RNA id: XM_022672086.1


Basic Information

Item Value
RNA id XM_022672086.1
length 2262
RNA type mRNA
GC content 0.42
exon number 1
gene id LOC111193087
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9120530 ~ 9122791 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTcctttgtttgcttgtttattcAACAATGTTTGTGGTTCATGTAGATTGATTTAGCGTTTGCTTCTAAATTAAATGTATGAAGCAGATTTCTgtgcatatacagtacattgtaATACGTCACACTTAACTCTGAGTGCCGCTGTTGTTCAGTAGTTTGGTGGAAGGCTGTACATTTCTGGCAGTGCCTCCCCCCGCTGACGGGATATTATGGAACAGAGCACTGAAGGCTCATAAAGAGGAACGACGCCACGAATCGTACAGGCGTTGATTTTTTGaggatttattttaagtatatataattTCTCTTTGAAAcctttttttgtgtatattcCTCTATCGAAATATAGAGTATGATGCTTTTTTCTTGACTGCCTGCCTAGGTCACTGGATCTGTTTTAATATCGCTGGTGGAAAATGTCGGAGAGAACAATGGCGCGGCAAGTACTGCTGTTTGTGTATCTCGTCTGTCTCAGTTCAGTGCGCGGACAGGTCAGTTATTCTATTCCAGAGGAAATGCAGAAAGGATCTTTAGTCGGAAACATAGCGCAGGATTTAGGATTAGATTTAAAGAGACTGAAATCAGGTAAAGCTCGTATTTATACAGGGGACAGCACTGAATACATCGAGCTAAATAAAGAGAGGGGAGTCCTCCTCATCAAAGAGAGAATAGACAGAGAAGCTCTGTGCAGACAGACAACGCCTTGCGCTCTACATTTTCAGATCATTTTAGAGAATCCGATGGAATTGTTCAGAGTGACATTAGAAATCACCGATGTAAATGATAACGCCCCTGCATTTGCTGTAAATGAGATGAAATTCGAAATAAGTGAATCGGCATTGTCGGGAGCAAAATTCGCTCTGGAGGCTGCTGTAGATAATGACGTTGACGTAAATGGTCTTCAAAGCTACACTTTGAAACCGACTGATAATTTCGGTTTAAGGATGCACAGTTTACCAGATGGCAGTAAGACCGTGGaactaattttagaaaaaacgCTAGACCGAGAGAAGCAAGAACACATTACTTTGCTGTTAACAGCACTTGACGGGGGAGAGCCACGGTTATCTGGCACACTGCAAATTCTTATTAACGTTCTAGACGCAAATGATAACGCTCCTGTTTGTGGTCAAGCAGTATATAAAACCAGCTTAGAAGAGAACTCTCCAAGGGGAACATTATTAACTACAATTAGCGCAAATGACGCAGATGAAGGGTCAAATAGTGTCGTCGTTTATTCACTGTCTGCCACATCAAAAGGAGTATCGGATCTTTTTGAAATTGGTCAGCATGACGGCGTAATAAGGTTAATAGGAAATGTGGATTATGAAAAATTCAAACAGTATCAGATTGTAGTTGAAGCCAGAGACCAGGGTGGTCACACGGATTCATGCAAAGTCATTATTGATGTCAGTGATAAAAATGACAATGCACCAGTGATCAGTACAATatctaaatcaaatcaaatttctGAAAATGCCAAAGCAGGAACTGTTGTGGCAATGATGAACGTCCAAGACGCTGATAAACATGAAAACGGGGTAGTAAAATGTAAATTGAATGAAAATATTCCATTTGTCATTCATTCTTCATTAGATGGTTTCCACAGTCTTGTAACTGAAAGCGATCTAgatcgagagagagagtctgGGTATAATATTAGTGTGATGTGCACTGACGAGGGGACTCCGTCTCTCTCCAGCAGCGTCACTCTCTCCTTACAGATATCAGATGTGAATGATAACGCTCCTGTTTTTGAGAGGAGCTCATATGAGGCCTCCATTCCAGAAAATAATACACCCGGTCTCTCAATATTTACAGTCAAAGCCAGTGACGCTGACTGGAACCAGAATGCACGTGTTTCTTACATACTGCAGGACTCTTCCGTAAACGGAGTTTCCGTCTTCTCTTATGTATCTGTCAGTCCTGATAGTGGCGTTATCCACGCAGTGCGTTCTTTTGATTACGAACAAATTAAGGATTTCCAGTTTCGCGTAATAGCTCAAGATGCAGGCTCCCCTCCTCTCAGTAGCAATGTAAGTGTAAAGATAGCGATTCAGGACCAGAACGACAACGCGCCTCAGGTTCTGTATCCAGTGCAGACTGGGGCACTGTGGTGGCTGAAATGGTGCCTCGTTCAGCAGAGGTGGGCTATCTCGTGACCAAAGTGGTGGCTGTTGATGTGGACTCTGGACAGAATGCCTGGCTTTCATATaaactgcagaaatccacagacAGGGCGCTGTTTGAAGTGGGCTTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97484 lncRNA upstream 29912 9089876 ~ 9090618 (+) True G72278
TU97464 lncRNA upstream 84504 8955355 ~ 9036026 (+) False LOC103030246
XR_002650234.1 lncRNA upstream 327354 8784572 ~ 8793176 (+) True LOC111193079
TU97390 lncRNA upstream 635767 8483923 ~ 8484763 (+) True G72209
TU97383 lncRNA upstream 682435 8437870 ~ 8438095 (+) True G72202
TU97469 lncRNA downstream 19571 9142362 ~ 9151966 (+) True G72263
TU97492 lncRNA downstream 104724 9227515 ~ 9227886 (+) True G72285
TU97515 lncRNA downstream 469516 9592307 ~ 9639931 (+) True G72305
TU97519 lncRNA downstream 475158 9597949 ~ 9651534 (+) False G72306
TU97521 lncRNA downstream 475158 9597949 ~ 9651534 (+) False G72306
XM_015608816.2 mRNA upstream 20300 9097379 ~ 9100230 (+) True LOC103033622
XM_022672090.1 mRNA upstream 27053 9092223 ~ 9093477 (+) True LOC107197811
XM_022672051.1 mRNA upstream 84769 8987805 ~ 9035761 (+) False LOC103030246
XM_022672085.1 mRNA downstream 4516 9127307 ~ 9130230 (+) True LOC103033934
XM_022671909.1 mRNA downstream 11658 9134449 ~ 9153260 (+) True LOC111193051
XM_022672088.1 mRNA downstream 14996 9137787 ~ 9142082 (+) True LOC111193090
XM_022672087.1 mRNA downstream 33942 9156733 ~ 9158398 (+) True LOC111193089
XM_022672084.1 mRNA downstream 36163 9158954 ~ 9162743 (+) True LOC111193086
TU96877 other upstream 2234989 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 2581736 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 3082782 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 3083656 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 3614892 5499908 ~ 5505638 (+) True G71414
TU97487 other downstream 20108 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 955788 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 3480561 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 3748693 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 5526038 14648829 ~ 14649551 (+) True G73533

Expression Profile