAATGCCTGGCTCTCATATAAACTGCAGAAAGCCACGGACAGGGCGCTGTTTGAAGTGGGCTTACAGAATGGAGAAATAAGAACTGCGCGTCAGGTGTCCGATAAAGATGCTGTGAAGCAGAAACTCACTGTTGTAGTGGAGGACAACGGACAGCCCTCTCGTTCAGCTACAGTCAATATTAACGTGGCGGTGGCGGACAGTTTCCCTGAAGTGCTCTCGGAGTTCACTGACTTTACGCACGACAACGACAACCTGACTTTTTACCTGGTCTTGGCCTTGGCTGTAGTGTCCTTTCTCTTCATCGTGTCCATCATAGCCATACTGTCAGTCAAATGCTACAGATGGAGACGTGAGAGGATTTTTTCACAAATCCGGTGCCAATCTGCCAGTTATTCCATATTATCCACCCTTTTACGCAGACGTAGGGGGTACAGGAACTTTACAGCACGTGTATAATTATGAGGTCTGCAGGACGACTGACTCAAGAAATAGTGATATGAAACATGCCAGATCTTCCAGTGACAGCATCATTAGTTTGGACACCAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97484 lncRNA upstream 36689 9089876 ~ 9090618 (+) True G72278
TU97464 lncRNA upstream 91281 8955355 ~ 9036026 (+) False LOC103030246
XR_002650234.1 lncRNA upstream 334131 8784572 ~ 8793176 (+) True LOC111193079
TU97390 lncRNA upstream 642544 8483923 ~ 8484763 (+) True G72209
TU97383 lncRNA upstream 689212 8437870 ~ 8438095 (+) True G72202
TU97469 lncRNA downstream 12132 9142362 ~ 9151966 (+) True G72263
TU97492 lncRNA downstream 97285 9227515 ~ 9227886 (+) True G72285
TU97515 lncRNA downstream 462077 9592307 ~ 9639931 (+) True G72305
TU97519 lncRNA downstream 467719 9597949 ~ 9651534 (+) False G72306
TU97521 lncRNA downstream 467719 9597949 ~ 9651534 (+) False G72306
XM_022672086.1 mRNA upstream 4516 9120530 ~ 9122791 (+) True LOC111193087
XM_015608816.2 mRNA upstream 27077 9097379 ~ 9100230 (+) True LOC103033622
XM_022672090.1 mRNA upstream 33830 9092223 ~ 9093477 (+) True LOC107197811
XM_022672053.1 mRNA upstream 91546 8990386 ~ 9035761 (+) False LOC103030246
XM_022671909.1 mRNA downstream 4219 9134449 ~ 9153260 (+) True LOC111193051
XM_022672088.1 mRNA downstream 7557 9137787 ~ 9142082 (+) True LOC111193090
XM_022672087.1 mRNA downstream 26503 9156733 ~ 9158398 (+) True LOC111193089
XM_022672084.1 mRNA downstream 28724 9158954 ~ 9162743 (+) True LOC111193086
XM_022672083.1 mRNA downstream 41092 9171322 ~ 9174899 (+) True LOC103034588
TU96877 other upstream 2241766 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 2588513 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 3089559 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 3090433 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 3621669 5499908 ~ 5505638 (+) True G71414
TU97487 other downstream 12669 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 948349 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 3473122 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 3741254 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 5518599 14648829 ~ 14649551 (+) True G73533

Expression Profile