RNA id: XM_022672088.1


Basic Information

Item Value
RNA id XM_022672088.1
length 1195
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC111193090
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9137787 ~ 9142082 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTAGCCTCTGTGTGGCGCTGTTTGATAGTGTGAAAGCTTTAAACTGTCATTGCTTGATCCTCCCTCAACCGTGAGATCACTGATACTGCGCATGCTCTATGTAATTCGAGGCAAAATAGGCAGATGAACAGACGTGCTTCTTGCTTACCGTCTATGTTTCCGATTCAGTTTTACTATAGAACAATTCGCAAATATTTCGTTTaatctacaattttttttacatttcaatatAAGCTAGCTTTGTTCTTTGTCGACTGAAAGACGACGCTCTTGCACCCGTCAAATGACATCTCTGAAGAAAATGAGTCTTTtactccttttttcttttgtccTGGTTGTTGCGCACGGACAGGTCCGTTATTCTATTCCTGAGGAGATGAATAAGGGATCTGTTGTGGGAAACATCGTGCAGGATCTCGGTTTGGATGTTAAAAGACTGAAATCTGGTCGAGCGCGGATCTTTATGGAGGACGGTCGTGAGTACATCGGTCTAAATGTGGATAAAGGGACTCTGgtaataaaagagagaatagaTAGAGAGGAGTTGTGCGGCCAGATTACTCCGTGCTCTTTACATTTTCAGATAATTTTAGAAAACCCGATGGAGCTGCATAGAATCGATGTagaaatattagatattaatGACCATGCTCCTGTTTTTGAAAAGAAAGACGTCGTTATTGAAATTAAGGAATCTATGCTTACGGGGTCTCTGTTTTCTTTAGATAATGCACATGATCCCGACGTTGGAGAGAATACACTGCAGAGATACACCCTCAATCCAACCGATCATTTCACTTTAAAAGAATTATCTCGGAGTGATGGGACTAAATATGTTGATATGgttttacaaacacatttagacagagagaaacacgaAGAGCACCAATTAATACTGACAGCTTTTGATGGAGGGAACCCTCAAAAATCTGGAACAGTTAAAATTACGATTGTTGTTATTGATGCAAACGATAATCCTCCCGTTTTCAGTGAGCCTGTCTACCGTGTGTCTTTACCAGAAAATGCAGCTAAAACAAGTATAATACTGACCGTGCGTGCAACCGACAAGGATAAAGGCTCTTATGGCGAGATTATATACTCATTTTCACAAAACACCGGAAAAGTGGTGAATATTTTACCATAGATTTGGAGACAGGTGAAATTCGAGTTAATGGTCCTTTAGATTATGAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97484 lncRNA upstream 47169 9089876 ~ 9090618 (+) True G72278
TU97464 lncRNA upstream 101761 8955355 ~ 9036026 (+) False LOC103030246
XR_002650234.1 lncRNA upstream 344611 8784572 ~ 8793176 (+) True LOC111193079
TU97390 lncRNA upstream 653024 8483923 ~ 8484763 (+) True G72209
TU97383 lncRNA upstream 699692 8437870 ~ 8438095 (+) True G72202
TU97469 lncRNA downstream 280 9142362 ~ 9151966 (+) True G72263
TU97492 lncRNA downstream 85433 9227515 ~ 9227886 (+) True G72285
TU97515 lncRNA downstream 450225 9592307 ~ 9639931 (+) True G72305
TU97519 lncRNA downstream 455867 9597949 ~ 9651534 (+) False G72306
TU97521 lncRNA downstream 455867 9597949 ~ 9651534 (+) False G72306
XM_022672085.1 mRNA upstream 7557 9127307 ~ 9130230 (+) True LOC103033934
XM_022672086.1 mRNA upstream 14996 9120530 ~ 9122791 (+) True LOC111193087
XM_015608816.2 mRNA upstream 37557 9097379 ~ 9100230 (+) True LOC103033622
XM_022672090.1 mRNA upstream 44310 9092223 ~ 9093477 (+) True LOC107197811
XM_022672047.1 mRNA upstream 102026 9010159 ~ 9035761 (+) True LOC103030246
XM_022672087.1 mRNA downstream 14651 9156733 ~ 9158398 (+) True LOC111193089
XM_022672084.1 mRNA downstream 16872 9158954 ~ 9162743 (+) True LOC111193086
XM_022672083.1 mRNA downstream 29240 9171322 ~ 9174899 (+) True LOC103034588
XM_015608812.2 mRNA downstream 45162 9187244 ~ 9194515 (+) True LOC107197946
XM_015608793.2 mRNA downstream 54371 9196453 ~ 9225559 (+) True LOC111188173
TU96877 other upstream 2252246 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 2598993 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 3100039 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 3100913 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 3632149 5499908 ~ 5505638 (+) True G71414
TU97487 other downstream 817 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 936497 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 3461270 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 3729402 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 5506747 14648829 ~ 14649551 (+) True G73533

Expression Profile